Array 1 1386-1964 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARS01000213.1 Gilliamella apicola strain A9 NODE_213, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1386 29 100.0 32 ............................. TCTAGACTATATCTTATATAAAGGATACCCCT 1447 29 100.0 33 ............................. CTTGCGCTATGTTGCGGGTCGCCGTCGTCGCCC 1509 29 100.0 32 ............................. GCGATTGATACCGTTTCTGATAACATGATTCA 1570 29 100.0 32 ............................. CAATTCAAATAATTATAGCAGATACGCCCGCC 1631 29 100.0 32 ............................. GGTGGCGGTTGTACTGTATTTGAAAGGCGCAA 1692 29 100.0 32 ............................. GCGGACGATTATAGCGGCGTAGACATGCCGTT 1753 29 100.0 32 ............................. TCCATGCAGAACAACCTATTGAAATTAAAAAA 1814 29 100.0 32 ............................. GCGTTTTCTCGTTTCTCCACGGACCAGGCGAA 1875 29 100.0 32 ............................. TTTCCGAAATGGCATGGCGTAAACTTACACCT 1936 29 79.3 0 ............C..........TTTT.T | ========== ====== ====== ====== ============================= ================================= ================== 10 29 97.9 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : AAATGGTACTAACTAAAAATCGGTGTTTAAGTCTAATTTATGTTAATTTTGTAACCGAACCACATAAGCAACCAATTCTAAAAATAGAGTGATTTTGATAACAACAAAGCATTAAAAACACCTCAAAAAAATCATATTAAAAACATTGAAAAGTTGGCGGAAATTTCAGCAAATGATTTTAGTTAATAAACAATAAGTTATAATAAGGACGTTCCCTGTATACATATAGATAAACCGTCGATGTATTAATATTGCATATCATTTTTTTGCTATTCAAAAATCGCAATTATGTATTTCATTGTTTACTTTTTTTTAATTACATGAAAAATATAAACTTATCGGTAGAATCCCGTAGAATCTAATTTTAACTTCTATTAATTTTAATTAATCAAATAAAAACATAGTGTTATATATTATGATTTTAATGAAAAATATCCCAAAAAATCGGTAGAAATTTGACAGTCAAGATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : TTTTATGTAAGATTTTGCTAATTTTTGTCAAAAAGTTTCAGATTATGCCTATGTTTCAGTATAAAAACATCGATAATTAATTTAGTTTAATGGTTAATTTTTATACAAGCCAACGTATTATAAAAATGCATATCATTTAATGTGTTAAGGCATTACTATTGTAAAGACAATGGTGAAAGTAACGATCTGTTAGTTCTTGATGTTCATTAGTTATCTTCGTACAATAAAAAAAATTTTTATTTTGGTTTGTTATGCAATTACATTTAGTGGTTAATACGTTTGGTTCTGATTTGCAGCGTCGTTATGGAGAAAAGATCTATAAACTGACGTTACATGGTGGATTTAGTTGTCCAAATCGTGATGGTACTCTTGGTGTTGGTGGTTGCACTTTTTGTAATGTTGCGTCAATTATCGATGAATCTATCCAAGTCAAATCTATTTCTGAACAGCTTGCAACCCAAGCACATCAAATGAAAAAATCAAAGCGTTATCTTGCCTAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22902-23174 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARS01000026.1 Gilliamella apicola strain A9 NODE_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22902 29 100.0 32 ............................. CAAAAATTAATAACAAAAATGTAGCATTTTTT 22963 29 100.0 32 ............................. TCTGATTTATTCTGCATAAGTTCCCTAAATGT 23024 29 100.0 32 ............................. GAAATTAAATTATCGTTCAACGGTACAGACGT 23085 29 96.6 32 ..............C.............. GCAGATGATAAACGTTTAAAACGATTTGAACG 23146 29 82.8 0 A.............C........T..T.A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 GTGTTCCCTGTATATACAGGGATAAACCG # Left flank : GCCCAAAGTACTGTGGATAATTCATCATCAGTCACTTGCCCAGCAGGGAATCCACCACCTGGCGTTGATACGCGTTTTTTAAGACTTTCAAACAGACTCATGCCATCTTTCATTTGCGGTGTCGGTAAATTAATATCGGCATAACAGAATGGTAAACAAAACAATGATAAAAATAGAATGGAAACGGTCTTCCGTAAACCCCAAGGCATAACATACTCCTGAACTTTCGGTAATAGCGTGGTGATATCTTATTGCTAATGATCACAATTATCAATATCAAATAATAATAATTATCATTTTTAAGCTAAATTAAAATTATTAAAATAATCAATATAGTTATTGTTAGCGACCGATTCGCTAATATCAGCTTTATAACATTAATTATGCTGTTAATAAAAATATCGGTTAAATCAAAATGATTTGATTAAAAAACAACCTAAAAAGTTGGTAAAAATTTTAATGCCACTATTTTAATTATAAAACAAACAGTTATAATTAGA # Right flank : AATAGTAGTCATAAATTTTTCCTACAGTGCTACAATTGGTTGGTATTTATAAACAAAATTTAGCCACGGTTATCGACCTGTGGAATGATTTGCGAGAAAAAACAAAATCACCTGATAAAAAGCAACTATACTCTATTACCATTACAAAATTGCAAGGCACGCAAAGGTGGGCAGTCAAGGTCTTAACGATTCAGATACCTGCTCATAACCAAATATCTATTTACACTCATTAACACAAAAAATCAGATTAATAGAGCTATGTTGTATAAACTATATACATATTCACAATAGATATAAAGACAATGTGAGGATGTAGTATGACCAAGCAAGTAGCTGTTTTAGGAGATATGACCAATTATGGTGGTAGGATTATCACAGCGTCAGGGAATGGCTATTGTGGTATGGATGGTGTTGCTCTATTAGGTGACTTGGTATCCTGCCCTAAATGTAGCAGTACTGGCAGAATCATTGAGGGAGCAAACAATTTTATTATCGATGGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATATACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 165-1108 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARS01000264.1 Gilliamella apicola strain A9 NODE_264, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 165 29 100.0 32 ............................. GTATTAATAAGAAAATGGTTGTAACCGTTCCG 226 29 100.0 32 ............................. ATATCCGTGCACATACACCAACCTAGATTAAA 287 29 96.6 32 ............................C ACAACCTGTTACGTATAATGTTGATTTAGTGC 348 29 100.0 32 ............................. ACGTAATCGAACTGTACCAATCACAAAAGATC 409 29 100.0 32 ............................. TTTCTGTATGATCAGTATCACGATTGAGATTG 470 29 100.0 32 ............................. CTGTCGAACGCTACACATTGCAAAAATTAAAT 531 29 100.0 32 ............................. GATGTTAGTATTACCAGTCATTATTGATCAAT 592 29 100.0 32 ............................. GCAACATCGAGCACGAGGGCGAGACACAGCAA 653 29 100.0 32 ............................. AATGCCCTGAATGCAAATTTATGAAGCCGATC 714 29 100.0 32 ............................. TTCAATTTCTTTTTGATTATTATCATAGAAAT 775 29 100.0 32 ............................. CTGGACATCGGCATGATTGAAATTATTCTACC 836 29 100.0 32 ............................. GGCGTTAGAAAGCTATTACGTCTGGAAATGCC 897 29 100.0 32 ............................. CGTGGGATGATAAAAACGGTTGTTGGCGAGAT 958 29 100.0 32 ............................. GATGTTAGTATTACCAGTCATTATTGATCAAT 1019 29 100.0 32 ............................. CGGTCCAACATTAGAGACCGTGTTGGTTTTGT 1080 29 89.7 0 .......T..................TT. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.1 32 ATGTTCCCTGTATGCACAGGGATAAACCG # Left flank : TATCGGTAGAATCCCGTAGAATCTAATTTTAATTTCCATTAATTTTAATTAATCAAATAAAAACATATTGTTATAGATTGTGATTTTAATGAAAAATATTCTAAAAAATCGGTAGAAATTTGACAGCCAATATTTTAATTATAAAACAGTATGTTATAATTGGTA # Right flank : GGATTGGGTGCATCGATTCTCTCGATGTTATTGTATATTCCCTGTATATATATGAAAAATTAGAAGGTATTGTTATAAAAAATAAACGAGCAAAGTTGTTTTTAAAGACAATATCTGATTTATTAAGATTAGCTGTAAATGTTTTTCTGAAACACAATAAAACTTAATCTAATATTAACCAACGATTGTAAGGAATTGATATGAAAAAGATACTAATGTTAATTACCGCTCTATTTTTATTCGGATGTGACAGGACCTATACTGTGGAAGAGTTCAAAAATGATGAAAAACTAACAGATGAATACCAAAAAAAATGTCAAAACGGTGAAATTGATGGTGATAGTTTAAATTGTCAAAACTCTCGCAAAGCAGTAGTTGTACGAAATAAAGTTAGTAATGCAAGTTGGAATTAAAGTCATTTTAAAAGTGGCTTTTAAAACTTTATCTGTGGTAAGTTTTTAGACTTAAATTGATTGTTATTTATTTGAAACTTATCACTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6330-6966 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARS01000038.1 Gilliamella apicola strain A9 NODE_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 6330 26 100.0 35 .......................... CCGAAAATTATCCTGAGGAGTATAGAAGATTCTTA 6391 26 100.0 36 .......................... CCGGCATTCCGTGCGGTAATTCGTGTATTTCAGCAA 6453 26 100.0 35 .......................... CCGTTTGGATCTCGCCTCGCCACCATGTTTGACGC 6514 26 100.0 35 .......................... CCGATGGCACGGATGATGAAACCAACCTGCGGGCT 6575 26 100.0 35 .......................... CCGCGCATCAATTGGCGCCATTGCGGTTTGAATTG 6636 26 100.0 35 .......................... CCGATTTGGATGATTTTTTGGCAGATAATGAGTTG 6697 26 100.0 35 .......................... CCGAAAAAGAAACTTTTTACTACCTTCTATCAGAT 6758 26 100.0 35 .......................... CCGACCGTTTTATGGAGTTACCATTATTTCATTTT 6819 26 100.0 35 .......................... CCGACGATAATTTATTGAGACGTTTTAACGTATAT 6880 26 100.0 35 .......................... CCGTTGGCGCTCTAATTATTTAGAGAACGGCAAAC 6941 26 96.2 0 ......T................... | ========== ====== ====== ====== ========================== ==================================== ================== 11 26 99.7 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : CTTATTGAAGAAGTTTTGTCCGCTGGTGGTATCGAACCGCCTCTACCACCTGATTATGTCCTGCCACCAGCTATCCCAGAACCTCAATCTTTAGCCGATAGTGGCTTTAGGAGTCGCTAATAATGAGTATGTGTGTTGTGGTAACTGAAAATGTTCCACCTCGATTACGTGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGAGTTTATATCGGTGACATATCAAAACCAATAAGAGAAATGATATGGCAACAAATTGTTAAACTTGCAGAAGAAGGCAATGTAGTCCTTGCTTGGGCGACTAATACAGAATCAGGATTTGACTTCCAAACTTATGGTGCTAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGATTAGTCTCTTTTTTACCTATTTAAAATCAATAGGTTAACGTTCTTTAAAAAATTAAAAAAATTGGTAGATTTTTGGAGTGCCAATAAATCTAAATAAAACAATTATATATATTTAGA # Right flank : ACTATATTCGTCATTTTGCAGGGCTTTCTGCAAATTGTGTAAGGATAAATCAGCTTTTACCTGATTTTTTATTTAACTGAAATCCTTTGTTGGATAAATTATTGCTAATTTGCTCTAAGTCAGAATGTTCAGTTTTTTCTGAAACATTAAATAATTGAGCAAAATATTATACAGTTTTGTATCCATTTTGTTTTATTAGCGGTTTATCTAAAAAAGCTTGTCTTTCTGTTAGTATTGGATACCTTCTTGTTCAATAACAACACAATGATTTGATTATAATTAGTTAAAATAGTTTTTATATCACAAAGATCTTCAATAACTTGTTGCAATGATGGTATTGGAAAACACAATAAGGTATAAAATTAGATTTAATTTTTGTCTAATATTTTTATACTTATTGATAATTTATTATAGGTAATAATAAGTTTTTGAGATTATTTGCCTTAAAAGCATGGATTATGGTAGATTTTTCTTATTTATTATTGATATTAAAATAGAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6142-5014 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARS01000098.1 Gilliamella apicola strain A9 NODE_98, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6141 29 100.0 32 ............................. CTAACCCGATCAATTAGTTTAATTGTAAAATC 6080 29 100.0 33 ............................. TCCATCGCGTCAGCCCAACGACATGACCCTCAC 6018 29 100.0 32 ............................. GAGTTAAAAAATGGACGAAGACGAATAAGATA 5957 29 100.0 32 ............................. CGAATAGGTAGGTGATATGACAGAACACGCAT 5896 29 100.0 32 ............................. CCTTGACTCACCTAGTAGACATGGTCTAAATG 5835 29 100.0 32 ............................. TAATGAGTTACGCTCATATGTGCTTTGGGCTA 5774 29 100.0 32 ............................. GGTTTAGTCGTCTTGAATCGTGGTGGGTCGCC 5713 29 100.0 32 ............................. CATTTATGAACCGTTTCCACTCCCTCTAAATA 5652 29 100.0 32 ............................. AAATGTTAACAATTGTCTCTTTTGTTTCTTAG 5591 29 100.0 32 ............................. GGTTCACATTGGATTTAGTCCGAGCAATAACC 5530 29 100.0 32 ............................. GGTTCACATTGGATTTAGTCCGAGCAATAACC 5469 29 100.0 32 ............................. CGTTATGTTGAATTTGTAGGCTGTATACTGTT 5408 29 100.0 32 ............................. GGTTTTGGATACTGATAAACAGCAACAGCACT 5347 29 100.0 32 ............................. AAATTGAGCGAGTACTGCGCGACGTTGGACTC 5286 29 100.0 32 ............................. GGTACTGCAGATTGGTGGAAGAAACAATCAGA 5225 29 100.0 32 ............................. CTTAGAGCTATGGCTAACAGATTATTTTGAGG 5164 29 100.0 32 ............................. TATGTTCACTAAAGGATTTGAAGGTGAAATAT 5103 29 96.6 32 ............T................ TCCTGTAAAATATTCGTACACAGTTAATGGAG 5042 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.6 32 ATGTTCCCTGTACACACAGGGATAAACCG # Left flank : AAGATATATGGTGGAGTTTATAACCTGTTTGACAAAGATGTCTCAAATGCTGACTTCGGTAAAACTTTAGAAGGTCGACGTTACTTCATAGGTACCGAGATTAACTTCTAAATTAACTAATAAGTATTTTCCTATAAAAAAGATGACTGTTAAAACAGTCATCTTTTTCTATTTATACTAATATAGATTATTTATAATCCAAAAATAGAAATACCTTTTTACCCGCCGATAAAATAACTTAGTGCAATGTCAACATAGTAATTTTTTGCTATTTAATAAATCCTAATTATACATTTTAATGTATTATTGTTTTTAATATCATGAAAAATAACAATTTATTGGTAGAATCCTATGAATATTAATTTTACCTACCGTTAATTTAAATTAACTCAATAAAAACATAGTGTTATAAATACTAATTTTATTACAAATTAACCCAAAAAATCGGTAGAAATTTGACAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : TTCTATAAAGCTGGTTAGTCAGACTAAGAACGAAGAATTGGCTAAAATAATTCACGAAATGGATTACATCCCGTGGACAAATGTGTCAACTCCAAGAGGTGTTTATGCTCATGAGATGGGGCACGTGTTACATTATCAATATAAAGAAGATATGGATGATATTATCAAAAAATCATAGGGCGAGCTTGGGCATATGCAATTAGTAATTATGCTCTACATAACAAACGAGAATTTGTTGCTGAAGCGTTTTCGTTGTATATTGAAAATCACATAGAAGCTAAAAAGAGACTTTCTCCAGAATTATTTAAACTTTTCGAATCACTAGATAAGGATATTAAATGAATAAGTTTGATTTATTAGTTGAGCAAGCAACTGAACTGATTAACACCGAGCCACTTCCTGATGATGCAGAGGAACAATTGCAAAAAATTATCGACCAAGCTGACGACAAAACGGAAAGACACATGTTAGGTAGGCTTGCTGAAGCTCTGTTTGTTATA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTACACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3974-3396 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARS01000077.1 Gilliamella apicola strain A9 NODE_77, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3973 29 100.0 32 ............................. TCAAAATAGCATGTTATGGCGATTCGACTACC 3912 29 100.0 32 ............................. GAAATAATATCTATTCAGTATTTGTTGAAAGT 3851 29 100.0 32 ............................. AATATTTTGGAATATTTTCCCACCAGTAGGTA 3790 29 100.0 32 ............................. TAATGGTGCTATTTCGGATTTACCCACTGGTT 3729 29 100.0 32 ............................. TTGGTAGTGTCTGATCTATCCAATATCGAGGG 3668 29 100.0 32 ............................. AATTTTGAATTATCCGAACAGGTTGCGGCTAG 3607 29 100.0 32 ............................. AATTCGTGTGTTAGTGGAAATGCGTACGTATC 3546 29 100.0 32 ............................. CGCCTCTGCCGTTTCAGGGTCAGAAACGAAAC 3485 29 96.6 32 .............G............... AAAATTACCCTCAGCACTAGAAACGGTTTATA 3424 29 93.1 0 .............G.............T. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.0 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : AAGATAAGTTAAATTATTAGGTCCTCTAAAAGATAGAATGTAAAGCTATAGATTGTTGCACTCACGCATACTCATCAACTGGTTATTGCTATCGGCATTTGTATTTAGTTAAAGCGAATCGAATTGTAAGTAAAGCTGGGTCAATAATGTTCCCTGTGCACATAGGCATAAACCGCGTTACAAATGAACCCGTAAAACTAACCGAATGTTTTCCCTGTATATACAGGAATAAACCAGCGATGCGTCAATTTACATAGCATTTTTTTGCTATTCAAAATATCATAATTCTAAATTTTATTGTTTACCATCTTTTTAATTATATGAAAAATATAAACTTATCGGTGGAATTCCGTAGAATCTAATTTTAATTTTCATCAATTTTAATTACTTGAATAAAAACATAGTGTTATAGATGATGATTTTAATAAAAAAGAGCCTAAAAAATCGGTAGAAATTTGGAAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : CGTTAAGCCTTAATGTTGCGGAATATGCTAATCATAAAACATTAAAAAATATTATAAATCAAATGGAATATTTACCTTGGCATGCTGAACCAACACCTAGATGTGTTTATGCCCATGAGATGGGCTTGTTTTACACAAAAAATATGGCATGCAACTTGAAGAAATAGCTAGAGAGGGTGGTATGATGGATGGGCATTTGTCTTAGCAAATATAGCCAAAAAGAAATTGGTGAATTTATAGCTGAATCATTTTCATTATTTATTGAAGATAAGATTGAAGCCAAAAAACGATTATATTTACCATTATTTGAGTTTTTTAACTTAATCGGTAAGGTAAACTAATATGAGCAAAGAACAAGAATTAATAAAACAAGCTGAAAAACTCGCTTTACTTTCTTCTTCCGAAAATCCCGTTGAAAAACTTAAGGAATTACTAAAAAATGAGGCTGATTATCATATGGGGGCTAGAGTCGCTGCATTTTTTTATATAGCTGTTGAAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 9001-8116 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARS01000077.1 Gilliamella apicola strain A9 NODE_77, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9000 29 100.0 32 ............................. GTCAATTAGGTGGTTGGGTTGTTAATGAAAAT 8939 29 100.0 32 ............................. TTAGTTATGATGATAGACAACATTATTTTGCT 8878 29 100.0 33 ............................. CATGGCTAAACCTTTTAAGCAGATCCTCCAAAA 8816 29 100.0 32 ............................. AAATTTGATGAGGCATCACAATGACTAAACGT 8755 29 100.0 32 ............................. GTCGCATTACCTGTGTGCAACCATCATTTTTA 8694 29 100.0 32 ............................. CATAACGAATCTCCCATATTTCAGGTGTTGTT 8633 29 100.0 32 ............................. TCATTGATGCAGGTATAGGTTATACCTATTGT 8572 29 100.0 32 ............................. CTCAAATTGGCATTGAGACTGGGTAAAACGCT 8511 29 100.0 32 ............................. ACGAGTGACAAAATTTTAATTTATGTTTTATT 8450 29 100.0 32 ............................. AAATCGAACAATTAAAATCCGAAAACGCCGCA 8389 29 100.0 32 ............................. ACCGTTAGCGGCGGTGGTTTCTACCCAATCAA 8328 29 100.0 33 ............................. GATTGGCACTCGTGCAACGTGTAAAATATTGTC 8266 29 100.0 32 ............................. AGCGGCGTATCAACAGAGCAATTTGGCGCCAA 8205 29 96.6 32 .............A............... TTCAATGAGTTAGATAGGTTAGGAGAATGGAA 8144 29 96.6 0 .............A............... | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.5 32 ATGTTCCCTGTATGCACAGGGATAAACCG # Left flank : TCAGTATAAAAATCAATGAATAATTCAAATTAACTTTATGTTTATAAAGAAAACATAATATTTGGTTAATATAAGCATTTGTTTTAATATCGAGTAAGAGATTCGAAATAACAGAGTTTACTTAATAGCTTTCACTTAAAAAATATATTGGAGTATTTAAAGATCGTTGAAATGATATTAACTAAAAACGAGTATATGAATCATAGATTATGAAAATTTGGTAACTAAGATATACAAACAAACCACTTTAAAAATAGAGTAATTTTGATAATAACAAACCACTAATAACATCTCAATAAAATCTACTATTTTTTTAACTAAATGAAAAATATAAACTTATCGGTAGAATTCCGTAGAATCTAATTTAAATTCCATCAACTTTAATTACTTAAATAAAAACATAATGTTATAAATACTGATTTTGATAAAAAATAACCTAAAAAATCGGTAGAAATTTAGCAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : CTTATTTAGCAACATAATCAATGGGTCCATATTGGTTTTAGTCTGAATAACAACCGTTAAATCGTGTTAACAGCAATCAAACAGGGCGGTAAAACTGTTTACGTGAATGGGTTGATTTAAATAACTGTCCACAAAAAGGATAATACTATGTTTAAACGGCTTGGAATAATCAACAGAAAATCATAGTGAGATAGTGTTAATGTCTCATGGTAATGAGACAATTTTGTTAGTTGTAGAGACGTATTTATTTGAAGAGATAATTGCATCATGGGTCATAGCAACATTAATTACCATATCTATTTTTTGTTTATACGCAAAATATGTTAGTCCTGAAATTTGGAATTATATAGTCGCGTTTTTATTTGGATGATGTATGAATAAATCAAAAATATTAGGTGCCGCATTAATTGTCGTTATTTTTGTTCTAATTATTTATTTCGGTTACAACAATTATCAGGAAAAAATAGACTCAAAAACGATAAATTAGAATTAACCAATAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 239-939 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARS01000173.1 Gilliamella apicola strain A9 NODE_173, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 239 29 93.1 32 A.A.......................... TCCTAACCGTTAGGGAAAATTTTGTAAACGCA 300 29 100.0 32 ............................. CAGTTTGCATCGATATCAGAAGGGATTTAATG 361 29 100.0 32 ............................. GGAATATGGTTTCGGGTTCGTTAGCATCTCTG 422 29 100.0 32 ............................. TAATTGGTTTTTAAATGGCGAGCTTTGAATGT 483 29 100.0 32 ............................. ATATTGTGTCGATATTAAAAGCAAAGCCAAGC 544 29 96.6 33 A............................ CAAAAAGCGACGATATATACTTAAACCTTTAGC 606 29 93.1 32 A.............T.............. AGGATCCTCACCTAGCGCATATGTCCTCATAA 667 29 96.6 32 A............................ AGTTCGATCAACCGACTAATGATATTACGCGC 728 29 96.6 32 A............................ AAAATCACGAAGTTTTACCAGTATCAGAACAA 789 29 93.1 32 A............A............... CGTCTATCCTCAATATTCTAGTGGTGGTTTTA 850 29 93.1 32 A............A............... CCACCAGTCGTCCTCACGCTCATAGTCTGGTA 911 29 89.7 0 A...................A.......A | ========== ====== ====== ====== ============================= ================================= ================== 12 29 96.0 32 GTGTTCCCTGTATGCACAGGGATAAACCG # Left flank : TTTTGATAACAACAAAGCACTAATAGCTTCTCAATAAAACTTACCATTATTTTAACCAAATGAAAAATATAAAATTATCGGTAGAATTCCGTAGAATCTAATTTTAATTTTCATCAATTTTAATTAATTAAATAAAAACATAGTGTTATAAATACAGATTTTGGTAAAAAATAGCCTAAAAAATCGGTAGAAATTTATCAGTCAATATTTTAATTATAAAACAGTATGTTATAATAGGA # Right flank : AAACGGTCAACATATTCAGACGTTTTAATCATATGCACAGGGATAAAATACAAATCCACTACCGCCTTTGTAGCGGTTTTTAATTGACCTAATGGTTAAATAGCATACCATTACCGAAATTTAATTATTAAGGGAATGGTATGAAAAAGATTAAAAAACTTTTATGAAGCTTTTTTGTTTTCAAGATAAAATTTAATTGCATCAATAATCAGTTGCGCTTGAGGTACCTTTAATTGATTGCTTGCTTCCTCAATTAATGCAATATCATCTACATGAAGCTTAAAACCTTTTGTTTTCACACCTCGTTTTTCGTCACTTTTTTTTTGAATTACAGCCCTTGTTAATGCCATATAATCACCATGATTTTTAAATAAAAATTGTTATATTTAAGGCCGCAGGTGAGGACTGCAACCTTCAACCTTTGAAGCAGTTTTAGTAAACTGTACAACTTCAGATTATTAAAACTACGAGAATTAAGATTCTGTTCTTCTTGTTTCTCC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //