Array 1 432128-433804 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXUH01000002.1 Salmonella enterica strain BCW_3072 NODE_2_length_462870_cov_2.43839, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 432128 29 100.0 32 ............................. CCTGTGGGGCCGCCGCGAATTTTCAGCAGAAT 432189 29 100.0 32 ............................. TGAGTAATTATATACACAACAAATTCAGTGTC 432250 29 100.0 32 ............................. GGCGGGGCGCTGGGGTTGCTCGGCGGCGTGCC 432311 29 100.0 32 ............................. GATTTCAGGGTTATCCTGCAACCATTCCCTGA 432372 29 100.0 32 ............................. GCGGCATGGAAAGAATGAGCGCCAGTTTTAAA 432433 29 100.0 32 ............................. TAACAGTATTGAGTTAACTCTTTTGCATGGAA 432494 29 100.0 32 ............................. GGCGCCCATCACGCGCAAAATTCGCTTGTCGA 432555 29 100.0 33 ............................. CGATTTTTTTCGCACCGGCTGGGGTTCGCTTGC 432617 29 96.6 32 ............................C CTGATGGAGTTCACGACAGGCAGCATAAAAAT 432678 29 100.0 32 ............................. CGCAGTTACAGACGTACTGGGCTGGTGAGGAT 432739 29 100.0 32 ............................. ATCCTTATCACTCCCAAGAGGCGTAACCATTC 432800 29 100.0 32 ............................. CGTGGCTCGCTGGCGTCCACCAGTGCGGCAAT 432861 29 100.0 32 ............................. AGGCAAAACCACAGGACGGCAGTACCGTTAAT 432922 29 100.0 32 ............................. TGTTAACTGCAACCAAAAAGCATCGTGTACTG 432983 29 100.0 32 ............................. GACGATGTTACCGGTGCTGATGTGCTGGATAC 433044 29 100.0 32 ............................. ACGCTTACGACACGTTTCATACCGTGCTGAAC 433105 29 100.0 32 ............................. TTCAATGCTAAATCAGGTCGCCGCACCGAGAT 433166 29 100.0 32 ............................. ACGATTCAGGACGTGCTGATTTCTGGGTTGGT 433227 29 100.0 32 ............................. CACGTTTCCAGCGCGCGCAGTACGTAGGCGCT G [433248] 433289 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 433350 29 100.0 32 ............................. AAGCGGCAGCTTTGCCACTTCCATGTGGCAGT 433411 29 100.0 32 ............................. AACGATTAAACCTGCCAGTTATCGCTGAACAG 433472 29 96.6 32 .....T....................... ATTCGCTCATCCGGGATATTCAGAGTACGTTC 433533 29 100.0 32 ............................. CTTATTTGCCCGGATAATTGAGCCATAAGCAT 433594 29 100.0 32 ............................. GCGGCAGTATGACGTACCAGCTTATCTACGTT 433655 29 100.0 32 ............................. GTATCGAAACGGCGCTTGCCGCGTACCAGATT 433716 29 96.6 32 ............T................ GCTCACAGAGTTACATCCTCGATTACGGTCTA 433777 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTAATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGATTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 450500-452727 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXUH01000002.1 Salmonella enterica strain BCW_3072 NODE_2_length_462870_cov_2.43839, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 450500 29 100.0 32 ............................. TCAGGGGGGAGGATTTTATAGCCGTTGAAATG 450561 29 100.0 32 ............................. GGCCTGATTGCGTAATGTTTGGAGAGTATTAA 450622 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATAGTAACGAC 450683 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 450744 29 100.0 32 ............................. ATCCGCCCCCGTTCCGTAGTAGCCGCCCAAAT 450805 29 100.0 32 ............................. GAAAGAGAACTTTGCGAATCAGGTCAATGCCC 450866 29 100.0 32 ............................. AGAGGAAAGGGGGAAAATTCAGAAATAATTTA 450927 29 100.0 32 ............................. TTCCCGCGTGCAATGTGGATAACCTTTATTAG 450988 29 100.0 32 ............................. AAGGTGTTTCCGCCCGCCAACGCCCCACTTAG 451049 29 100.0 32 ............................. CGCGTTTTCGCCCCGGAGACAATACCAAAATA 451110 29 100.0 32 ............................. TGTTAACACGGTGTACAGGGGGCCACCGTGGA 451171 29 100.0 32 ............................. GAGATAGGGTTTGCAGAAAATGAATGTCTAAC 451232 29 100.0 32 ............................. GATGCAGAAAACCCCGCCGCCAGTAAACTGGC 451293 29 100.0 32 ............................. AGAGCTGATCGCCACGGCGTTTAAAACTGCGA 451354 29 100.0 32 ............................. CTTCTCGCCTGACGCTAGTTTTTCAGCATTTT 451415 29 100.0 32 ............................. TTCGCCGCGCCCGGGCGCAGAACATGGGCGAA 451476 29 100.0 33 ............................. TAGATCGTGATGCGACGGTGGCTGAGTTAAAAC 451538 29 100.0 32 ............................. CCAGTGCTGTTATCTTCTACCTCTCCCACCCA 451599 29 100.0 32 ............................. AAAAAATCGGCGTATCTCGGCAGTACCGGAAC 451660 29 100.0 32 ............................. TGCCGGATTGCCACTGGCGAGCTGTTCATTGG 451721 29 100.0 33 ............................. TTACCGATGAGGTTTGCGGAAAACGCCCCGAAG 451783 29 100.0 32 ............................. ACAACAGAACTATAACGAAATAAGGGGTTAAT 451844 29 100.0 32 ............................. GATGGAAAATCACCTTGCTCATGATTTGAGTG 451905 29 100.0 32 ............................. CGACTGCTCAAATTTCATAGTTGTTCTCCTTC 451966 29 100.0 32 ............................. TTTTACACGCTGGCGGAGGGCGCATCATATCC 452027 29 100.0 32 ............................. CTACGCGGTAAATTCTGGTAATTTCACTGTTG 452088 29 100.0 32 ............................. GCCGAACGAGATCCGATCGCCGTCCAGCTGGG 452149 29 100.0 32 ............................. ACCAGCGTGATCCAGATTTCCTCTACAATTTT 452210 29 100.0 32 ............................. ATTTCAAACACTCAGGGTCTGCCAGCGCCTCA 452271 29 100.0 32 ............................. TGCTGGTGTTCGCCGCCCAGTTACGCCAAGGA 452332 29 100.0 32 ............................. TACGCGCCAGGCGCAAAGGTGGCTCTATCGTG 452393 29 100.0 32 ............................. ACCGGAATTGATGATTCACGCGTAATTAATTC 452454 29 100.0 32 ............................. CGGACTGACGTCGTTCTCGTCCGTGTAATATT 452515 29 96.6 32 ............................T GTTGCTGCCAGCAAGGTTGAAACCAGCATTCC 452576 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 452637 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 452698 29 100.0 0 ............................. | A [452725] ========== ====== ====== ====== ============================= ================================= ================== 37 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCTGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //