Array 1 28366-28030 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIGI01000040.1 Levilactobacillus brevis strain SF15B SF15B_contig_124, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28365 29 100.0 32 ............................. CCCTTCTTTATCCACTATCGCAGTCGCTTAAA 28304 29 100.0 32 ............................. CACCCGCGGGTCAATTATTCCGTTGATGTAAC 28243 29 96.6 33 ............................T TGTTGACCATTTGCTGATGTGATTTGTCGGCTG 28181 29 100.0 32 ............................. GTATCAAATGGATGGCTTAGCTTTCTTCTTTG 28120 29 100.0 33 ............................. CAATCAAAAATGGCCGTCAATCCGTCTGTATCC 28058 29 82.8 0 .............A....A......A.GG | ========== ====== ====== ====== ============================= ================================= ================== 6 29 96.6 33 GTATTCCCCACATGTGTGGGGGTGATCCC # Left flank : TGATTTTAATGTGATGGGAGCGGCCTTTTGCCAGGCCCATCCGGAGCAGGTCACCCAACAGCCGCTGGGTCAGCACCATCAGGCTAGGGCAATAGGGATGCGGGCGCTGGTCGACTTTGCGCGAGAGTATTATCGAGAAAAAGATCGGCGCGAGATGAGCTAAAAAGTACAAGATATAAAAGCGTAGTTGTTAGCCGTGGTGAAAGGAGTAGCGGCTACGTTTTATTGTATTATATAGGCTTCTATGCCTTTGATAGTATCAAAAGGTAGTCACGATACTTTGGAACAGGCTAGTGATTCGGCAGTCTGGCTACGTAGATTAAGCAACTGGATCGTTACTAGCAATCTAAGTCGAAATTACTTACAAAAGTAAGGCCACAAATTCCAGTTGGATAGATGATTGTTAATCAAATATGAGTAGGGTATGCTTTAATAGTCAAAGTGATAAAATTTGCTGTTTTCTCTAAACGAAAATGCTGGTATATCAAGGATTCTTTAGT # Right flank : AGGCGTTTCAAAAATGATTGTAATGCTGTGCTTAAATCAAAATAGACTTTTTATGGAAAGATAGTTGATAGAGCAGACCACCCAAGTACTAGCAGGCCATTGTGATAGGATGCAGGTGTTGATTGATTTTGCATGAGGACATTATCGAAAAAAGGATCGGCGTGAGATGAACTTATCGAGGAGTCTATCGGGTATTCAGGCACGGGGATCGTATGTATAAATGAGGCTAACTGTCAAGAAATAAAGTGCTGGTGGTTGACAAAGTTAATGGCGCGCGTTATATTAATAATCGAACGATCGATCTTTTAAAAGGAGCCAATCATGCGAGAAAAAGATACGGCAAAACAAACGAGTATTATTGATGAGGTCAGTAATATTATTTTAAACGAGGGAATTGCAGCAGTTTCAATGTCCAAGATTGCTAAAGCAAGTGGCATTTCTTCATCAACGATTTACGTGTACTTTACGGATAAGGAAGATGTGTTAAAACAAGTTTATTT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATGTGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 23835-24107 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIGI01000024.1 Levilactobacillus brevis strain SF15B SF15B_contig_94, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23835 29 100.0 32 ............................. GGACAGTACCAAGGTATTCCACAAACAACTGT 23896 29 100.0 32 ............................. CTGCTGTAGCCTTATAGCCCAACAGATTTTTC 23957 29 100.0 32 ............................. AGATGGCCTTTTTCGGCTTAGCTGCCTTAGTG 24018 29 96.6 32 .............G............... GCTTATTGTGTAGCCCTCTTTTTTGCAACCGT 24079 29 82.8 0 ............T....A......G..TC | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 GTATTCCCCACACATGTGGGGGTGATCCT # Left flank : CGTATCCGGCTGTATTCCATGATAATGAAGTTGGCGGGTATACCGTAACTTTCCCCGATATTGAAGACGCTACAACCAGCGGCCAAACCCTAGGCGAAAGTCTGGTCAATGCGGCAATTGTTCTCGGTCAGACACTCCATGATCAGCCAACTGTATTACCATCTGCGACGACTATTACTGAATTAATGCATCAATACCCCATGGCATTTATCCAGTTTGTCGCGGTGGATTTAAACCAAGTCATTGAATCAGCAGTACCGACTGATCAAGTGGACCTACAATTGATTCAGTAACTGATGAAATAAAGCGTTGTGAGCTGGTTCCGATTATGGGGACCGGCTTTTTATTAGGTGTGAGAGTGAGTTGTCGGGTGGTGTGCCAGATTGCCGTTGCCACGTTTCTGCGGTATGCTATAAAATATAAATGAGTCTCACAACGAAACTCATAAAAAATGGCGGTTTTGAAATTTTGGAATACCGGTTTGGCGGTGTTTCTTTAGT # Right flank : CAATACTGGGGATGGCTCTAACACCGGGGGCAACACTGATACCGGTAATGGTTCAAATACCACTGGTGATGACAACAGTTCAAGCATCTCAGTATCAATCAGTTCAAACGATTCTGACGAACAGATCAAGCAAGCTGTCGCAAGTCTTAAAAAGATTGCCGCTCGTTACAGCATTAGCACTACCGCTTTAGATAACGTGGTTGCTAAGGCATCAGATCCAATGTCAGCAACTGACAAGGCAGAAATTGTTGCTGCGTTCAGTAACGTGGTTTCAAAGATTAAAGATATTCAGAACTCAGATCAAAACACTGTTGATCAGAATACTGGTGACAATGCTTCAGATCCTAATCACGCCAATACTGGCTACACAACTAATTTGAGTGGAACGGCAGCAGCCAATAAGCGGCTTTCCGAGAATAAGCTAGTCCCAGTTAAGCCAGATTACGACACTACGCCAATTAACCCACACGATAAGAAGTATCTGATTGATACAACTGCTC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //