Array 1 1-1272 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDLV01000059.1 Chryseobacterium candidae strain JC507 NODE_218_length_1226_cov_26.816477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1 43 91.5 30 ----........................................... TGGTCAGAATCACTGGTATTACGGTCATAT 74 47 100.0 30 ............................................... ATCACCAAGTAGAAGACGTTAATTTTATGG 151 47 100.0 30 ............................................... GGGAATTGTCAACCGATGAAGTTGCAGCGG 228 47 100.0 30 ............................................... TCGTAAGCTCTTGCAGTTGTTACAGCTCTA 305 47 100.0 30 ............................................... AGTGTCTGAATCCGGCCGCGTCAATTCCTA 382 47 100.0 30 ............................................... ATGCAAATAAACAGATTATTGACTTGAAGA 459 47 100.0 30 ............................................... ATGCTCCAGCTGCTCATATTGCAACTTTCG 536 47 100.0 30 ............................................... ACATTCATTAATATAGGGAAGCAGCTTATG 613 47 100.0 30 ............................................... TGGGGCTTCCAACAGCGAGTATCACACCTT 690 47 100.0 30 ............................................... TCGTACTTGTTAAATTAGGTTTAACAATCT 767 47 100.0 30 ............................................... CCAAATGAAAAACGTACTGCATTAAAGTAT 844 47 100.0 30 ............................................... AAAAAACTTGCTGAAAAGGTTGTTGATAAT 921 47 100.0 30 ............................................... AAGATGAAGATTTTGGGCTATGAGCCATGG 998 47 100.0 30 ............................................... AACCTATCAGTTAGCTGTACTGGATAAGCA 1075 47 100.0 30 ............................................... ATAAGCTTTCCGAAATGGAGACAACAGCCT 1152 47 100.0 30 ............................................... ATCGAATGAATTAAAGAACTGATATGAGTA 1229 44 93.6 0 ............................................--- | ========== ====== ====== ====== =============================================== ============================== ================== 17 47 99.1 30 GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATGAGTCACAGC # Left flank : | # Right flank : | # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATGAGTCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.70,-2.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1353-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDLV01000054.1 Chryseobacterium candidae strain JC507 NODE_160_length_33686_cov_30.074423, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1352 47 93.6 30 C...AA......................................... TAAAAATCCACATAACATTGTAATGTTTAC 1275 47 100.0 30 ............................................... AAATATCTGAAATACTGATCTGCATTGGTA 1198 47 100.0 30 ............................................... CTTTCCAAAACATTCCCCTCTTCATCTACA 1121 47 100.0 30 ............................................... TGACGATCCCGGAACTTAGTCCCATTGATC 1044 47 100.0 30 ............................................... TTTTCGGATCTACACATTCCGCAACTACAT 967 47 100.0 30 ............................................... TTTTGCGTTAAAAGCAACAATCGTTCCATC 890 47 100.0 30 ............................................... TTTGAGTATAATTAAAAGATAACAGTTATG 813 47 100.0 30 ............................................... TCGATTTGCTTATGTATTCAGATCATTCGA 736 47 100.0 30 ............................................... GCTGATCTTGAATTTTCTCAGAGAAAATAA 659 47 100.0 30 ............................................... CTATTCATGTGATGGGACTACCAATCAACA 582 47 100.0 30 ............................................... TTTACGGTCATACTTATATCGTAGGACTCT 505 47 100.0 30 ............................................... TGAGGAAAAATATCAGACAAAATCATACGA 428 47 100.0 30 ............................................... TGTTTATCTTTTGGCTTAGTTTCCTTATGC 351 47 100.0 30 ............................................... CCCTCAGATAATTGACAAATGATTCAACGC 274 47 100.0 30 ............................................... TTTATTTACTGCAAATATCGTTCCTAGTTA 197 47 100.0 30 ............................................... TAACTTCTTTCGTAGCCAAACTACAATTTA 120 47 100.0 30 ............................................... TATCGGTGAAACTGTAACAAGTGTTAATTA 43 43 91.5 0 ...........................................---- | ========== ====== ====== ====== =============================================== ============================== ================== 18 47 99.2 30 GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATGAGTCACAGC # Left flank : GTTTAATATGATACCGCAGAAAAGTATACATAAGGCTTGGTCCTGAAAAAGTTTAAGTGTTTAAAACTTTTGTGTGTTTATGGTTAAAATAATGAATATAAAAGCTTAAACAACCTCATGTAAAAAAAATGAAAATTAAAAACATTCATTCTATTATTACATTTTATCCCCATCACCCCTATCATAAATTTACATATATATTTAATAATATCCAGTAAATATTTTTACCTTAAATCAATAAATAGAAAATAATTCATATATTTATCGCTTACAAATTAAAATTATACTATGAAAAATTTCAAAAAAATTTCTAGAGATCAGTTAAAAAAAGTAAATGGTGGCGGCAACAGAGATGGTATTTGCCAACCTCAATACATGTTAATCTGCGATGCTATTGGAATCTGTGGTCCAGAACCAGATACAGCTTGTAACTGCTATTGCGTTCCTATTTAATAAGATATAATCCCTCTAATTGAGGGATTTTTTATACTTTATATTCT # Right flank : A # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATGAGTCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.60,-2.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1-579 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDLV01000052.1 Chryseobacterium candidae strain JC507 NODE_155_length_533_cov_27.322702, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1 44 93.6 30 ---............................................ GGTCAACCTTCATACCCTGAATACGCGAAC 75 47 100.0 30 ............................................... ACCTTGCTGATAAGCTGTCTTAGGCATTAC 152 47 100.0 30 ............................................... AGGTCTGATTACAAGTAATTCGCTATCTTT 229 47 100.0 30 ............................................... GCCGTTGAATTATCTTCGAAGTATGCAAAG 306 47 100.0 30 ............................................... AAATATTCTTCAAAAGGATTATAATCAGGA 383 47 100.0 30 ............................................... AGACTCATTTGAGTAGTATTTTGCTCGTTA 460 47 100.0 30 ............................................... AACTTTATCTTCTGCAAGTTAACCAACTTA 537 43 91.5 0 ...........................................---- | ========== ====== ====== ====== =============================================== ============================== ================== 8 47 98.1 30 GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATGAGTCACAGC # Left flank : | # Right flank : | # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATGAGTCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.70,-2.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 70164-69580 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDLV01000053.1 Chryseobacterium candidae strain JC507 NODE_157_length_70117_cov_27.514912, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 70163 45 95.7 30 --............................................. GCGAATTATATTGTAAAAAACGGCGAAAGG 70088 47 100.0 30 ............................................... TCTTTTCAAACAAATAAATTTTAACATCAT 70011 47 100.0 30 ............................................... CCTAACAAACCAAGAATTAACGCGACTTTT 69934 47 100.0 30 ............................................... GGGATCAATACAGATAAAATGATCATTATC 69857 47 100.0 30 ............................................... AAAACAAACCTCAAACATTGAGCCGGTCTA 69780 47 100.0 30 ............................................... AATTATAAGGTTAATGAGACTTTTCCATCA 69703 47 100.0 30 ............................................... TGGGTTGCTATAAATAATTGACAATTATTG 69626 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 8 47 99.5 30 GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATGAGTCACAGC # Left flank : | # Right flank : CTCAAAAAATAATCTACTGAAAACCAGTAGATTATTTTTATTTTTAGAAATTAAAATTTAGAATAATTCAAGCTGCTGGAAAGTTGGTGGCGGCTCTTCTTTATTTCTGGCAAAAAAGATCTCGATGTCTCCAAACTGTTTATCTGTAATGCACATGATGGCCACTTTCCCGGCTTTTGGAAGCATAAATTTTACCCTCTTAATATGAACTTCAGCATTTTCACGGCTTGGACAGTGGCGTACATACATTGAAAACTGAAATAACGTAAAGCCGTCATCAATTAATGCCTTCCGAAAGCGGTTCGCATCTTTCATATTCGCTTTCGTTTCGGTCGGGAGGTCATATAATACTAAAACCCACATAATTCGGTATGCATTAAACCTTTCGGCGTTCATTTTTGGTGACTATTGTTTGTTTATCGTAACGTTTGCAGCCCGACCTGAGTGGAGCTCTTTTTGCAGATTTTGGTGCTGGAAAAATGCGGTTGGAAATCTGCAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATGAGTCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.60,-2.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //