Array 1 141242-140413 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMNO010000003.1 Paenibacillus sp. EKM202P Paenibacillus_EKM202P_gdna101209_scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 141241 32 100.0 35 ................................ ATTAGATAAATAAAAGAGCCACGTTTCACGGCGGC 141174 32 100.0 34 ................................ TGAAATCAATTGATCGTAAATAGCCGAATTTGAC 141108 32 100.0 33 ................................ CTCAATGTAAAATACAGGATCGTCCCACCCCAT 141043 32 96.9 34 .....G.......................... AGGACCAAGTACGCCAGCTTGAAGCGGGTATTTC 140977 32 100.0 34 ................................ CTGCCTTTCACGGCGTTAACAATAGCCGCCATAA 140911 32 100.0 33 ................................ GCCTACATATCCGCGCCATTAATCATATTTACG 140846 32 100.0 37 ................................ TTTGGATACCTTCCGGCGTCGATGCAGGCCGTTGTAA 140777 32 100.0 34 ................................ CGGCGTGAGGGATTTGTTTCACCGGAGGTGAACA 140711 32 100.0 36 ................................ ATCATAGTTCCAGGCATCGTATGTATACCAAAGGGT 140643 32 100.0 34 ................................ ATACAGGTTCTGTTGTTCACTCACCTTTACCGCC 140577 32 100.0 35 ................................ ATCGTCCTCCTTAGTCTCTGCGACAGGCTTGTTGA 140510 32 93.8 35 .......................A...A.... ATCTTCCATTGTTGGTGCTCCTATCGGATAAGCTG 140443 31 75.0 0 ..TA.G...C..G.......A.....-..T.. | ========== ====== ====== ====== ================================ ===================================== ================== 13 32 97.4 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : CCAGCCAGCTTTCCAGCTTTGAATAAGGTAGTCGCACTCTGTATGGAGTGCGTGGATTGAAATCAGTTCTCGAATTCTTGCAAGCTGTTCTGAAACATCGTCGCACTCCATGTGAGTGCATGGATCATGACGGAGCAGCTGCCACTTGGTTGTACGAGTGGAGAGTCCTTCTTTATTCGAAATTATGATGCAAGTCCGAGAAGTAGGGGCTGGACATTTTGCGCGGTTTGGAGGGGATGGCGGCGGTACATTACAAAAAGAAAGTAGAGCATATAGGTCTAAGGAAGCTTACGATATGGAAAGCCCATTGATTTTGAAAGGTGCGAATGTGAAGCTCACATAAAAACCCCAGGGCCTTCGCACCTCGGAATTTGTCGAAAAGCATTAAGAAAGCTGTCTATGAGAAAAAGACAATAGTTGATATAAGTCTTTTTGGCATCAGTTTTTGCAATAATGTGTGGAATTTATATCATTAGAGCATCAATTACTGCATTTTCGCT # Right flank : GAAAAAGAAGTCTCGTTTCGTGCCCCGCCCAGCAGTAAATAGTGCAAATTTCTTTTTAACGGATTCCTTATTCGACAATTTCCCCCTTACTTTTATGCAATAATTAACTAACATTACTATGTTGAAGCATAAAATTAACTGGGGAGTTGCTTATGAGAATTTTCATGAGTAAGTTTCTAGAACGCTATGTAACGATTTTATTGAGCTACGCAATAGGTATAGGGTTATTTTACGCCGTCCAATATGTCTCAATATGTGTAAGTTATGCTGAATTTTCGTTATAAATATTAGTTGCATAATATATTGACAGATGGTTAATTTTGGAGAAGAATAGAGGGTGATTTTTTAAAAAATGGAATTTTAATGTGAAGGGTGGTTATGATTTGAAGCATACACCTACGATTTCAGCGGAGTTTGAGGATTATCTAAAACAAAATGATATGACGTTGAGTCAATTTGCCGAATATTCAGGGGTTCATCAAAGAACGCTTAGTAATTGG # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 142597-141679 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMNO010000003.1 Paenibacillus sp. EKM202P Paenibacillus_EKM202P_gdna101209_scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 142596 33 100.0 33 ................................. ATCTACTATATCTTGAAGAGTTTTTACGATATC 142530 33 100.0 35 ................................. ATGACTACATCCATTACTACATATGAGAGATTTAC 142462 33 100.0 36 ................................. TTTTAATAGCAAGTACGTTCCGTTGGAGGGTGTAGT 142393 33 100.0 36 ................................. TCATTAATCGTCTGTCTCCGAATAGCCTGTGCCAAG 142324 33 100.0 35 ................................. TGTTTTGGCTCCTGGATCATTCGCTAATATTTTGC 142256 33 100.0 35 ................................. GTTCCCCGATACAGCGGAACCGGTGCATCGTTCTT 142188 33 100.0 36 ................................. CATTGAATATCGCGTCCGTATCAAGCCGGATTCCAT 142119 33 100.0 36 ................................. CATAGCCTCTCGAACTACAGGCATATAGACCTGAAC 142050 33 100.0 33 ................................. CGTAACGAGTTTACTTTGGGTGGAGATGGTGGA 141984 33 100.0 35 ................................. AGATCGAAAAAGTCTCCGTTATACAGATGGGAAAC 141916 33 100.0 35 ................................. ATACCCTACCAATACGGCTGAAATCGAAGAGGCTA 141848 33 100.0 36 ................................. CGGTCTGCGCCACCAACCAAGGAACATTCTCCCGGT 141779 33 100.0 35 ................................. ATCATCCAGCCAGCTTTCCAGCTTTGAATAAGGTA 141711 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 14 33 100.0 35 GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Left flank : CCATTTTTGTGGAAGTAGGTGTGAACACTTGCTCATTTTGATTACGTATGATGTAAGCACGGTAGATAGAGAAGGCAGAAAAAGACTGGCAAAAGTTGCGAAAAAGTGTGTAGATCACGGACAAAGGGTGCAAAATTCTGTGTTTGAATGTATCTTAGACTCAACCCAGTTCCGCCGCTTAAAATATGAACTCGAAGAATTGATAGACAAAACGGAAGACAGCTTGCGCTTCTACAACTTAGGAGATAACTATAAAAAGAAAGTAGAACATATAGGGGCTAAGGAAGCTTACGATATGGAAAGTCCTTTGATTTTATAAGGTGCGAATGTGAAGCTCACATAAAACCCCCGGGTCCTTCGCACCTCGGAATTTGTCGAAAAGCATTGAAAATGCTGTCTATGAGAAAAAGTCAATGGTTGATACAAGCCTTTTTGGCATCAGTTTTTGCGATAATGTGTGGGATTGATATCATTAGGGTATCAATTACTGCATTTTCGCT # Right flank : CAGTTCTCGAATTCTTGCAAGCTGTTCTGAAACATCGTCGCACTCCATGTGAGTGCATGGATCATGACGGAGCAGCTGCCACTTGGTTGTACGAGTGGAGAGTCCTTCTTTATTCGAAATTATGATGCAAGTCCGAGAAGTAGGGGCTGGACATTTTGCGCGGTTTGGAGGGGATGGCGGCGGTACATTACAAAAAGAAAGTAGAGCATATAGGTCTAAGGAAGCTTACGATATGGAAAGCCCATTGATTTTGAAAGGTGCGAATGTGAAGCTCACATAAAAACCCCAGGGCCTTCGCACCTCGGAATTTGTCGAAAAGCATTAAGAAAGCTGTCTATGAGAAAAAGACAATAGTTGATATAAGTCTTTTTGGCATCAGTTTTTGCAATAATGTGTGGAATTTATATCATTAGAGCATCAATTACTGCATTTTCGCTGTCGCACTCTATATGAGTGCGTGGATTGAAATATTAGATAAATAAAAGAGCCACGTTTCACGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 3 152172-151606 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMNO010000003.1 Paenibacillus sp. EKM202P Paenibacillus_EKM202P_gdna101209_scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 152171 32 100.0 35 ................................ TCGTGCATCCGCTCCGAGCGATACAATCAGCCGAC 152104 32 100.0 34 ................................ GCACCTAGAATAGCTGGCATTGCAGCCGCGTTAG 152038 32 100.0 36 ................................ TATAAGGGCAACAAGCCAGCCAAGCGGATAAGACAA 151970 32 100.0 34 ................................ CTAACGGCAAGCCTGGAATGCCCCTCTGAACCCC 151904 32 100.0 35 ................................ TTCTAAAGTGACTGTTATGGCTCAGAATTTTTTGC 151837 32 100.0 34 ................................ AAACTCTCCCGTAAAAGGATCAATACGCAGCACG 151771 32 100.0 36 ................................ TATAAGGGCAACAAGCCAGCCAAGCGGATAAGACAA 151703 32 100.0 36 ................................ TCAAGGGCCATCAGTCCGGCTCGTATGTCCTCTGTT 151635 30 90.6 0 .......................-.G.-.... | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 99.0 35 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : TCTATGGACGTCATTAGCGCCCGCGTTAGACAATGTAAATGCCCTATATCTTTTGCCTGTCCAATAAGATGAAATTGGCTGTCGAACTGGATGCTTGCATAGGTTTTCTACATAGACAATGTCCTGGACGAGCCTCATGGGCACTAGATATGATGGAAGAACTTCTAGGGGGATATGACGACCATTTTCTCCTTACTTTGATTAACAAGAAAGAAAACGGACTTTTGCTTCTACAACTTAGAAGATGACTTCAAAAAAGAAAGCAGAGCATTTAGGAACTAAAGAAGCCGATGATATGACAAGCCCACTGATTTTGTAAGGTGCGAATGTGAAGTTCACATAAAAATCCCGGGTCCTTCGCACCTCGGAATTTGTCGAAAAGCAATTGGATCAGTGATCGTCAGTAAAAGTCAATGGTTAATACAAGCCTTTTAAGCATCGATTTTATGCGAAAAGTATAGAATTGATAACATTAGAGTATGAATTCCTGCATTTTCGTT # Right flank : CATCTATAGTACCTAACTTACATAACAACTCCCAGCAGATTCTTCATGATTGTACCCAAGATATAATTGATAACTTCAGTAATATCGGTATCTTTTTCTTTAAAAATATTATTATTTCCATATGACTATAAAAATATTTGTTTACATAACGAGAATAAATCTAATATGATTAAGAAGTCGCAGAGAAGCTAGTATTTTGGAGGAGTGTGGAGCATATAACGCTACGATAATATATGAGGAATTGCCTATAAATTCACTTAACAACGTAAATTTGGATTATGGTTTTCTGGATATTGTCGATATTGTACCTTATGACACGATTACACAATTTTAAGTATTTGCTTAAAGGAGGTAAATAGATGAATATATTAGCTATTCCTGGTTTATATTTTTATATCTATCTAGGCATAGGTCTTATCGTGGGATATCGGTTTGTGTCTCAAGAATTAACCGAACGTGCACAGGAAATGCGGCAAGACAACGAAGAGGAAAACGATGAG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 153543-152846 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMNO010000003.1 Paenibacillus sp. EKM202P Paenibacillus_EKM202P_gdna101209_scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 153542 32 100.0 35 ................................ GCTTTCTTCCTGTACGCATTTACAAGCCCGATTAA 153475 32 100.0 34 ................................ CCTTAAAACATAGCTTTGGGCGCTCATTATTAAC 153409 32 100.0 34 ................................ GCTACTGTAGCGGAATTAGACGGTTGTCAAAGTG 153343 32 100.0 35 ................................ ATGACTGCATGGGGTGTAATCAGGATCATTGGCAG 153276 32 100.0 34 ................................ GCTTCACACCGTCCCATTTAACAGACTGAATAAA 153210 32 96.9 34 .........T...................... TGCGTGGAAGACGTCGTCAGGCGCAGCTTTTGCG 153144 32 100.0 35 ................................ ACCAACCCTCAGGAGAAAGCCGCTTGCGCGGCTCC 153077 32 96.9 34 .........T...................... TGTGCTGTATTTTCAGCGGCTCTTTTCGCCTGTA 153011 32 96.9 37 .........T...................... GAGTATTTACCCATCCGATATAGTCGCCAGATTTAGG 152942 32 93.8 34 .........T....A................. TTCTCGGTTTCTTTTGAGATTTGGGTATTTTTCA 152876 31 75.0 0 .........T..........C.AA..C-..GA | ========== ====== ====== ====== ================================ ===================================== ================== 11 32 96.3 35 GTCGCACTCAATATGAGTGCGTGGATTGAAAT # Left flank : CCAAGTTCCGTATTCGTGTCAATGTCATCTATCCAGGGGCTATTTCGACGAATATTGATGAAACCACGGAGAAATCAGAAGGGTTAAAGCAGATCACCATCCCTGTGCAATTTCCTGAAGGAGATCAGCCGTTGGCAGATGGACCGGGGCAACCCGAGCAGGTTGCTGATTTGGTGACATTCTTGGCATCTGATCATTCGCGTCACATCACTGGCGCACAAATTGTGATTGACGGGGCAGAGTCGTTATTGTTTTAGAAAATGGAGCAATATCTGGGATAGAGAGAGGTTTTGTGGTATCTTAAGTGTATTCTTACTTACGGTGCGAATGTGAAGCTCACATAAAAACCCCAGACCCTTCGCACCTCGAAATTTGTCGAAATGGATTTATATTCATTTTATCGTTAGAAGTCAATAGTCGATTCAAGCTTTTTAAGCATCGTTTTTTTCGAAAATATATGGAATTGATACCGTTAGGGTATTAATTCCTACATTTTCGCT # Right flank : CGGAGTAGCTGCACTTGTTCGCACAAGTGGAAAGTGCTTCTTGTTATCTGTACCATTAAGCAAATTGGTGAATTTGATGAAATCGGGCATTTTACCCGGTTTGGAGGGACGTGGCGACTCAGTATAAATCTGTGTGGGATGATCTGATCTTACAGCAAAAAGATGATTTATCCTTCTATGGACGTCATTAGCGCCCGCGTTAGACAATGTAAATGCCCTATATCTTTTGCCTGTCCAATAAGATGAAATTGGCTGTCGAACTGGATGCTTGCATAGGTTTTCTACATAGACAATGTCCTGGACGAGCCTCATGGGCACTAGATATGATGGAAGAACTTCTAGGGGGATATGACGACCATTTTCTCCTTACTTTGATTAACAAGAAAGAAAACGGACTTTTGCTTCTACAACTTAGAAGATGACTTCAAAAAAGAAAGCAGAGCATTTAGGAACTAAAGAAGCCGATGATATGACAAGCCCACTGATTTTGTAAGGTGCGA # Questionable array : NO Score: 9.07 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCAATATGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.00,-3.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //