Array 1 5377-7356 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSVB01000019.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-3033 NODE_19_length_91015_cov_70.971195, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5377 29 100.0 32 ............................. CCGTCCGGAGCAGGCGCTAGTTCTTCCAGTGA 5438 29 100.0 32 ............................. GGGGATTATCTGACAGCTATAGGGATTCGGGC 5499 29 100.0 32 ............................. AAAACATCGACTCATAGAATTTGGAGGAGTGC 5560 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 5621 29 100.0 32 ............................. GCGGGGCGGTTATTATTGTTACCCGTTTTCCG 5682 29 100.0 32 ............................. TACGATTCTGGGGAAGGTGAATGCGCAGAATA 5743 29 100.0 32 ............................. CTGGTGGGGCACTTCTGATATGAGAAGAGGGA 5804 29 100.0 32 ............................. GCTAGTGAGCGGGTTTCATGCGTGACCGTAGA 5865 29 96.6 32 ............................A TATTCCGTGCGCCCGTCACTGGTCGTGTACTC 5926 29 100.0 32 ............................. GCGATGGGACTGAACGGCGATCTGATTACGTG 5987 29 100.0 32 ............................. TTAAGCCCCCGGCATTCGGCTATGCCTATTCA 6048 29 100.0 32 ............................. CTGACACCTACGACCCGAGTGATGATATCGAA 6109 29 100.0 32 ............................. TTAAACGTAAAACCAGTGATAACGGCGCTTAT 6170 29 100.0 32 ............................. TAATTAAAATGACCTCATCAGAATTTAGCGGT 6231 29 100.0 32 ............................. ACCAGCAGCACTGTTATCGCTATCAGCAAAAA 6292 29 100.0 32 ............................. CGCGCGACGGGTAAGACCTGGGAAGAGACGAT 6353 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATACG 6414 29 100.0 32 ............................. ATAAATCAATGCTTTTTACCTGTTTTTATTGA 6475 29 100.0 32 ............................. GCAATATCAACTACATCCCCTATTATTCCCTG 6536 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 6597 29 100.0 32 ............................. GGTGATCGCTTTTTTCGTTATGTCGCGCAAAT 6658 29 100.0 32 ............................. CCACACAAAAGCGCATCGGGGACGTTTCTAGG 6719 29 100.0 32 ............................. AGCAACTGGCCGCGCAGAAAGCCGAGCAGGAA 6780 29 100.0 32 ............................. CACTCGATAAGGATGAAAATACTGTATATGAA 6841 29 100.0 32 ............................. GAATCCCGATTCTCGGTGTTGGCGCCATCTAT 6902 29 100.0 32 ............................. ATGCCGTACATAGTCCCCATATGGTTTGTGAT 6963 29 100.0 32 ............................. AGAATGATTTATCAGAGCATTTTGATAGTAAT 7024 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 7085 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 7146 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 7207 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 7268 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 7329 28 93.1 0 ............T..........-..... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23929-25788 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSVB01000019.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-3033 NODE_19_length_91015_cov_70.971195, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23929 29 100.0 32 ............................. CAGTTCGGTTACGTTTTTGACGTTATCGACAT 23990 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 24051 29 100.0 32 ............................. GCCATTATTCGTTACGCAGACACGTTTGACCG 24112 29 100.0 32 ............................. ATCCCCGAGCTACCGCCAGGGCTTATTGATGT 24173 29 100.0 32 ............................. CCACTGCGGCCCCATGCTGGCCGGGCGGCATT 24234 29 100.0 32 ............................. TTTGTCGAGAGATGGAATACCGGTGCTCATTC 24295 29 96.6 32 ..........................A.. GGGTTTTAAATGTCTAATTTACGTGAAGTAGC 24356 29 100.0 32 ............................. AGTGCCTACAAGGTATTCACCGAAGGAGAGAC 24417 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 24478 29 100.0 32 ............................. CGAGGCGGCATCAAAGACGACGAAACGCCATG 24539 29 100.0 32 ............................. TCAAATCGGTAAACGAAGAAAAGCGGGAAATC 24600 29 100.0 32 ............................. AACTCGCCAAATGGGAAGCGCACGTTGAGAGC 24661 29 100.0 32 ............................. AATTACAGGTGCTTGATGGAAAGTTACTGGAA 24722 29 100.0 32 ............................. CCCATCACCAGAAACATGAAACCGTCTTTGGT 24783 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 24844 29 100.0 32 ............................. GCGTCGCGGCGTGGTTTTAACTGGCTGCGGGG 24905 29 100.0 32 ............................. GTGGAGTTGAGGGTCAATAACAAGACCTACGC 24966 29 100.0 32 ............................. GAATGCTGGTTTCAACCTTGCTGGCAGCAACA 25027 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 25088 29 100.0 32 ............................. ATTGTATATCTTGTTGAGTTTGAAGGGTGAAA 25149 29 100.0 32 ............................. ATGGCTGGGTAGTGGAGTAATCATTATGTGCG 25210 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 25271 29 100.0 32 ............................. CCTGACGCCAAAGGGAACGTGAAAGTGTCTAC 25332 29 100.0 32 ............................. TTTAATCGCAGTTTTAAATGTTGCCTGCGCAT 25393 29 100.0 32 ............................. CCTTCGATTTAACAGGCTGGACAATCACGACA 25454 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 25515 29 100.0 32 ............................. ATCGCGCAGAACTGGCGTAATAGTCAGGAAGC 25576 29 100.0 32 ............................. CCGCCCAGAGAGGTCGCCACCTATACGGCAGT 25637 29 100.0 32 ............................. TTGGGGTTAATTGGGCAAATTGAATCAGGAAC 25698 29 100.0 32 ............................. TTGGGTTAATCCCACTGCCGGAAAGCTCGTAA 25759 29 96.6 0 ............T................ | A [25786] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGTTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //