Array 1 51585-50777 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGG010000001.1 Pectobacterium carotovorum strain A280-S2-N16 A280_(paired)_trimmed_(paired)_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 51584 28 96.4 32 ...........C................ CGCGTTTACCTCATCAACCGAATATTACACAG 51524 28 100.0 32 ............................ AGGGCACCCACACCGCCCGATCAACGGATTTT 51464 28 100.0 32 ............................ TAGCGCGAGAACACGAACCCATTGCACCATGT 51404 28 100.0 32 ............................ ACCGTGCGGCCATCTGACCAGTAATTGCCGTC 51344 28 92.9 32 ...........C.....T.......... GATCAGGGGATGTGATTCATGTGTCAGGGCGA 51284 28 85.7 32 ........T..C.C...T.......... CGACCGCTGGGAAGCTGCTGACACACCCGAGC 51224 28 100.0 32 ............................ GCAGCAACTCCCTGTCGTCATTTACAAAATCT 51164 28 96.4 32 .................T.......... TTACCTGCCGACTGTCTTTTACGCCAGTCAGC 51104 28 89.3 33 ............G....T......A... TATGGGAAACATGACAGAATGCTATCTGTCACA 51043 28 100.0 32 ............................ AGCAGCAAACACGCATTGGCCGTACCTGGACC 50983 28 92.9 32 T..........C................ GGTAAATCACGCCCCTGTCGTCGCAAGCGCCA 50923 28 92.9 32 ...........C.C.............. AATGTTCCAGTGATTTGAGAGGAACTCCTTCG 50863 28 89.3 32 ..........AC.C.............. TTTATCAAACGCGAAAATGCGGGATTCGGGAT 50803 27 82.1 0 ............GC........-...TT | ========== ====== ====== ====== ============================ ================================= ================== 14 28 94.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GAGGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCCGCGTGTACAGCCGTACCTAACGGTGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGTGCCGAACGGTTACGCCGACGTTCGGTGAACAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGAATACCCGATGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGCTTGTCCAACGGCCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACGCCCCCGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGCCAAAAAAGCCATATTCTCTTTAACAATCTGGTGGTTAGCGTAAAATCTTAAC # Right flank : CTTATCAGAATGCGTCGCTGGCGCGACGCATTTCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGATGTTCGCACAAGTAGATGCCCTGCCAGGTGCCGATGTTCAAGCGTCCGTTGGTGATGGGGATTGTCAGGCTGTTGCCGAGCAAGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGCTCATCCTCCGGCACTAGGCGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGCTTGATGAATACCTGCATTAGCCCGACGTTTATCTGACGCAGTGCGATAACCTGCGCCAGTATTTCGTCGGTCACCAGATGGAAGCCTCTGGCTTTAGGCTTCAGGCGGATTTCATATTGCGTCCACATTGCCTTATTCCTGCTATCAGGCTTCACGCGCCAGAATCGG # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 60166-61574 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGG010000001.1 Pectobacterium carotovorum strain A280-S2-N16 A280_(paired)_trimmed_(paired)_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 60166 28 100.0 32 ............................ TGATGGCGCGTTACCTGTTTTGCGTGGACAAG 60226 28 100.0 32 ............................ ACGCACCTGCCATAAAACGCTGGATGCTGGAC 60286 28 100.0 32 ............................ TGCCGGGGAATAGGTCAGTTTGACCGTTATAC 60346 28 100.0 32 ............................ GTCAGTGAATTCCTTTACCGCAACGAAATAGC 60406 28 100.0 32 ............................ ATGAATCTACGAACGTGCTCAGGCTTTATTGA 60466 28 100.0 32 ............................ CGACGCAACACAGAGCAGCGGCGCTGTATCGT 60526 28 92.9 32 A................T.......... AGCCAATGAATAAAACAATGTGATATCTACAC 60586 28 100.0 32 ............................ TCTGAATAGGTGGGCGGTGGACACAGGCACAG 60646 28 100.0 32 ............................ TTTCTCGTAGCGCTTTCTGACTGCGTTCAGTT 60706 28 96.4 32 ...........T................ TGTTGTTGCCGTTACAGCTCCGCAAATGCTCC 60766 28 96.4 32 ...........T................ TCAAAAGAAGCGGCATTGCAGCGCATCAACTT 60826 28 96.4 32 ...........G................ AGCGCATAATCAAGAAAACGGAACAACAGCTC 60886 28 96.4 32 ...........G................ GGGGAGCGTGTTTCATCTGCTGGAGCCGGATA 60946 28 96.4 32 ...........G................ CAAGGAAAAACAGGCGCGCCCCGTTCGGCAGC 61006 28 96.4 32 ...........G................ AACAACAGAACAGCGATGACGCCAGAGCCAAC 61066 28 96.4 32 ...........T................ AGAACGGAGGCGAAGAATGATCTCTTCTTCTC 61126 28 96.4 32 ...........T................ GCGCCAACCTTTAATTTGTTGACGTAATCTTG 61186 28 96.4 33 ...........T................ GGCTGGAGTTCGTCGTCAAAAACACGTTCTGGA 61247 28 96.4 32 ...........T................ ATCAGTAACGTTTATATAGCTATACACTGCGT 61307 28 85.7 32 ..G........G.CG............. GGAATGCTCCGTTACTCCACGCTTTTGCAGCA 61367 28 89.3 32 ........A..G.C.............. ACGCGTAATAATTATTATCACTATGCTGGAGA 61427 28 96.4 32 ...........T................ TGCAAAGAGTGTGCGCAATATAAACAAACAGG 61487 28 92.9 32 ...........G.C.............. GATGCAATTTTTCTGACATAACATCAGAGCAG 61547 28 78.6 0 ...A.........C......T...TCC. | ========== ====== ====== ====== ============================ ================================= ================== 24 28 95.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTTCCCAGCATCACCACGCTGGTATTGGCGATGGGGATATTCCAGTACAAAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAACTATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGCAAATCAGACTATCACAAATATTCTGGGAAAATGGTGGCTGCAAAAAATATTACCCAGATGCAGACCCTTTTTCTTTGGCCTATTTCACAGGCTTAACAATCAACGAGTTACCGCTGAGCTGAAAAAAAGGGTTTTTGCGACGAAAACGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCAACT # Right flank : ACGGATTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCTTAAATAACGCATATTGATGACCTTCTTTCGTAACGTTTTTAAGTAATGAGTTTCTTTTAGAGGGAATGAAAAATTGTGGGGGCGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGTCCTTACAGGGAAATAGTTCGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCGGTTTTAAAAACGCTTGTTGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCAACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGACTCTTGGAAAACAGCAATATTTGGCTGTACCGATCCCATCTCGTCGTT # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //