Array 1 303367-304054 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058995.1 Pasteurella multocida strain 671/90 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 303367 28 100.0 32 ............................ ACATAAAACACCTGTGTTTTTATACAATATTT 303427 28 100.0 32 ............................ CTCGTTTTGTGGATTTGCTTGAGTTGGAACTT 303487 28 100.0 32 ............................ GAACAAAGCAGTAGAAATAAGTGAAGAGCGTT 303547 28 100.0 32 ............................ CAAACATTGTGATAAGCGAATTTAGAAACGCA 303607 28 100.0 32 ............................ TCGTGTCAATTGGAAGATTATCAAAAATACTT 303667 28 100.0 32 ............................ AATGGATAGCATTGCTTATTAGTGAAGATAAA 303727 28 100.0 32 ............................ TTGCACAAAGTCAACGCAACCGCATCACAGCG 303787 28 100.0 32 ............................ ATTTATCGAAACAAGATGACTTCTTTCACCGA 303847 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 303907 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 303967 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 304027 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.4 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1530421-1529373 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058995.1 Pasteurella multocida strain 671/90 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1530420 28 100.0 32 ............................ CGCCCTTGGCTTAGAAACGGTCGAAATTAATT 1530360 28 100.0 32 ............................ TCATGGGAAATGAAAAAGAGCCGTTTAACTGG 1530300 28 100.0 32 ............................ ATCAACGCGCACTTTTCCGCCGGGCAATACTG 1530240 28 100.0 32 ............................ GTGAAAATTTTCCGTGAGTTTTCGCGCATTAG 1530180 28 100.0 32 ............................ GCGCTTGTGTTTCTGTCGGGCGCAATAAGATC 1530120 28 100.0 32 ............................ AAGTGAAAAGATAAAAGATAATCACCGTAGTT 1530060 28 100.0 32 ............................ AGAACTTACTGAATTTGATATTAGAAAATCTT 1530000 28 100.0 32 ............................ ATTTTTCACAACGCATCTTTTCCATTGCGATG 1529940 28 100.0 33 ............................ GCACCACGACGGCACGCCACACTGGCACTTGTT 1529879 28 100.0 32 ............................ CACTGTTTTTCTTTTGAGTTTGCCACCCTCAA 1529819 28 100.0 32 ............................ TACTCCTTTGATAGTGTTTAAATGCCGTTTAA 1529759 28 100.0 32 ............................ TGCCGCATTTGTTGGAATAATTCCCATCAGCT 1529699 28 100.0 32 ............................ CCTAGCACGACGACATCACCACTTTTAACTGT 1529639 28 100.0 32 ............................ CGATTTTTTAATCCTTCGTCAATTTCCACTTC 1529579 28 100.0 32 ............................ ATCATAACTGCCTTTAATTAGATTAAAGCACC 1529519 28 100.0 32 ............................ ATCTTGTAGTCGATGTGCTGACTTGAACTCTG 1529459 28 100.0 32 ............................ TGAAATTTTGCGAAAACTGTTGGCAAAACTCG 1529399 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.2 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTATCGCAGAATAATCACATCTAAATTACTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTCA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAGTGCTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAACGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATATCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTAGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //