Array 1 15688-15327 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030854.1 Runella sp. HYN0085 plasmid unnamed4, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 15687 30 100.0 37 .............................. ATTTCTCCTACTTCAGCGCCCGTTTTGCGGTCTATCA 15620 30 96.7 34 .T............................ GTAATAGAAAACTCTATCAATCCCCGCCCTCTGA 15556 30 100.0 37 .............................. CGCAGTTCTATTCAGCCGCCGAAGATAAGCTGATTGA 15489 30 100.0 36 .............................. GATATGTCACCGATGGCTACAAACGTGCTGAAACGG 15423 30 100.0 37 .............................. AACGCATCTGCATGAACTTAGCCCAATCATCCATAGT 15356 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 99.5 36 CCCTTAATCGTACCTCAGTGGAATTGAAAT # Left flank : AATCGGTCTTGGAACCACTGCCGGCGTCGGTAAAAGCAACCTACTATTCTTCCAAACAATTGAGTATTTGGTTAGGGATGTATCAGAATGATTGGGAAGATTATATGCCTATTGAATTTTTAAGGAAATTATTGGAAGAAAACCCGCTTATCAAAGCCGTCAGAGAAATTGCTTTAGAATTCAGGCAACTCATGAAGGCAAAGCAAGGGAATCAACTTCAGGATTGGTGCAATAAAGCTTTAGATTCTGGAGTGGAAGCGCTGAAAGGATTTGTCAGGGGAGTTAAACAGGATTTTAAAGCCATTTTTCAAGCCTTCACCTCCGAATGGAGCAACGGACAGGTCGAAGGACAAGTAAATCGGCTCAAAAATATCAAGCGTCAAATGTATGGAAGGGCGAGTTTTGAGCTGCTCCGCAAAAGAGTCATAATGATGGGAATCCCCGACTTTCACCAAATGTGATGATGAACCATTTTCACGCCATTTTACACTAAGTCCCCG # Right flank : AGCGGTAACACTCTGCAAGCAATGTTACAGGCCGATCCTTAATCGTACCTCTTTAAGTCTGTATCTGGCCAAGCTCCTTCTCCAAAAACTCCAAAATAGAGCAAACAATAATGTCTTCATCTTTTACATATTGCTCTCCCTCAGGTATGATAATATATTTAAAATCAGGTGCTAAATCTTTTATGGTTTCGTGGAAGCCCTTTGATACTTTCGGAGAAGAGGAATACTTTATCTCAATACAGGCTTTTTTGCCGTTAGGGCTGATTAATACTAAATCTGCTTCCGCTCCTGAGTGTGTCCTGTAAAAGTAAAACTCCCACTCTTTGCCTGTTACACGTCGAATTTGCTCAATTACATATCCTTCCCAGGAATGTCCCAAAATCATGTGTCCCAACAAGTCATAATGGCTATTTATACGCAACAGCTTATGCAATATTCCTGAATCTCTTATGTAAACTTTCGGAGCTTTAATGAGTCTTTTGCCGATATTGATATAATAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTTAATCGTACCTCAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 2 20335-17500 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030854.1 Runella sp. HYN0085 plasmid unnamed4, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 20334 37 100.0 37 ..................................... TAGAGCAGACGTCTGCAACGGGCTATGCTCAGACAAT 20260 37 100.0 36 ..................................... TCAGGAAAAAGTTTCGGGTAAAAAGGCCGAGAATAG 20187 37 100.0 36 ..................................... TCCATTCATCCACCTGCTTGCCCACATCGGGCTTAT 20114 37 100.0 35 ..................................... TAAATCAAAGTTTTCAGGCACTAAAGAACGCTCAA 20042 37 100.0 36 ..................................... TAGCCCTCAGCACGAGGGCTTTTTTTTGTACGCCAA 19969 37 100.0 36 ..................................... TTGGTCTTGTCAAAAGCGGCCCGGTTTGCGTTGTAA 19896 37 100.0 36 ..................................... TGTCAGATTTACCGTTGATGGTACCGCAACAAATAC 19823 37 100.0 37 ..................................... ACGCTGATATTGTATGGGGGTTGGTTCTTCAGGACTT 19749 37 100.0 38 ..................................... TCAACCCTATAAAAATCAATAAAATGTTTCAAGGTAGA 19674 37 100.0 36 ..................................... CCCATCCTGTAGCGGTTCTCAACTGAAAATTTGAAG 19601 37 100.0 36 ..................................... CTAAGCTGACATGGAACAACGGGGCAGTAGATTGGA 19528 37 100.0 38 ..................................... ACGTTTTCCCAGAAATGATTCTTAGCCGCGACAGGTCT 19453 37 100.0 37 ..................................... AAGGGTACGGACGCATAAAAGATATGAAAGCCCTCAG 19379 37 100.0 39 ..................................... TGGCATGGTTGATGTATGATCGTACGTATTTCAGAACAT 19303 37 100.0 37 ..................................... CGGCATTGGTTGCAACTCTATCTTCTCCCGTAGCGAT 19229 37 100.0 38 ..................................... ATACAATTAAGGAAAATGTGGGCCTTACTGATGACCAG 19154 37 100.0 36 ..................................... TACGATTGAACGGCTTGAAAATACCCTGCTTTTGTA 19081 37 100.0 37 ..................................... GGTTTTCCGTTCTGAACTTGTAAAAATTAAGGTTCCC 19007 37 100.0 37 ..................................... GCATTGACCCAAGCGTGTTCAAACTTCAAATTTCCAA 18933 37 100.0 37 ..................................... TCCGACATCGTGCCTAAAATCGTAGCCTGAAAAGTAC 18859 37 100.0 35 ..................................... TACTTCCTGATACGCTCAATGATAAAAAGAGCCGC 18787 37 100.0 37 ..................................... CGCCTGTTACTAAGCAAATTGACTACATCTGCTTTTG 18713 37 100.0 37 ..................................... CGTGGTTTCTGATTTTAACCTTACAATCCTCGCCGCT 18639 37 100.0 36 ..................................... CGCACTAGCTCGTAATACTTGATAATCGCCTCAAAT 18566 37 100.0 36 ..................................... AGGGAAATCAGGCGTTGGCAATGCTCACCAATCAAC 18493 37 100.0 35 ..................................... TTTAAAATGGGAGTTGATAGAGGTCTTTTGAAAAA 18421 37 100.0 35 ..................................... ATGGTTCGCCCAACACTTCAAATATCTTTCTTAGT 18349 37 100.0 38 ..................................... CGGTAGTGAATCAGGCCCACCAGAAACGGAAACGCAAC 18274 37 100.0 36 ..................................... AAACTCGTTTGCCGTTGTTGGGGTTGGCGTTGTTGG 18201 37 100.0 36 ..................................... TATCCACACATGGAGCAAGGGCAAGAAATAAAAATA 18128 37 100.0 36 ..................................... ACCCTTGCGGATGGTTCAGCCTATGCAAACGCCTTG 18055 37 100.0 36 ..................................... ACATAATCCAAGCTATCTAAATGCTTATTCCAAATT 17982 37 100.0 37 ..................................... CTGCTTGGTGGGCTTTTGTTCACTTGTGCAGTAGCAG 17908 37 100.0 36 ..................................... TTCCAAGAGACTTGCGCCTTCTTAAATCGTCCCGGA 17835 37 100.0 38 ..................................... TTGGTTCTTTGGGCGGGTATTTCTACTTTTTGCCGCGT 17760 37 100.0 40 ..................................... AGCAAGCCGGGTAACCTAACCCGACAATTAGCGTCTATGT 17683 37 100.0 36 ..................................... CTAATGTACACGGGCAAGGGGTTAGTGCCCGAATAG 17610 37 100.0 37 ..................................... TAGTTTTTCAATTCGGCCAGCTTGCTCGCAATCTTCA 17536 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 39 37 100.0 37 CTTTCAGAGCACATTCCAGCAGAATAAGGATTGAAAC # Left flank : TATAAATTTGCCGAGTACAAAGACCGGGTATATGAGACTTATCGCACGCAGTTGTATTGTTATGCGTGGCTGATTGAGGAGAATTTTGGCCACAAAGTGGAGAAAGGCTTTTTGGTCTACACCCGAAGCCGAAATAAACTGATTGAAGTACCGATTACGGAAGAGAACAAGCAGGAAGTAAAAGACACGGCAAAGGCGATTGGACGCATCATTGAGGATAATTTTTTTCCAAAAGCCACAAAATACAAAGCGCGGTGTGTAGGTTGTACATACCGAAACATGTGTATTCGGTAAGGGATTCGGGGGAGTTTCCGAGCGGCAATTTATTTTCATGAGCAAAAAAACAGGCATTAACTGATTTACAATGAGCAGGTTATGTTTACGGAAAGAGGCAGAAAATACCGCTCAAAAAGGTTCTTTGACGTATTGTTTTGCAAAAAGGGAGCTGAAGCAAAATACATCTACTATATTTGTAATCAAGCCGTTAGCGCACCAGACGG # Right flank : AACGAATTTTCATGAATCTTGGTAAGCAACCTTACTGTAAATTCCTATGAAAGTGGTTCATCGTCACATTTGGTGAAAGTCGGGGTTTGGGTCGTAATTTTGAAGAATGGACTCTTCCTTCCTTTTGCCTTCCGAGCTCGACTTAGAATTACTTGATTACGAACTTTACCCTGACCGGATTGATTTGCAGGTGATAAGCACAGCCTCTTCTACCTGCTGTCCTGTTTGCGGGCATCTTAGCCACAAAATTCATAGCTGCTACCATCGAATCATTCATGATTTGCCCGCCAGTGGCCGAAGAGTTCGATTACAGCTGCAGGTTAGGAAATATTTTTGTAAAAATACCGACTGCCCGCGCCTGATATTCACTGAAAGATTTGTCACCGGTTTAGCCAGTTATGCCCGTCGATTTGACCGTTTGAATCAGGTACTCACCGGGATGGGGCTGGAATCAGGAGGGAATCCTTCTACCCGTCAAGCCCGGTATTTCTCCGTTAAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGAGCACATTCCAGCAGAATAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA //