Array 1 37450-38618 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUAG01000011.1 Pseudomonas aeruginosa strain AZPAE12156 AZPAE12156_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37450 28 96.4 32 ..................C......... TTGGAAACAGGGCTGCTTTGGATGTACCCAAG 37510 28 100.0 32 ............................ TCTTCGCCGCGCTGGATTCGAAGGAGCGCCGC 37570 28 100.0 32 ............................ ATGTAGCCCAGCCCCAACGGCAGATCGCCAAC 37630 28 100.0 32 ............................ GATCACTCCCCGCTGCGCATGCAGCGTTCCCC 37690 28 100.0 32 ............................ TGAGAGATCGGGCGCTTTGGGATGTGACCAAC 37750 28 100.0 32 ............................ TGCTGGGCTTCTACAACCCGCGGGTGGTGCTG 37810 28 100.0 33 ............................ TTAAAGGTGCGTGATGGAATGGCTCGGCGCGAT 37871 28 100.0 32 ............................ TCAACGACCGCACAGTTACTCAGTACGTCGAC 37931 28 100.0 32 ............................ AAGCGGCAGGCATCGGGTGCTCAGGCATCTGA 37991 28 100.0 32 ............................ ACTCTGAATGCAGGCGCGAAAGCGCCTCACCC 38051 28 100.0 32 ............................ TCGAAGAAATCACCATCAACGCGTAGGAGAAC 38111 28 100.0 32 ............................ GGTAGTACTGGCCGCGATCACGGTGCCGGACG 38171 28 100.0 32 ............................ AGCACTTCGGACTCCGACATGGCCGTGATGGA 38231 28 100.0 32 ............................ GAGGGGCCGTATCGACGGTGATTGATGCGACA 38291 28 100.0 32 ............................ AGCAAGGCATCCGGAAACGGGCCTTGGGTCAC 38351 28 100.0 32 ............................ ATCGCCGCCACCGTCGCCGCCATCACCATCCC 38411 28 100.0 32 ............................ TATACCCGACTTTTCAGCCCCGCCGCCCTCGC 38471 28 100.0 32 ............................ TGACGGGCCGATTTATGAATCAGCCCCCTTTC 38531 28 100.0 32 ............................ TGGGCGATCTTTTCGAGGTGGTAAGTATGCGC 38591 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : TAGAGGGCGACCTAGAGCTTGCGGCGCAACACTGTAGTGGTCTACTGATCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 27359-27686 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUAG01000032.1 Pseudomonas aeruginosa strain AZPAE12156 AZPAE12156_contig_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 27359 28 100.0 32 ............................ GCCACAATTCGTCGAGGACCAGGACCGAACCA 27419 28 100.0 32 ............................ ACGCCGAGGAAGCCAACGAAGCCGCCAGCGAA 27479 28 100.0 32 ............................ TTGACTGCTGGGGCCTGACGCTCATCGCGCGG 27539 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 27599 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 27659 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 36710-36202 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUAG01000032.1 Pseudomonas aeruginosa strain AZPAE12156 AZPAE12156_contig_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36709 28 100.0 32 ............................ CGCACGGGGGACGAGTTCGCAGCGCATTCGCG 36649 28 100.0 32 ............................ ATGGATGTCGGAACATCCCAGGTCACGGTCGT 36589 28 100.0 32 ............................ ACTTCTGCGCCTGACGCGTCGGTCATGACGAT 36529 28 100.0 32 ............................ AAGAGGATGACGGTGAGCCGTGCCCGGAATGC 36469 28 100.0 32 ............................ TCGCTCTGCACCAGCGGCGCATTGGATCTGGT 36409 28 100.0 32 ............................ GACTTGAAGCCACTGCGCAGGCACGCCACCCA 36349 28 100.0 32 ............................ CTGCAGTGGAAGACCTGGGTGCGTCTCGCCCT 36289 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 36229 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GGGATGGGTTGACCACTACAACA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //