Array 1 10976-13996 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGYI01000015.1 Trueperella bernardiae strain LND_65A18 PROKKA_contig000015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 10976 29 100.0 32 ............................. GTGCCGTGCGGGGCGGGCTATGCTTGAGTCAT 11037 29 100.0 32 ............................. AATGCCATCGCGCTCTCCCAGGTGGCCGCACA 11098 29 96.6 32 ....................C........ AGGGGGAGGGCAGTTTAGACACATGCCCAGGT 11159 29 100.0 32 ............................. GCCGAGGATTATGCGTCGGTGGTTAAGGCGGC 11220 29 100.0 32 ............................. GGGCGGAAGGTGCGTAAGGGCGAAAAGGCAAT 11281 29 100.0 32 ............................. AGATAGGCCCATGCGGCCGGCGAGCCACTTCG 11342 29 100.0 32 ............................. GCGCCTACCCGTGGTGGCCTGCCGATAAGACA 11403 29 100.0 32 ............................. GAATCACCCTTCGCACGAACCTTCACATTCCC 11464 29 100.0 32 ............................. TGACGCGGTGCGCGCAATGGTCATGGTGCTTG 11525 29 100.0 32 ............................. TGACGCGGTGCGCGCAATGGTCATGGTGCTTG 11586 29 100.0 32 ............................. ATGACGGAGTTCTACGAGGGCGGAACACAGCT 11647 29 100.0 32 ............................. GGTATTAGAGAACACGGGCGGGTGTCGAGCAC 11708 29 100.0 32 ............................. ACCCGCACACACCACATCCGCCGGCGAAACCT 11769 29 100.0 32 ............................. CGCCCGGCGCTTGTAGCAGAGCGGGATGCCCT 11830 29 100.0 32 ............................. GGCCCCCCGCCCAGGTCAAGCACTACCCGCTC 11891 29 100.0 32 ............................. GATCTCGCTCGGAGCGTCGAGCGCCGCGCCAA 11952 29 100.0 32 ............................. ACGATCGCTTTCGTCTGCCGGGACGACACCGG 12013 29 100.0 32 ............................. TCGCCACTGCAGCTCATGGACTGGCTAGAAGA 12074 29 100.0 32 ............................. AATGTTCTCCACCAGTTTCGGCCCATATGTGT 12135 29 100.0 32 ............................. AAGGCGACCACATCGAATAACGAAGGAAGGAA 12196 29 100.0 32 ............................. GATCTTGCGGGGTGTGAGGATGTGGGCCGTTG 12257 29 100.0 33 ............................. GAACAGCGCGCGTCACAGCATCCTGCACGCCAG 12319 29 100.0 32 ............................. GTTGGTGGCGTCTTTTAAGCAGTGGAAGAAAT 12380 29 100.0 32 ............................. TCGTACAAGTCGCTCAAAATGCGAATAAGGGC 12441 29 100.0 32 ............................. GTGAATGAACACGGGCATGTCTACCAGTATCG 12502 29 100.0 32 ............................. CAGCTCATCTGCCTAGCCGAGAGTCACGGCAT 12563 29 100.0 32 ............................. TTGCCGATCGTCGCTCGCGCCATACCTGAATC 12624 29 100.0 32 ............................. GAAAGCGCCGAAAGAGTATAGCGCGAGGTTGG 12685 29 100.0 32 ............................. AAGATATCGGCTTGTCACACTTGGCACAGATC 12746 29 100.0 32 ............................. CTTTGTTTTTGTCTGGTGAGGTGGCGAGGATT 12807 29 100.0 32 ............................. CAGGCCGCCGTCTGGATGGAGGTTACCCGCCC 12868 29 100.0 32 ............................. CGCTACCCCGATCAAGGTGGCCACGGTGGCGT 12929 29 100.0 32 ............................. CTTAGCCCGGTCGCTGAAAGGAACAGGACGAA 12990 29 100.0 32 ............................. GTGGACGACAAGATCCGTGACCGGGACACAAT 13051 29 100.0 34 ............................. AGGGCAAGGCCAATGTGAACCGCCACGTCGAACA 13114 29 100.0 32 ............................. GAGCAGCTCGGCCATCTGGTCGTGATTCCAGC 13175 29 100.0 32 ............................. GGGAAACCCCACCGCGTGTATCACGCTGACTG 13236 29 100.0 32 ............................. GTGTTCTACCCCGACCCGTCCCTTCCCGTCGT 13297 29 100.0 32 ............................. CGTGCTACCGTTCGCCACACCCAGCAAGGACT 13358 29 100.0 32 ............................. TGCCAGAAGTCCATCCGCCTACTCATCGAAGA 13419 29 100.0 32 ............................. GTCATTGTGTTCCTGGATCACGCTTGCGATAG 13480 29 100.0 32 ............................. AATCCAGACGCGGCCAAGTGCTTAAAGAAACG 13541 29 100.0 32 ............................. ATTTCATTCCTTTCCTGCCCTGTTCAGGGCCT 13602 29 100.0 32 ............................. AGCTGAGCCGGGCCAGCCGATGCTTTGACTTC 13663 29 100.0 32 ............................. ACTAAGCGGGATCCATAGGTCAAGGTCGGACA 13724 29 100.0 32 ............................. GGTGGTAGCCGTGTCATTGTCCGGGGCGTTGG 13785 29 100.0 32 ............................. CCACCTATAAGGGAGAGCGCCCGCGCCCACTG 13846 29 96.6 32 A............................ TGGGTTGGGTGCTCGCTGGGCTGGTGCTGATC 13907 29 100.0 32 ............................. CAAGAGCGGGGCGTTTTGGGTATTGGCGCGGG 13968 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ================================== ================== 50 29 99.8 32 CTCTTCCCCGCGCGAGCGGGGGTAATTCC # Left flank : GGGATGCTGGCCACGCTCATGGAAATCCTCTCGCCCCACCTTCCAAGCCGCGACGACGACCGGCTGATCGGCGGGAGAAACCACGAGGTAGCCGGTCACACGCAGTACGGGGCCGACTAGTGTTCATCGTTATCACCGCGACCTCCATCCCAGATCACCTCCACGGCTACCTCAGCCGATTCCTGTCAGAGGTGGACGTAGGCACGTACGTTGGCAAGGTGTCGCCCGTGGTGAGGGACAACCTCGTCGGCCGCTGCCGCGAAGGAGCCGGGGAGGGACGAATCGTCGCGATTAGTAGCGACACGGCGATGGAGCAAGGCTTCAGCGTCCAGACATTCGGCGAACCCACCCGTATGATTATGGACATGGATGGGATTCTTTTGAGCTCCACCGTGACCGGCGTGCTTGACGACGACGGCTCGCAGTCCGAGCCGCCCATTCTGGACCGGGAAAACGGGTCAAAGGGAGGCCTGCTTCAGTAAAACCACAGGTGGGATGGT # Right flank : CACCTCGAAATATCTCGATATCGAGGTGGGATCTATTTGGCGAAGCGACTTCCAAAAATTGTCGGAGGCGGGAAGTACGCTGGCACCAACAGACAACGACAAGGAGGTTGTGCCATGGTAGTCGGTTACCGGGCGATCATGCGGTTGCAGGACGGCGAGGATGCCGTGACTGTAGCTGAGGAGCAGTTGCATCGCTGGTTGGACAAGAAGACGAAGGGACGGAACCAAACGCGGGTCCGTGCTGATTGGAAGGGCACAGGCGCCCACCAGCTGGGGCAAAACTCCACGTTGAGGGTCTATCATCACGCAGACGATGCCGATTCAAGCCGACGAGGGTTCTACCGGCTCACCAAGGAGAACGAGAACGGCAAGTTTACGGTGTCGCTCTACGCGGCGAGCCTGCCTCGGATCCGCGAATACCGCCAGACAATCGTGGCCGAAACAGCTTGGGAGCCGCCGGAGCACAGTGGAAAACTGCCAAAACGTCAGACGGGATCAGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCGCGAGCGGGGGTAATTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //