Array 1 515014-516890 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRU010000001.1 Nostoc sp. FACHB-110 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 515014 37 100.0 35 ..................................... AAATGAAAGTAAGCCCAACCAGTAAGCTCTTTAAT 515086 37 100.0 37 ..................................... GAGTTATACAACAATTTAAGAAGTTACCAACGGCAAG 515160 37 100.0 42 ..................................... CTTGAAGCTTTCTTAGGTAAAAGACCAGACGGTTTTGTTTGT 515239 37 100.0 36 ..................................... GCAATAGCCCCTTTTGTATCTCGCTCAATTCGTAAG 515312 37 100.0 32 ..................................... ATCACCTAGCCTTACTATAATTATTGTGGTAT 515381 37 100.0 39 ..................................... ATGCTGATATGGATGAGGCTTTGGAGTCGATGCTTTTCA 515457 37 100.0 37 ..................................... AAAACATTCAAAGACGCCAACCCACCAAAAGATCAAA 515531 37 100.0 36 ..................................... TATATAACCAGTTTCCTCTTTTACGTAGTCAACTGA 515604 37 100.0 36 ..................................... TATACTTTGCAAGTTCACCACTTATATTTTGAATAC 515677 37 100.0 35 ..................................... TCAATTGACGCATATTGCAACGATTACAACAATAC 515749 37 100.0 37 ..................................... AAAACAAAGTCCGGCTCAATGCTTTGAATAGGCAAAA 515823 37 100.0 37 ..................................... TAGTCTATCCCGAGACTCTGTGCTGCTGCTAGTGTGT 515897 37 100.0 39 ..................................... TACGAGAACGCGTTATTTATCATTGGTGGAAGGCATAGG 515973 37 100.0 35 ..................................... TCTCTACAACATCACCTACAAGCCGCAATTCCAAC 516045 37 100.0 35 ..................................... GTAAACAGTACTCGGTTGACCTCCTGCGACTAACG 516117 37 100.0 37 ..................................... AACGTGAAGTCAAACGGTGTTGGGCGTTAATACTCCA 516191 37 100.0 36 ..................................... TTTGAACTCATTGCGATCGCTGCAATCATCTACGGA 516264 37 100.0 39 ..................................... GATTAAACAATAGTTTAGGATTGCCTTCTAAGATTTCGC 516340 37 100.0 37 ..................................... ACATATTATATGACATCCCGAATGACACAAAATTCAA 516414 37 100.0 37 ..................................... ACGCCTAGATCCTTAGCTTGTTCAGCACTTATTTTGA 516488 37 100.0 36 ..................................... TTGGAGACGTATCCTGCTATGAATTCACTGAAGGTG 516561 37 100.0 38 ..................................... TTCCCTTGATGCCGTGGGAAGATGTGGTGGAAATATAT 516636 37 100.0 35 ..................................... TCAGTTGCATCTCGCCCCTAGTGGCGAAGCGGACA 516708 37 100.0 36 ..................................... ATATTCACACCTAACAAACGGGTACTCGCTCGACGA 516781 37 100.0 37 ..................................... GTGTTAACCTGTGCGGCAAGACCAGTGTTAGTACCAG 516855 36 89.2 0 ..........C...................-.T.C.. | ========== ====== ====== ====== ===================================== ========================================== ================== 26 37 99.6 37 GTTTCTAAACTAACTTTCCCCGCAAGGGGACTGAAAC # Left flank : GCAGGCGGGGGGATCTAAATCTAGGATGATCAAACCTTTATCCGAAAAGTATTGGGTGTAGTATAGCGATTCCCAGTTAAGTGAGGTACAGGTAATATTTTGAAACGCAGAGGGTCGCAGAGTTAAGCGCAGAGGTACGCAGAAATTTGTACTTCAGCAGACTAGGAAACGCTATATATCTCCAGAACCCTTACACCCTTTCCCAAAACTTTAATTTTATTTTTCGTTCTCTTGCGTAAGTTATGAAAAACTCGACAATAGTAGATACTCATATTATGATTGGGTAATCAGCTTGATGTTTGTCAAATCAAAGCGGGGTCAAAAACCCTGGGGGATTTGCCAAAATCGCCAGAACCTTGACAATGTAATAATTACAGCATTTCATTAGGTTGGAAAGTTGAGAATTAGTCGCAATAATCGCGGCTGAAATCGACCTTTTTTTGAGGTTCGTCAAAATGCTTTCCAGGAAGCTGTCTCTGTAACAGTTTCAGCACCGAGCA # Right flank : CATTTTTAACTTTCATTACAAAGTTCTTGAATCACTCTGGAAAACTCCTGGGTCAAAAAGTCGGAACCATTTGCACTATAAACTTGCTGTAACTGCTGGTAAAACCATAAACTGCCTTCTTTGCCAGTTTTGAACTGTTGCCAAATACTATTGCCATGTTGCCGCAAGTCTGCTAGCAAAGACCTGGCATTGTGGAGCTTATCTGCTAAAGATACCCGCCGGACTGAGGGTGAAGCATGACGCAGGTTTTCTAAATACTTTTGCTTGCGTTCTTGCCAAGGTGGTTTCGGGTATATGTCAGATTCTGTGCAGCCATCAACTATTGCAACGACTGTCTCACCGAAACGCTGGCGTATTTCTTCACGGGTAGATTTGCCGCCTTGGTCTTCTATGGCATCATGTAGTAAGGCTGCGATCGCTTCTTCTTCGGTTCCACCTGCTTCTAGTACAAGTGCAGCTACACTCAGCAAGTGAGCGATGTAAGGAACGCCGCTAATTTT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAAACTAACTTTCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 574583-573740 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRU010000001.1 Nostoc sp. FACHB-110 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 574582 37 100.0 39 ..................................... TTCCAGGGAAATTCTTATTTAAAACACGCTGACAAAAAG 574506 37 100.0 35 ..................................... ACAGAAATCAGGAGCCAAAGAAGCTTGGAACAAGC 574434 37 100.0 32 ..................................... TATTCTTTAAATAACAGAAATTCAACACTTAG 574365 37 100.0 34 ..................................... AGTTGAACATCGACCATCTCAGCTAACGCGCCAT 574294 37 100.0 36 ..................................... TCTTTGTTATTTGATTGGGGGGAGAGTCAAAGTTTA 574221 37 100.0 36 ..................................... ACAACTGCGAAGCATCATTATTAATTCCCCGCACCC 574148 37 100.0 38 ..................................... AGGCGATCGCCTGGGGATTGCACCCAGGATTCGGCTGA 574073 37 100.0 35 ..................................... TATTGGTCAACATCATCATCAATATGATGCTCAAC 574001 37 100.0 37 ..................................... ATATTTATGGCAATGATATGGGATGTCAGATTAATAG 573927 37 100.0 37 ..................................... AAGTCTCAATGAAATTTGACCGCACTACTGGTGTTGG 573853 37 91.9 40 .....C....A.....................A.... AACAAATTGATAACTGGTCACTGTTCACTGTTCACTGTTC 573776 36 75.7 0 A.....C.....T....T...-..T....GA.....T | T [573751] ========== ====== ====== ====== ===================================== ======================================== ================== 12 37 97.3 36 GTTTCTAAACCCAATTTCCCCGCAAGGGGACTGAAAC # Left flank : TAATTATCTACGATCTGCCAGATAATAAAGCCGCTAACAAACGTCGCACTCGTCTGCACAAAATGTTATCTGGTTACGGCAAATGGACACAATACAGTGTATTTGAATGCTTTCTGACATCTGTACAATTTGCCACTTTACAGACAAAGATCGAAAAATTAATCAAACCCGAAGAAGACGCTGTGCGAATATATGTACTTGATTCTGGTGCTGTGAAAAAAACTATTACCTATGGTTCGGAAATACCTCGACAAGAACAAACTATCGTCTTATGATTGATAAAGATATCAGCTTGATGTTTGACCAGTCGTAGCGGGGTCAAAAACCCTAGGGGATTCGTCAAAATCGCCAGAACCTTGACAATATAATAATTTCAGAGTTTCATTAATTAGGGAAGTTGCAAATTTCTTGCAATAAGATGGGCTGAAAATGACCAAAATTTTCGATTCGTCAATTTGCTTCCCAGGAAGCTTGCTCCATAATAGTTTCAGTAGCGAGCA # Right flank : CACCTAGAATATTGAATCATTCTTCGACTCAAGCCAAACGATGCCTAGAGCAGCCACAACCACCAAGCGCAAGCCCAGAGCTAAACCTGCACCTACTTCCTCAGTGCCGACATGGACAGATGAGACCCAATTGGTAGGCTTGGTGTTTGATTTAGAAGCAACTGCTTCAGCATCGCTCTACTCACAGTACACAATTGGACTCCATGCTTGGTTTCTAGACCAAGTGCGACAAATTGACCCTGAACTATCAGCTTATCTTCATGATGGAGAATCAGAAAAAGCTTTTACTATCTCAGCACTAGAAGGGCAACTTCTACCTAGTGGTAAGCAACTGAAATTAGTAGCCAATCAAATCTATCATTGGCATATCAATGCGCTGTCTCAAAGGGTTGCATCTTTTCTCAAGCAGTGGTTAACCAACTTGCCAAAGGATATCGATTTAAGAGGAGCATCTCTACAAATCAAACAGGTGAGTATTGCTCATACCCCTACTACTTATA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAAACCCAATTTCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 603896-603042 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRU010000001.1 Nostoc sp. FACHB-110 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 603895 37 100.0 39 ..................................... GTTGAGTTGATTTAACCCTACTATCAATAGGAATATCAG 603819 37 100.0 41 ..................................... ATGAAGGTCTTAAAGTCATCATGGGACTTAACATCACGGAA 603741 37 100.0 35 ..................................... CCTCAATGTCAAATACGCTATTGAGGATTTTATAA 603669 37 100.0 40 ..................................... CCTTCCGCGGGCAAGTCTCCAGAAGTGACAACACTCGCAA 603592 37 100.0 34 ..................................... GTCAATTGGATAGACTCACTAGGCAAAGAGTTAG 603521 37 100.0 36 ..................................... AAGTAGAAATCCAGGTAACACGGCTCAGATGACGTT 603448 37 100.0 36 ..................................... TACCCCAAGATATTCTTGATGGTATGCGTTTAGGGT 603375 37 100.0 38 ..................................... GGATTTTTAGTAGCTTCAAATACTCTGAATAAACTCAA 603300 37 97.3 36 .......C............................. CACATTTTATTAGAACTAAGGGAAACTCAGGATTAA 603227 37 97.3 38 .......C............................. AACGGCAGCAATTTTATGAATGGGCAAGCTCACAAAAT 603152 37 97.3 37 .......C............................. ATAGAGAGAATGTATTCCTCGCACATATAATCTTGAA 603078 37 97.3 0 .......C............................. | ========== ====== ====== ====== ===================================== ========================================= ================== 12 37 99.1 37 GTTTCCATAACCTTTTACCCCGCAAGGGGACTGAAAC # Left flank : TTTAATTCCGCAAACATAACCGTATTTAAAACTGTAGAGCAAGGCGTTGCTGATTAATGGGATGATTTATGTTTCGCGCATTCGCCGCCAGGCGTTCCGCTTGCGGTAGGCGCAAAAGCGCAAAAAAGCGGTAGTTTACTTTGTTAAAAAAGCTTAATTTATCCCGCGTTTATGCAAAGCCTAGAGCAAAAGCTGTTGGGTTTGATTGAGCGAGAGTACGGTGTTAAAGATTGACTCGAACTATAAAAAACTCGACAATCAAGGATACTCATCTTATGATTGAGTTATTAACTTGATGTTTGACAAACTGAAGCGGGGTCAAAAACCCTAGGAGGTTTGCCAAAATCGCCAGAACCTTGACAACATAATAAGTACAGCTTGTCTCTATTTCGAGAAGATGAGAATTAGTCGCAATAATCGCGGCTGAAATCGACCTATTTTTGAGGTTCGTCAAATCGCTTCTCAGGAAGCTTGCCCTGATTAAGTTTCAGCACCGGGCT # Right flank : AATTTGATGAATACCCAATTTAAATGCTGAACGGCTTTTTTATCAACAACTAAAAGCGAGTTTCATAGTTCAACAATAATAGACTGTCATTATTTAAATCAGTCGAACCACGCAAGAGAATTTCGTCATTGAGGCGATAAAGCAAATTGTAGTTGAACGAATCATTAGTAGAAAAAGCCCGTGATAGAGAGACAGATAAGTTACGGTTGACGTTAAATACACCCTCTGCTGACAAATTGAGAACTGAAGAATTTCTGGAAGCGTCACTAGTTGCAGGTGTAGGATATATGCGAAATTCATTAAAGCCAATAGCTTGACCGATCGCCGTAATAGTGCCTTGCAAACCACCTAAAATAGTAGAACTGGCGAAATTCGTGAGTCCTTGGGTTGCATCTCCTGTTTGCGCGAAATTATTCAAAATTGAACCACCCAATAAAGCGACAATTTCGCCTCGACTACGCGCAGGTTCACTTGTTAGTTCTAAATTATTTCCTAATTCA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATAACCTTTTACCCCGCAAGGGGACTGAAAC # Alternate repeat : GTTTCCACAACCTTTTACCCCGCAAGGGGACTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 27236-28097 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRU010000017.1 Nostoc sp. FACHB-110 contig17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 27236 37 100.0 37 ..................................... GGATTCAGGAAATTGTTCCCAAGCATGGCGATCGCTA 27310 37 100.0 40 ..................................... ATGGGCGCGTTGGCAAATTTAATTAACGCTTACTTATCGG 27387 37 100.0 35 ..................................... CTGATGGTCGCTGGGAGTGTAGAATCTGTACTTGG 27459 37 100.0 41 ..................................... TTGAGTTGATGACAATAGGCGATACGCCCAAAGCATCAGAG 27537 37 100.0 36 ..................................... ATTAGAACCTTGTACACTGTAGTTCCCTGAATTAGA 27610 37 100.0 45 ..................................... CATCAGTAGCCAGTGTTACAGGTAGAGAATTCGCTGCGGTACTTG 27692 37 100.0 38 ..................................... TTAAGTTCTCCCCTATCAGTCCATTTGACAATCGGTGG 27767 37 100.0 34 ..................................... GTCAATTCTGTTCCCGAAGAAACCGCCGCACTTC 27838 37 100.0 35 ..................................... GCTTTTTGTGGGTGGGGGGTACTTCTTGGTTAGAC 27910 37 100.0 40 ..................................... TTGAGAAAAACCCAAAATAACGTTTTCCAGATACCGTGAA 27987 37 100.0 36 ..................................... GCGTTACATTGCCAAGCGATCGCACCGGGTTGTTAG 28060 37 91.9 0 ...............G................C...A | T [28090] ========== ====== ====== ====== ===================================== ============================================= ================== 12 37 99.3 38 GTGGCAACAACCCTCCAGGTACTGGGTGGGTTGAAAG # Left flank : AAAGAATTAGCCCTCTGTGCTTATAATCTTCGCCTAACTAAGCGAAGTTGACAAATATCTGAACCTTGATAATGGAATAATATTGAATAGCGCCGCAGTTCATGCTGCTTGCAGCCTCTGAACTGTGTTAAATGAGGGTTAGTTTGACTGTAGCAATACAGTCTTGCTTTCTGACCCTGGTAGCTGCTCACCCTGATGCTGCTATCTTCGGATAGGATAGGTGCGCTCCCAGCAATAAGGGCGCGGATGTACTGCTGTAGTGGCTACCCAATCACCCCCGATCAAGGGGGAACCCTCCCCAATTTTTTATTTGAAGGGCTTAAATCAAGGCAAAATTTCCAATTGTTTCGCGCAAGTTCCAAATACCTTATCTACTCTTGATTTCATCGTTTTTTCACTAAGACATAATTCTTGAGGCTAAGGCTCAAATGAGAAATTGGGAAACATTCGCGCTGAAGACATCTGGAAAAACGGCTCCACAATATTTTGTCACTGGGTGG # Right flank : ATCTTTTAAACCGAGATTAGTTTTGGGTTTCAGTAACTATTAAATTTAGGGGTGGGTTGAAAGCAAGTCCTTTCATCCGCTTGTTTTAATTGCTTTGTATAATAATTGCAGAGCGTATTATATTATTGATGACATTTAATTTGTCATCAATTAATTAAGAAACACTAATGGCTCACGACGACAATTAAGTAGTCACAATGACATTAATCTGTCACCTATGACAAACAATGTCTCACTGTACATAACTAGTCACTCTCACTTAGTTTTTATTTTTTTACTGACAGTGCGGATGAAAGGACTTGAACCTTCACTCCTCTCGGAACTAGAACCTAAATCTAGCGCGTCTGCCAATTCCGCCACATCCGCATCAGCTAACTATACTAGCATAACATATTTGGAAAGGGAATAGGGAATAGCTAGAAAAATTGGCTGTATAGTCGATAATCACGCCTCTCAATTTACACTACTCACAGTATAGATAAAGACGAATCATCGCCTAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAACAACCCTCCAGGTACTGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.70,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 131164-130747 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRU010000016.1 Nostoc sp. FACHB-110 contig16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ========================================== ================== 131163 39 100.0 36 ....................................... TAACCCTGAAAACTATCTAAATTTTCCAGGGTTTGA 131088 39 100.0 37 ....................................... CAAAATTCAGTAGGAATCACGATGGAATGGCATAAGA 131012 39 100.0 42 ....................................... TCAATTTTACATCTGGGGAACGTCTGATGCTAACTCTGTCAG 130931 39 100.0 33 ....................................... AGTCAGCGTACTCCGCATAAATATTAAACCCCC 130859 39 100.0 36 ....................................... GGTGGCAATATTTGCAAGCCACGGGGCAAGCCGGTT 130784 38 82.1 0 .....C.....T.....-.........T...G.....TG | ========== ====== ====== ====== ======================================= ========================================== ================== 6 39 97.0 37 GTTTCAACACCCCTCCCCAGCTAGAGGCGGGTTGAAAGA # Left flank : AACCTGATTGACAAAAAACAGAACCTTGATAATAAAATAAAATTTAGTAATAGCGCCACAGTACCGTGGCTTTTTAACAAGCCACTGTCGGTCATTCATGCTTTTTAAAAGAAAGAGACTGTACTGTGAAAATGTGGGTTAGGTTGACTGTACGCAGTCCTGCTTTCTGGCCCTGGTAGCTGCCCACCTTGAAGCTGCTGTCCCTTGAGGGCAGGAATAAGGTGCGCCCCCAGTAATAGAGGTGCGGGTTTACCGCAGTGGTGGCTACTGAATCACCTCCGAGCAAGGAGGAACCCACCTTAATTATTTTTTGGCGAATCGAAGCGAGGTCAATTTTTCTGGGGGTTCTGCCAAAAGTTTAAATCGCTTATGTAATGAGGTTCATAACCCTTAGTGTGTCAGTTAATTTACTTTTTTAAGTGTTAACAGACAGGCGATTTTGGGAGACTTGCCAAAAATGCTTTCAGAACTGTTGGCAAATCAAGGGTTTGAAGCGCAGA # Right flank : CATAAAGTAAGTTGGCTCTCTCAAGCTCAACTGTGTTTCAATTTTTAGGTGGGTTGAAAGGATAGAGCAACAGATTCTTTGTTTGAAGAGCTTGATTTTAACTCTAATATAAAAACTGATTAGTTACCCTATAAGATAATAGTCTTGCCATACTTTATATATGGCAGGATGCTGCTATGACACACAATTTGTCAACGCGGACATTAATTTGGCAATCCGGACACCAATTTGTCAACGCAGACAAATAATTTGGAAATTGACATTAACGAGCGCGGAGGGATTTGAACCCCCGACCCACAGAACCGGAATCTGTTGCTCTATCCACTGAGCCACGCGCCCTTAGTCTTTTGCATTATAACATGGCTGGCTGGGATTGGTAGTAAATTTGAGTGGCGACATTAAAGAAAATCAGCAGGATTAACAGGTGTACCACGGCGGCGCACTTCAAAATGCAGGTGTGGCCCTGTAGATAACCCTGTAGAACCCACTGCTGCGATCGC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACCCCTCCCCAGCTAGAGGCGGGTTGAAAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.90,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 15505-18735 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRU010000021.1 Nostoc sp. FACHB-110 contig21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 15505 37 100.0 36 ..................................... AAGACGAAGAAGAAACAATAGTTTTTAAAGCTGGTA 15578 37 100.0 42 ..................................... ATCTTATGCTAGATACTTTACTAGCTTTACAGGCTGATCTTA 15657 37 100.0 46 ..................................... ATCGCTAGACTTCCGAAGTCTGGCATCACGCGTTGAGCGATCGCCG 15740 37 100.0 39 ..................................... CAGAGACTAGAGGTTGACGAAAGGATAAGACCTCATTAG 15816 37 100.0 36 ..................................... CACTGCAACTTTAGGGTCGGAGTACATACAGCCATT 15889 37 100.0 46 ..................................... TCATTAGCGACACGGATGTCGTACCATGCTGGAAACCAGTGGTGAG 15972 37 100.0 34 ..................................... AAAAATCTGAAGCACCACAAGTAAACGCTTCTAC 16043 37 100.0 34 ..................................... ATGACAACATCCTTGTCCATCGTTACTGAGTCAA 16114 37 100.0 38 ..................................... TTGATAAATACCCGTGGTAAGCGCAACCCAATCTACAA 16189 37 100.0 35 ..................................... CGACATACGTGTCGCTAACGACACGAGCGGCGTGG 16261 37 100.0 37 ..................................... GATTGATTGTTCCTTGACGCGGACAATGCGGTTTTGG 16335 37 100.0 39 ..................................... TCCTCTGGATCTACTTTGAGGAACAGGGCGCGACTCCAA 16411 37 100.0 39 ..................................... TCACCTTTAGCTTCATCTCTAATTTCTATGCGATCGCTG 16487 37 100.0 36 ..................................... TAGCCGTGATGTCAGCCACTGGCAGAAAGGCTAAAG 16560 37 100.0 36 ..................................... GCCGTATGGGTCTTTGCGTACAACACCTGCATTTGC 16633 37 100.0 38 ..................................... TTCTATGGCAAGAAATAGGAATGAGGACAGCGAAGCGT 16708 37 100.0 38 ..................................... CGCTTCTCTGGAGTGCTTTTTACAGCTTTCCTCGTGCG 16783 37 100.0 36 ..................................... GTCAAGCAAGCCTTAGGCCACATGACCGCATATTGG 16856 37 100.0 38 ..................................... ATCAAAAAATCCAGGGCTGCGTACTTGGTCAGCTTGAG 16931 37 100.0 34 ..................................... GTGAGACGATCAGGGAAGAACTTACTTGAGTAAG 17002 37 100.0 39 ..................................... ACTGATAAAGCGTTGCTGGAATTCATCATCATCGGAAAG 17078 37 100.0 33 ..................................... TTCAGTGGACTGCCAGCGATATAACCGCTTTGA 17148 37 100.0 40 ..................................... ACTGAGGACTGCGATCGCTGGAACCCCGCCCACTTTGGCG 17225 37 100.0 38 ..................................... GCGATATCCTAAGCCATCTAATACCGTATTCCATACAC 17300 37 100.0 39 ..................................... ATGTTGGGCAACACTATAACCAAACTCTGACTTACCACT 17376 37 100.0 36 ..................................... GCTTTAAATATCCACTCTTGATAAATAAAGCTATCT 17449 37 100.0 39 ..................................... AACCATTATAGCCAGTTGCTAATACTTGATTATCCTTGA 17525 37 100.0 39 ..................................... TCTGTTGGTGGGGGAGGCGCGGGTAGAACCACCAATTCA 17601 37 100.0 35 ..................................... CCAATCTTTAGATGTCGAAGTCTCCCGACTTCCGA 17673 37 100.0 41 ..................................... TATGTGTAGCGATCGCTCTGATCCTGCTTGGATTTGTCGGC 17751 37 100.0 36 ..................................... TTCTAGCTCGGCGTTAAGTTTGTCTTGAACTTGCTT 17824 37 100.0 38 ..................................... CGTTTTAGACATGCTTATGTTGAAGTCCCAGGTCTTGA 17899 37 100.0 33 ..................................... CTTGATGGACTAGGATACCGTCACAGAGTACCC 17969 37 100.0 34 ..................................... TTATTTGTTCCTGGTTACGCCGTAAATGTTGAAA 18040 37 100.0 35 ..................................... AATCAGCGTCAGTGAGGATTGGAACACCGAATAAG 18112 37 100.0 35 ..................................... GCGACAGTTGGCGATCGCCATTGCGTTGTCCTCAA 18184 37 100.0 38 ..................................... CACCCAAATACGCGAGGAATTCGATAACTGTCCATTCA 18259 37 100.0 40 ..................................... ATAATCCTAACTATTTCTTTGCTTATGCGGGAATTGTTAA 18336 37 100.0 30 ..................................... TTATTTATCTGGCTCTCTTGAGCTTGTTAG 18403 37 100.0 38 ..................................... ACGACGACCTGACACCTAGTGCAGCTTACGAGAACAAC 18478 37 97.3 36 ............................T........ CCTCAGCAGCAGTTTTGTCAAACGAACCCTTGCTAC 18551 37 100.0 36 ..................................... GTCAAAAATGCTTCCAGGAATTTATACCTATAAAAA 18624 37 100.0 38 ..................................... TTCTTGACTAATGCAAACCCAGCTAAGACTTGACTTAA 18699 37 94.6 0 .............................G......T | ========== ====== ====== ====== ===================================== ============================================== ================== 44 37 99.8 37 GTTTCCAAACCCAATTTCCCCGCAAGGGGACTGAAAC # Left flank : CAATTATGGTGTAGGTTGGGTGGAGGAACGAAACCCAACATCCGAGCATACTTTGTTGGGTTTCGCTATCGCTCCACCCAACCTACTTTTCTGCTTAACTGAACTGTATTGACTTATAACAAGCCGCTCGTGCTGTGTTGAAATACCTGGAAGACTTGAACAGAAAGTATTTAACTGCGGTAGAAAAAAAGCCATTGAGTGTGATAGAACAAAAAACTGGGATTAAAGATTGACGTAACCCACGAAAAAACTCGACAATAATAAATACTGATCTTATAATTGTGCAATCAGCTTGATGATTGTCAAATCGAAGCGGGGTCAAAAACCCTGGGGGATTTGCCAAAATCGCCAGAACCTTGACAATGTAATAAATACAGCGTTTTCATTATTGGGAAAGTTGAGAAAATCTCTCAATTAGAGTGGCTGAAATCGACCTATTTTTGAGATTCGTCAAATCGCTTCCCAGGAAGCTTGCTCTAGTTAAGTTTCAGCACCGAGCA # Right flank : TTCGACTGTTGAAATGTCGCTGGCGATCGCAGTCTTAGCAGTTTCGACAAACTATAATAGACGAAAAGCTATGCAGACTTTTCACGCCATTACGAATCGCACTTCCATCTAAAGTGAAAAGTCAAAAACTTAACTAAGGCTTAAACTTGAGTTCAGAACCTTTAAAGGTTGTTACCTGTGCATACATCAACCCCTGACTGGTTTCATAAGCATCAGAACCACGATAGGGTTCTTTAAGGAAAGGAGCTTCGGCGCGCCACTGAACGTTAATTGTTTGATCTATTTGACTGACATACTCAGCAGTAAAGGTAAGACCGCATAAACCGCCTTGCTCATAAGGTTTGACAAAATCGGTAAATAGGTTTCTGATTTGCGTTCGTCCTTTAACAACAACACCATCAGGTAAATGAATCTCAGCTTTGTTGGGATACTGCGCCATCAATCGTTCTAATTGACAGCTATTTAAGGCCTTAATGTGTTCCTCAACTACCTTAATCGGT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAAACCCAATTTCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 266205-267233 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRU010000003.1 Nostoc sp. FACHB-110 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 266205 36 100.0 36 .................................... CTTGGTACATAATCGTGGCGAATCTCGCGACGACTT 266277 36 100.0 36 .................................... GGTAGCTTAGGACAGCCCAGCAAACAATCGCAGCTA 266349 36 100.0 34 .................................... TTCGGGTGCAGGAGCTTGCTTGTTCACCCCACGC 266419 36 100.0 33 .................................... GAGGGGGTGAGTGGAAAACCGCTTGCGCGATTT 266488 36 100.0 39 .................................... ATTACTACGTTTAACACAACTATTACAAACATAATGAAA 266563 36 100.0 35 .................................... CTTGCATTAAAAATGCTTGGGGTGGGCTGGTTTTT 266634 36 100.0 37 .................................... AAGCGGTGGAAGTTTCCACCTTTTGACTTTGTCCAAT 266707 36 100.0 36 .................................... TTCACTACAAATCAACCACGCGACAATTATCGCCTC 266779 36 100.0 35 .................................... ATTTTTCCGGCAACGTTTAAAACGTTTCCGGTAGG 266850 36 100.0 34 .................................... GATTACTGTCAGTGAGTAGGCAAAAAATGCCCAA 266920 36 100.0 31 .................................... TTTTAATCTCACTGACGGCGGTTATGTTTAA 266987 36 100.0 32 .................................... TTCCGTGTGCGTTATCAAGATTTTTGCGAGTA 267055 36 100.0 33 .................................... ACGGCGGTTACCACGAAAAGTTTTCCTTGAGGC 267124 36 100.0 38 .................................... AAAGTTATTTTCGTAGGAAATCTTGAGATCTTGTTCTA 267198 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 15 36 100.0 35 CCCTACCGATTGGGTTAAATCGGAATAGTTGGAAAC # Left flank : GCCACAACAGTGAGTAGAAGTGTTTCCCATAATTCCAATTTGAGTTAATCGGTAAACTGTTTTGAGTTGGTTAAAACACAGTTGGAACTTCGACTGCTATATAACAGTATTATTTTTATTCAAAATTAAATCAAGCGATCGCTTATCCTCTTTCATTTGGATTTTAACCACACTGAGGCAAAATTAGTTTATTACAGATCAAAATAGCGATCATCATCCTGAGCAGATTTTGTAAAGATTACTGTGGAAAATGTCTAAATTGAGTCAAAGTATTGCACCATATACACTTGAACAAATCAGCAGGCATTTTCACAAGTTCATCGACACCACTCCCAGAATCGCCAAAACCCTTATTTTTCGTTGAGTGGTGTCGATTGCTTACAGGGTAAGGGTTTGAGATATGTATTTTGGTCTGTTTTTATCTAAGAAAGTGATGGTAGAATTAGTGGTGTCGATTTGGCGGCTAAAATCCTTACTGGGTAAAGGCTCCTAGACGAACT # Right flank : CACTTGTAAAAAAATTAAACACTGTCCGACCTAACTTTTTAAAAGGTTTGACAGTGTTTATTACTAAGAAATACGAAAGAATAATTAAGAAGCAAGCTTTAAATTTACATAGCGATTCAAGCTAATTTTTTCCTCAGCAGCTTCAATAGCAAGCTTACGATGAAGTTCTGGCGGAATACGAACTTGAAATTTGCCGCTATAGTCTTTTTCTGCAATAGGTTCGGGAATAGACTCGCCGTTAGCTTCCATATCAGCTACTACTGCTTTAACTAAAGATTCAATACCTTGAAATGCAGCTATTTTATCCTCATCAAGATAAGATAAGCTAGGAAATTCGGCACACAAACCCACGTATTCTTGATCTTCAGCCGACCAAGTAACTTTATAAGTGTAGTGGTCATAGTTCTTCATTTTCTATGTCCTCAATCTTATTAGCCGCTTCCAATTTGCTTATCGCTTCCAAAACTTGTCTGACTTGGTAAACCTTAGCTTTTCCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGAATAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 279237-278212 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRU010000003.1 Nostoc sp. FACHB-110 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 279236 36 100.0 34 .................................... GATAGACAAGCTCCTGATTCAATTTTGCAAACTG 279166 36 100.0 30 .................................... CACAACCCACAACTTCCTTAATTTTTTTAA 279100 36 100.0 37 .................................... TTTGACAACCCTTCAAGATTATTGTTATTCAATTGAA 279027 36 100.0 37 .................................... AAGCATTTTGTCTTTTGGACAAACGCTTTTTAGTTTT 278954 36 100.0 39 .................................... CCGTATGGTAAACAAGAGAATATTCCTTCAAAAACAGGA 278879 36 100.0 34 .................................... AGTTCTTGCTCTTCAACGTTGCTCTCCTCAACTA 278809 36 100.0 35 .................................... ACGACGTAATCGCCGTGCTGGCTGCAACCGACAGA 278738 36 100.0 32 .................................... ACTGTATTATCGTAATACAGATTAAAAATGAT 278670 36 100.0 34 .................................... TGTATCAAAGTCAATTGTCACTTTCATGTGGTAT 278600 36 100.0 35 .................................... GAGATATCTTCTCCCGGAACATGTTCCTGGAGTTG 278529 36 86.1 36 A.............TC..........TA........ GGTATATTGATCTAGCTAACAGACTTACTTCCCTAT 278457 36 88.9 32 ..............TC..........TA........ CGGAGACGAGCAACTTTTTCCTCGTAGCTTAA 278389 36 88.9 34 ..............TC..........TA........ TTCAGTCCGCTAAGGGCATTAAGAGCTACGATAC 278319 36 97.2 36 ..............T..................... GATTTAGTCTCAAAGTCTCTGTAAAAGTCAACCAAA 278247 36 86.1 0 .......................T.GG...T.C... | ========== ====== ====== ====== ==================================== ======================================= ================== 15 36 96.5 35 CCCTACCGATTGGGCTAAATCGGAATAGTTGGAAAC # Left flank : CGACCCTTTAGAGTTTTATCACTTTGTGCGAAAAATTTATAAAAGCCTGCCCTCTGGATGGACAATAGAAGATGCGATCGCAGATTTTACAGGGATGACAGCCCAAGCGAGTGTCGGTATGGTACTTGCTTCGTTGTCGGTACAAAGTCCATTACAATACACCCCAGCCGAATTACAAGATGGACAAGTAACAGGACGTTCTTTTAACCCAATTGAAATTACTCTCAAGCAGCAGTTCCGCAAATAGATTAGCTAAATTTTTGTATAATTACTGTTATATCTAGGTTTGAGGCGTTTTCACAGAGTTTTTTATTGTTCATCGACACACCTCGCCAAATCGCCGAAACCCTATATTTTTCGTTGAGGTGCGTCGATTGCTTACAGGGCAAGGGTTTGAGGTATGTGTTTTGGTCGATTTTCACTGATGATTTATAATGATTTTAGAGATGCGTCGATTTGGCGGCTGAAACCCTTACAGGGTAAAGCCTCCTAGACGAACT # Right flank : TCAAAACTAGAAGCTTAAATTTTCTAGTTTTGATAACTAAAAAAGACTCGTACTATGGTAAAGATTTTAGCTGAGGTATTAATTCATTTGACGAAGTGTTAATTCAGCAGAAATCTATATACTAAATTTACGAAAAATTATTTTGTTTTTCTTTATTCACATCTTGCATCAAGCGACTGAAGTCGCAGCTACACAGACAAAACCTGCCTATCGCGCTTGCGCTGCGCTTGACGCACCACGCAGGTTCCCAATCCTTGATTTTAGTTAGTCCGCGTAGGCGGACTTCGTTTGTATAGCCGCGAATTCCATTCGCTAGGGCTAGGTGCAAGATATGTGTTTACATAAATTTCATTGAATTAAAAAGCTGATACTGAAAGCAGGAATGATTTGGTGTTTTAATTGTTCAATTTTAATACCGTCTCATCCTGCTATTCAGTATTTGTTGGTTAAACGTCTAACAGGTACGCCTGATTACTGCGTTTAGTTTTCAACTATTCCGA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGCTAAATCGGAATAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 291458-290925 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRU010000003.1 Nostoc sp. FACHB-110 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 291457 36 100.0 37 .................................... TTCGCATTCAAAATTTCCGCAACATTACTTGCATCAG 291384 36 100.0 35 .................................... ACCATAATGGTACTCAAGTACCAATTGGTTCTTCA 291313 36 100.0 32 .................................... GTTGGCCATTCACCTGGAATGCACCAACTTGA 291245 36 100.0 37 .................................... CACAGTGCCACATTTAGAGGAAATAAAGTGGATAGAA 291172 36 100.0 38 .................................... CATTCGGTTCGGTTCTTTGACCGAGAAATGTCTGTCAT 291098 36 100.0 31 .................................... CTTTTCTTAATTCTTCGCTAACGGTCTTTAA 291031 36 100.0 35 .................................... CTCCTATGAAACTGAAGCAGAAGGATGGTAGTGAA 290960 36 91.7 0 ..............................AT...T | ========== ====== ====== ====== ==================================== ====================================== ================== 8 36 99.0 35 CCCTACCGATTGGGTTAAATCGGAATAGTTGGAAAC # Left flank : GTTTAATGTTAGTCGTTGTTGTGTACGATATTCCTGATGATAAAAGACGCACAAAATTATCTAATTTTTTGGAGGGGTACGGACAAAGAATACAACTTTCTGTATTTGAATGTTTTTTAAGTTTAGAGGAGATGCGCCAACTATTCCATAAGGTAAAGGAGCAGGTGAAGGAATCGGAGGACAATGTGCGGTTCTATTGGATTTCTCAAGAAGCGGTTTCCAGGGTGTTAACTATTGGCTCTGAGAATCCCAAACCACCGCCGAAGTATTATGTTATCTAAGTTTTGGAGATTTTGATGGTGATAAATTACAAGTTCATCGACACACCTCGACAAATCGCTGAAACCCTATATTTTTCGTTGAGGTGTGTCGATTGCTTACAGGGTAAGGATTTGAGCTATGTATAATTCAGTGTTTTTATCCAAAATATATAGTGGTATATTAAGGTGTGTCGATTTGGCGGCTGAAACCCTTACTGGGTAAAGGCTCCTAGACGAACT # Right flank : AAAAAAGGCGTTGCTGATTAGAGGGATGTTTTTTGTTTCGCGCCTTTGCGCCTTTGCGCGAAACATCGATAGTTAACCTTGCTAAAAATGCTTAATTCATCCCGCATTTATGCAACGCCATAAAAAAATAACCCTCCTAACAATAGGAGGGTTTTTATTTAACGAATAACATCACTACAAATTAAGCCACATCAAACTTTTTATATTTAGCAATTTTGTAGTAAATATCATCTAAATAAATCACCACATCAGCTATTTGAGCAAGCTTATCGCTTAACATTTTTTTCTTAGCAACCACAGTGACTTTGACATTGCGACACTGTAAATCTGTAACTGCTGGAATAAAATCGCCATCACCACTTACAAGAATCACCTCATCTCCATTTTTAACTTCTCTCATCATGTCAACCACAATTTTGACATCATCACCAACGGTTTTAAAAGTTTGCTGTTCAGGTCTAGCTAAAATTGGCAGTTCAATCACCTCATAACGCAGATGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGAATAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 25076-25965 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRU010000046.1 Nostoc sp. FACHB-110 contig46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 25076 36 100.0 39 .................................... CATGAGATGTAAAATAATAAAGAAAATTATTCCGAGACA 25151 36 100.0 30 .................................... CTTTCCCGATATTTACGGCAGAAACGTAGA 25217 36 100.0 33 .................................... CATTCTGAAGCTTGCTTTTCAGCAGCAGATTGC 25286 36 100.0 35 .................................... CTCAAAACAAAAGAAATGGTCTTCATAAACTGGTG 25357 36 100.0 37 .................................... GCTTTACCTTTGAGGTACGCTGCATAGTGAGATTCTG 25430 36 100.0 37 .................................... TCAAAACCATTTTCATTTTTGATTACTAATGCGTAAG 25503 36 100.0 36 .................................... AAACATTCTCAATTTTTAGTACGTACGCATCCCCTG 25575 36 100.0 39 .................................... CATCCTTCTTAATGGTTTGGATGGAGTCTAAAAACATAA 25650 36 100.0 38 .................................... CTGAAAGTTGCTGGAGAAATCAGCCATACCAGTATTCC 25724 36 97.2 32 .................T.................. ACTTTGTCGGAGAGCCTTTAGTACCTCTGATA 25792 36 100.0 32 .................................... ACTTTGTCGGAGAGCCTTTAGTACCTCTGATA 25860 36 100.0 34 .................................... GTTAAATTGCACCTCATACCAAACTTTTTCTTGA 25930 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 13 36 99.8 35 GTATCCAAACCACTTACCCCGCAAGGGGATGGAAAC # Left flank : CCAATCGCTTCTGGATCTAATAAAATTCCCCCCAAAATCGCTTCTTCTGCTTCAATATTTTGGGGTGGTAGGCGTTGCCCGGAGGGGTTGCCGTAGGCATCGCTACCATCGCCTTGAAAATTTAATTCTTCCGCCATATATAATTTTGGATGAGTATTTTAGGATATCACTTAAATTAACCTTAGCTAAAACATAGCTAATTGCCTTGATAGGCTGCGTAGCAGCTTATCAGCCCGCCTACATTACAAATTGCAAATAAGACTTGATAAATAATCGACACAGATGTAACGTACAAAACTGTATCAACTTTTCGACACCACTCCTCCGAACCTTGAAAACCGCATAATTTCGTTGACTGGTGTCGATACCTTAGCCAGACTGACTTTCGCTCATTTTGAGTGCTAAGTTATTGAGAATCAACGACACCGTATTGAGAATTTAAAAAGCGGTGTCGATTTGCAGGCTAGAACCCTTTCCCTGCAAGCTCCCCTGAGCGAAGA # Right flank : CATAATCTTAGATTTGAGTAGATAGGCAGTACGATCGCCTGATATTGTAGGTTGGGTGGAACGAAGTGGAACCCAACAAATGCCACGAAAAAAACCGCAAAATTTTCAACTACCAAAATATCTCAATTCAAACAGTAAAATTCACGCTGCAATTATTTTACCTGTCGCAATATTCTCTCAAAATATGATGATTTGGTGTTGGGTTACGGCGCGATATATATTTAGTGTGTCTCTACAAATACTGTTGTGCGCCTGCACCCAACCTACAATAACTCAGTACGATCGCCTGATATTGTAGGTTGGGTGGAACGAAGTGGAACCCAACAAATGCTATGAAGAAAACCGCAAAATTTTCAACTACCAAAATATTTCAATTCCCACGGTAAAATTCACGCTGCAATTATTTTACCTGTCGCAATATTCTCTCAAAAAATGATGATTTGGTGTTGGGTTACGGCGCGATATATATTTAATGTGTTGTTTTCAATATCTCTCGTGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCCAAACCACTTACCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 497-1189 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRU010000050.1 Nostoc sp. FACHB-110 contig50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 497 36 100.0 38 .................................... CGCTTTATTTTAAAAAGTAATTCGCTAACCGCGAATAA 571 36 100.0 33 .................................... TGGTTGTTCTGGTTTTCAATATGGTTTCACGTT 640 36 100.0 32 .................................... TCTCCTCGCTCACCGATGTCCGGGCCCTCGGC 708 36 100.0 40 .................................... GAGAAGGAACATAAGAAACCTTAACTCCTAAAGAAGTTAA 784 36 100.0 35 .................................... TAAGTAGCCCTCTAGCTGCCAAAGCTGGTTTTCAG 855 36 100.0 48 .................................... TTGCTGATGCTGTGGACAATTTCTGCAACACCATTTCTAGGGTTTGCA 939 36 100.0 35 .................................... TATGCTATCTAATATCGATTGATGCTTGTTAGCGA 1010 36 100.0 34 .................................... ATAGTATAAGAAATCCTTGGCGTACCATCATCGT 1080 36 100.0 38 .................................... ATCCATATTTTTCCCAGCAGTAAGAATTATCGGTAAAT 1154 36 97.2 0 ..............................C..... | ========== ====== ====== ====== ==================================== ================================================ ================== 10 36 99.7 37 GTCACTTCTATTCAATGAAGTGGAATTAATGGAAAC # Left flank : AGGTCTGTTGGGTATGATGTAGACATTGCTCTAGTAACCCTGTCGCATTTTTATCTACTGACACAATAGCGTTACTGGAGCTTTTTTAGACTTTCCAAACATCCTCTAAGGGTGCTATTAATAAGATAATTAGTGTGATCACACCGTTAGCTAGGGCTATTCCTAGGTTACGGACTAATGCACCACGGGCAGAGATATACATAAGTTTTAGGTTTTTGACTTGTTTAAATTTGCTCTATGCCTTAAGGTAAGTGCTGGTTTGAAATGATGCTAGTATTTTCGTGCGAATGACGAAATTTAGTTTTTTCTACTTGCTCGGCGACGGGGTAGCTAAAATTGGGAAAGGCTGATTTTTTCGTTGAGGCGGCCGATGTCTCTCTGGATAAGGGTTTTGGGTGATTTTATGCTCTTTGTTAATGCAAAATTTGCTGTTTTCATCGACCCGGCCGCAAATGGCATCTGGACATTCGGTGCAACAAGGGTTTAAATAAGAAGGG # Right flank : CTTCTATATGCTCAGATACCCGAATTCTAAAAAAATTCGGGTATCTTTCTTTTCACAAAAATATAAATATTTAAAAAATTGTTATTTAGATTTACTCATAAACAGATAAAATACTTTCACCAATCCTTTTAACTTTTAATCTAAAATCTTCTGGTTGCACAACTTTGACATTGCCACCAAAGCCAACAACCCAGCGCAGAAATTCTACATCATCTAAATACCACTTAGGTAATAGTAGTTGAAATCGATTAGGAAAATATTTATCTGTCGTTTTCTTCAAACAAAAAATAGATTTTGATAGTGTTGATGTTGACTTACCCACAGGCGGAGACATCTTCATTTGCCTGGGCGGAAATCTCTTTGTACCTTCTGCTATAAACCGAAATATGGCATCATTAAACCATAATTCGACCGTTATAAAAACTTGTAGATGTTCTTGTTTGTCTTGACTAAGAAATTGATGTTGGTCAGTAACACTGTATCCTAAAAAAATCCCGGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTTCTATTCAATGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 4378-3660 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRU010000050.1 Nostoc sp. FACHB-110 contig50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 4377 36 100.0 33 .................................... TAAGGGAATCCACCGGAGCCGTAGCGAAAGCGA 4308 36 100.0 48 .................................... TTGCGCTTGCCTTTACCTAGGCTTAAGTCCCACAACGCATGAGCAATC 4224 36 100.0 41 .................................... AGCTTCTACAATAGGAGACACAGTTAAAGAAGACTTAACAG 4147 36 100.0 38 .................................... TACCTTTCTTCATCGCAATGTCAGCAGCATCAGCAGCA 4073 36 100.0 40 .................................... TTACAGTTGTGGCGAGAATGCCAGAATGCAGCCATCGCGG 3997 36 100.0 36 .................................... TTTAAGTGGCAACGAATACCGCGAAAAAAGCATCGA 3925 36 100.0 40 .................................... TAGCGGTGAAACTGCTGCCACATCAAAGCCCTCGAAGTAA 3849 36 100.0 45 .................................... AACAAGTTAACTATGTTGCCAGAAGGTACGGACTGACTTTTGAAG 3768 36 100.0 37 .................................... TCTATAGTCACCCCATGATATGGGTGTTCATATAAAC 3695 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================ ================== 10 36 100.0 40 GTCACTTCTATTCAATGAAGTGGAATTAATGGAAAC # Left flank : ATCAGAAACGTAAATGCAAAAGCACGGTTTGGTGTTGATTTTGTCTGGGTATCGGCTTGGTTGGTGCGTGTGACTTTTCTATCTTCTCGGAAAAATTCAGAATGTAAATGGCTGTTCATGCGAATGACGAAGTTTTTACTTTACTCAGTGCTGAGTGCTGAGTGCTGAGTGCTGAGTGTTGAGTGCTGAGTGTTGAGTGCTGAGTGCTGAGTGCTGAGTGCTGAGTGCTGAGTGCTGAGTGTTGAGTGCTGAGTGTTGAGTGCTGAGTGCTGAGTAAGAAAAAGATTAGTCAGCACTCTTCATGATTTTTATTACTTGCTGGGCGAGGGGGTTGCTAAAATTGGGAAAGGCTGATTTTTTCGTGGAGGCGGCCGATGTCTTTGTGTGTAAGGGTTTCAGGTGATTTTATGCTTTTAGTTGGCGCAAAATTTGCCATATTTATCGACCCGGCCGCAAATGGCATCTGGACATTAGATGGAGAAAGGGTTTAAATAAGAGGG # Right flank : AAGACTATGCGTATATCGATAGTGGGGTACGCTTCCTTTGTCACTTCTATTCAATGAAGTGTAATGGAAACTAATTTTGATGGGGCGAAATTTTGGGAGAGTGCAAACTTGTTGACTTATGCCATGATAGAAATTATCTCCCGAAAGGGGATTTAGGGAAAGGCGATCGCAAGCTCTTGGTGGAGGACGATCGCCTTTCTTTTCTTGGATTAAAGTATAATTTTATATTTATAAATACTTAAGTAAAAAATATTTTGTGATTCGCTTAATAACTATAGACAACAAACAAATAAAGGCTAAAAGTTAAAGTAGAAAAACTTCTAGGCTTGAACGTTTGATGATTTGTCACTTTCTCATTGGTATTCCCGGTAGTGGGAAATCTACTTTCGCCGCCGAGTTAGCAAAGCAGGGGAATTATTGCATTGTTTCTACTGATGCAATTCGCGCCTCACTTTATGGTGATGCAAGTATTCAAGGTGAGTGGGTGGAGGTGGAGAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTTCTATTCAATGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 30617-31406 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRU010000045.1 Nostoc sp. FACHB-110 contig45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 30617 36 97.2 44 ...................................T CTTTACTTTTGGAAGCTTGCAAATCTTTAATGAACAGCAGGACA 30697 36 97.2 37 ...................................T CGCGCCATCATCCCAAACGATCGTGTCGATGTCTCTA 30770 36 100.0 35 .................................... GCAAAATTACTCTTCGCTTGTGCTATTTTAGATAT 30841 36 100.0 35 .................................... ATGCAGAAACTATCGAAGAATCCTAGGTTGTTATT 30912 36 100.0 39 .................................... TCTTGATAACAAAAAATAAAACCCTTAGCTAATAAGGGT 30987 36 100.0 37 .................................... CTTTAAAGGATCTTACGAAGTTTTTGCTAAATTCTCT 31060 36 100.0 37 .................................... CGATTCACCCTACTACTCTAAAAAAAGTAAGTAGCGG 31133 36 97.2 45 ...................................T CTTAGTTATAATGGGGGTTAACTACATTGGTTAACCCTTAGCACA 31214 36 100.0 37 .................................... CTGGGTATAATCTTTGCATTAACTCAGCCGTATGCCA 31287 36 100.0 48 .................................... TAGTCATTGTCATATTGCCCCCTTCTTCATGTAAGCAGGCCACGCCAG 31371 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================ ================== 11 36 99.2 40 GTCGCTTCTCTTTTGAGAAGTGGAATTAATGGAAAC # Left flank : TTCTAATTTGAGAGGGTTGCAAAAATTTAACTATTGCATCTCCGGCTGCGGCATTTATAAAACTAGCAATTGTAACTAAAGCAGTATTTACAATTACTGTTGCTAATCCTAAAGGAGCTATTAATAATATAATGAGAGTAATGGCTCCATTGAGTAATGCAACTCCTAAATTCCGAACTAACGCTGCACGAGAAGAAAGGTACATAGTTTTGATAGTTTAGATTTCTCTAGGTTGTTTATATCTCTGAAAATAAAAGCTAATTTGATAATTGCCTAGTGTTTTTATGCGAATGACGAATTTATGTAAATTTCTAATTTTTCTGCGGCAGGGTCGGCAAAAGCGGGAAATACCTGTTGTTGCGTTGACCCCGCCGATCCCTTTCTGGATAAGGGTTTTAGCTGATTTTACCCTCTTGGTTAATATTAAAATTTTCGTGTTCGCTAACCCCGTCGCAAATGGGATCTGGACTCTAGCCCCCACAAGGGTTTATAGTAGAGGG # Right flank : CTGAATATGACAGTTTGGCGTGGTAGATGTGGTGTTAAAAGCCTGCACTAACAATGTGATTCATACTGCATTTTTCAAATAAATTTTTCTGACGGATCTATAGCTGTTTTTTTACGGACACCAAATTTTGAGTCTGAAACCTTTATCATGACTGGCTTTGAGAAATTTTCTATCAAAATGAGACTCGTCAAAACGCCGAAAAGCTTGCGTTGGCTACGTTTGGAGCTTTTTTATAAAACGAAAAACTTGACAGGCGAAGGCTGAAACAGTAGTTTTGAATGAGACCCGTCAAAATGAGTTCTAAAAGTCTTGTATTTCAGGGCTTCTGCAACTAAGGGGTCTCCGCCAACAATGCGGAGGCGAATTAATGGAAACATGCTACAACTGCCTTAAGTGGTCAAGGATTGAGTCTCCGCCAACAATGCGGAGGCGAATTAATGGAAACATTTAAGATATTTTCTCTTACACGAACTATCAAAGAAAGTCTCCGCCAACAATGC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTTCTCTTTTGAGAAGTGGAATTAATGGAAAC # Alternate repeat : GTCGCTTCTCTTTTGAGAAGTGGAATTAATGGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 31744-32881 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRU010000045.1 Nostoc sp. FACHB-110 contig45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 31744 37 100.0 33 ..................................... ATGCTACAACTGCCTTAAGTGGTCAAGGATTGA 31814 37 100.0 38 ..................................... ATTTAAGATATTTTCTCTTACACGAACTATCAAAGAAA 31889 37 100.0 35 ..................................... ACTAAAATGGTTCAAAAAACGGTTAAATTTACTCA 31961 37 100.0 35 ..................................... ACTTATAATTACAATGAGTTTGGATTCAAAGATTT 32033 37 100.0 38 ..................................... ATAACGGTGAAGAACGTCGATCCAACAATGAATCCTAC 32108 37 100.0 37 ..................................... AGAAGAACAATGTCAGCGCAATCTACTAGCTGCTAAA 32182 37 100.0 36 ..................................... AATTAAGCTTACGCCCCGTGGAACAACAACGCCAGC 32255 37 100.0 38 ..................................... GAATACTGATCGGCTCCAGCTTTGACCACGGCAGCAAA 32330 37 100.0 35 ..................................... CAACTTCTATAAGTTCTTCTGCTTTGGCGGTTGAA 32402 37 100.0 38 ..................................... ATCTGTTTAGTACTGGTCTTCCATCCTGCCAAGCCATA 32477 37 100.0 37 ..................................... TTTGCAATTTGGGGTGGGGTCGCCTGTCAACTGTTGG 32551 37 100.0 35 ..................................... ACCCGGCAATCCTTGTATACCCGGCAATCCTTGTA 32623 37 100.0 37 ..................................... CGTTCATTTGCAGCTAGTGTTTGAGGTTCGCTTATAT 32697 37 100.0 35 ..................................... ATGTCATAGACATTGTTAACTGGGTTAGGGTTAAA 32769 37 100.0 39 ..................................... ATGACAGCGACAATACCGCCGTCTTTTACTTTATGCAAA 32845 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 16 37 100.0 36 GTCTCCGCCAACAATGCGGAGGCGAATTAATGGAAAC # Left flank : GGAAACCTGGGTATAATCTTTGCATTAACTCAGCCGTATGCCAGTCGCTTCTCTTTTGAGAAGTGGAATTAATGGAAACTAGTCATTGTCATATTGCCCCCTTCTTCATGTAAGCAGGCCACGCCAGGTCGCTTCTCTTTTGAGAAGTGGAATTAATGGAAACTGAATATGACAGTTTGGCGTGGTAGATGTGGTGTTAAAAGCCTGCACTAACAATGTGATTCATACTGCATTTTTCAAATAAATTTTTCTGACGGATCTATAGCTGTTTTTTTACGGACACCAAATTTTGAGTCTGAAACCTTTATCATGACTGGCTTTGAGAAATTTTCTATCAAAATGAGACTCGTCAAAACGCCGAAAAGCTTGCGTTGGCTACGTTTGGAGCTTTTTTATAAAACGAAAAACTTGACAGGCGAAGGCTGAAACAGTAGTTTTGAATGAGACCCGTCAAAATGAGTTCTAAAAGTCTTGTATTTCAGGGCTTCTGCAACTAAGGG # Right flank : CTTACACTTCCCACGTAAAAATTGCAGATTAATTATGCTGATATATACTTCTATTAGAAAAATATAAAGTTGCAGAAATTAATAATTCAAAATTTAGAAAACAATTTTAATATATTTAACAATTGCTATTGATAAACTGCTAAAATAGCTTCACTTGTTTTTCTAACTTTTAGGATAAATTCTTCTGGTTGTATAACCTTCACACTACCACCAAAACCAACAACCCAGCGAAGAAATTCTACATCACCTAAATACCATTTAGGTAATATCAATTGAAGACAATTAGGGAAAGATTTATCTTTTGTCTTTTTCAAGCAAAAGATAGATTTTGGTAATGTATCTCTGACACTGTTTACAGGTAGAGACATCTTCATTTGCCTAGCGGGAAATCTTCTTGTACCTTCAGCTATAAATCGGAAGATATCATCGTTAAACCATAGTTCTACTGTTGTAAAAACCTGAGCGCGTTCTTGCTTATCCGGGCTAAAAAATTTACGCTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCGCCAACAATGCGGAGGCGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.10,-5.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 3 35588-35193 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRU010000045.1 Nostoc sp. FACHB-110 contig45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 35587 36 100.0 35 .................................... GCCATAGCACCATTACAGACTTCAAGTATGTTTAC 35516 36 100.0 37 .................................... ACCTTGCGAGGCTCGAACACCTGGAATCCAACCCCAG 35443 36 97.2 39 ..T................................. ACCTGCTGGTAGCACAACACCGCTCGATGAATCTACTAG 35368 35 97.2 35 ..............-..................... ATCAAATAGCCAGCAATACTCTGATGGCTGATCTG 35298 36 100.0 35 .................................... ATTAATCCTAGTTTTTCTGCAAATAGCACTGCGGC 35227 35 80.6 0 ....CT..................-......CTC.T | ========== ====== ====== ====== ==================================== ======================================= ================== 6 36 95.8 36 CCCTACCGATTGGGTTAAATCGGAATTAATGGAAAC # Left flank : TCTAAATTACAGTAGAAAATTTATTTTTTACTCTGTAGTTATACTTTGTAATAATTATGAGTGTTCCTTTAGTTGCTTTACTCACAGGCATAAGCTAGGGAAAAAATTAGGTAACAAATTAAGTGTTATTTGTAAATATGTAGTGATGTAGCAATAGACGAATTAGTGTGACATTTATATCTTCTCGGAAAAATCAAAAATGTAAATGGCTTTTCATGCGAATGACGAATTTTTTAATGTCTCAGCAATATTTAAGGTTTTGCAAATTTGTAAGATCATTTAACTCTCACGCAGAAGGATGAGAAGTTTGAGATGTTCATCGACACCACTCTAAAAATCGCCAAAACGCTATATCTTTCGTTGAGTGGTGTCGATTGCTTACTGGGTAAGGATTTGAGATATATGTGTGATTCAATTTCACGAATCATGTACAATATTGTTCAGAGTGGTGTCGATTTGGTGGCTAAAACCCTTACGGGGCAAACGCTCCTAGACAAACT # Right flank : TTAAAATCTGAATTACAGATTATGAATTATTTTGTTGTTCGCTTGACAACCATAGACAACAGATAAATAACAGCTAAAAGTTAGAGTAGAAGAATTTTTAGCCTTGAACTTTTGATGATTTGTCACTTTCTCATTGGTATCCCTGGTAGTGGGAAGTCTACATTCGCCGCCTCTTTAGCAAAATTGGGGAGCTATTGCATCATCTCTACTGACTCAATTCGCCACAAACTCTATGGTGATGCAAGTATTCAGGGTGAATGGCTAGAAGTAGAAAAAGCTGTCATCTGTGAGATTGTAGATGCGATCGCTCAAAATAAATCTGTCATTTACGATGCTACTAACGCCAAACGCATTTGGCGGATGGATTTATTAAGCAAGCTCAAAACATCTTTTGCTGCTTTACCCCAACATAGCGGTCAAGTTCAGTGGTTAGGTTGGTATTTGCAAACTCCTATAGCAACTTGTAAAGCTTGGAATCAAAAGCGAGATCGCCAAGTTCC # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 43478-43951 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRU010000045.1 Nostoc sp. FACHB-110 contig45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 43478 36 100.0 35 .................................... ACGACTGGGCGGTCTGCACGGCAGCACTCAAGTCC 43549 36 100.0 39 .................................... TTGGATATTTTCTTTACTTCCAGAAACTTTAACTACAAC 43624 36 100.0 35 .................................... GCGTTACCGTTGAAATCAAATTTACCATCCTTTAA 43695 36 100.0 37 .................................... ATATAGATTTCAGTCCTAGACATAATTTTTTTCACCT 43768 36 100.0 41 .................................... CATAAGAATTATAGAGAAAGTAATCAAGAAAAAATAAAGAA 43845 36 100.0 35 .................................... TTGATAGTTACCCAGTTGGTGTAAGTAGCAAGGTC 43916 36 91.7 0 ...G........T................C...... | ========== ====== ====== ====== ==================================== ========================================= ================== 7 36 98.8 37 GTCACTTCTCTTCGGGGAAGTGGAATTAATGGAAAC # Left flank : GCCTTTCATAAATGCTATTGATTATTTTAATTTATTTTATAAAAGAGAAAAATTAAACAATAAGCTGCAAGAAATAGCAAATTCCTTTAAATAGCTTATAACAAATGTAATCTCACTTCTGCTAGAAGTGAAGCACTACATTATAAAAGTGTTTGTGGTATGAGCTTTATTGGAAATTAAATTAATAGAAAATGGAACACCATTTTATTCTTAATTGCAGCTATCGCTTGTTCTCTAATATGTTGAGGACGAATCAATGAACGCAGCCCAGCCAGTAACTAAACAAATACTCAACTTCCACAGTTGTAGTTTGTTAATTTGCGGCAGGGTCAGAAAAAGTCTGAAAGTAGCATTATCTCGTTTACCCCGTCGATGTCTTTCTGGGCAAGTGTTTCAGAGCTTTTGTCCTCCCCCTATGGCAGAAAAAGTGATTGCTAATTCATACCCCGTCGCAAATGGCATCTGTACATTCGTCCCTGTCTAGGTTTAAAGTGGGTAGG # Right flank : CAATGTAGTGAAAACCAAGCTATATCCGCATTTGAGAGTCACTTCTGGTTAGGGAATCAAAAATTCCTGGACTAACTCACTGGGCGATCGCACTTATATTTCACTCCCCCAACAGTTTTTTCGCGGATCTGTAGTTGTTTTTTTGTAGAAGTCGAAATTGGAGCTTGGAACGCTTACTAAAACTACCTTTGAACGATTTTTAACCAAAACGACATCCGCGAAAACTCTAGAAAGCTTATTTAGACTATATTTGAAGCGTTTTTGAGCAAGAGAGAACTTGACAGGCAATGGCTGAAACAGTAGTTTTGAATGAGACCCGCAAAAACTGGGGCTGTAAGTCTTGTTTTTTAAACCTTCTCAACCCCAGCAGTCTCTACTAACAATGTGGAGGCGAATTAATGGAAACAGCAGGGGTTGGCGGTTTTCTCAGCAGACTTTAATGTCTCTACTAACAATGTGGAGGCGAATTAATGGAAACAAAATCAGAATCAAATTTGGGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTTCTCTTCGGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 5 44320-45075 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRU010000045.1 Nostoc sp. FACHB-110 contig45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 44320 37 100.0 35 ..................................... AGCAGGGGTTGGCGGTTTTCTCAGCAGACTTTAAT 44392 37 100.0 35 ..................................... AAAATCAGAATCAAATTTGGGACGAGCGTAAAACG 44464 37 100.0 35 ..................................... TACCTCATCGTCTGTCTGCATTTCTCCGGACTGTC 44536 37 100.0 36 ..................................... TGTATATTTCTGACTAGGCAAGCTAGTTAGTGCCGT 44609 37 100.0 35 ..................................... ATAAAAGAATCTTTGATCCATTGGAGCATACAAAT 44681 37 100.0 35 ..................................... ATCGGCATTGCTAAGGTGTACAGGGGAGCCAGCTA 44753 37 100.0 35 ..................................... ATTGAAATACCCGCAGGGACAGTAAAGTTACGGTA 44825 37 100.0 34 ..................................... AAGATGCTATCATGGCGCAGAATAGAGCCAGAGT 44896 37 100.0 41 ..................................... ATCAGAAAGCGAACCCTTACCAACGTATTTTGAAAGATAAG 44974 37 100.0 27 ..................................... CCGTCCTTACCGTCCCGTCCTGGTTTA Deletion [45038] 45038 37 75.7 0 CCA..A..........................TGTTT | A [45063] ========== ====== ====== ====== ===================================== ========================================= ================== 11 37 97.8 35 GTCTCTACTAACAATGTGGAGGCGAATTAATGGAAAC # Left flank : AAAGTAATCAAGAAAAAATAAAGAAGTCACTTCTCTTCGGGGAAGTGGAATTAATGGAAACTTGATAGTTACCCAGTTGGTGTAAGTAGCAAGGTCGTCGCTTCTCTTTGGGGAAGTGGAATTAACGGAAACAATGTAGTGAAAACCAAGCTATATCCGCATTTGAGAGTCACTTCTGGTTAGGGAATCAAAAATTCCTGGACTAACTCACTGGGCGATCGCACTTATATTTCACTCCCCCAACAGTTTTTTCGCGGATCTGTAGTTGTTTTTTTGTAGAAGTCGAAATTGGAGCTTGGAACGCTTACTAAAACTACCTTTGAACGATTTTTAACCAAAACGACATCCGCGAAAACTCTAGAAAGCTTATTTAGACTATATTTGAAGCGTTTTTGAGCAAGAGAGAACTTGACAGGCAATGGCTGAAACAGTAGTTTTGAATGAGACCCGCAAAAACTGGGGCTGTAAGTCTTGTTTTTTAAACCTTCTCAACCCCAGCA # Right flank : TTACGACAATGGTACAGAGTTCATTAAATTCACCAACGGCAAAAAAATTACGGTAGAGACTGCATAGCGTTGGGAGTGGGAACGAGTTCTCGAATATGCCACTAATCGATAGCTGACGCTACTCATCCCACTTCACCAGCACACCATCCGCCGCCACAAGCCCCCAATGCGGACACTTCGTCACCAGCTTCTTGATCACGATCCGCAATGCAGGGTCGTCAGCCCAGCATTCCATTAGAAAATTATCCCCTGGATTTTCGCGCCATTGTTCCGCCATCTTAAGCTTCTGTATCCGCCAGGGTTTACTCTCTGTCCGTGCTGCAATCACACCTACTTGTAACGTCATTCCTTCACCGGAAACCGCCGCATCATCTCCGCAACCGCAACCGCCTGACCCTCCTGCGTATACACGACCTCACCCGACATCGCAATCACAATCCTGTTTTTCCGCGCCCACTCAAACCAATCCTTCGCAGCAGATTTAACCTGTGCTGACTCCG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTACTAACAATGTGGAGGCGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 41495-42263 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRU010000055.1 Nostoc sp. FACHB-110 contig55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 41495 37 100.0 35 ..................................... AAAAATTACCTCGCGTTGTTGCAAGCAACCGAGGC 41567 37 100.0 36 ..................................... AACAGATAGTGTGCCAATTATCGCTATGGTTTGGCG 41640 37 100.0 37 ..................................... TTGCTTAATAGCTCTTGCACAATACTATCTATGTTGT 41714 37 100.0 35 ..................................... GATTTACTTCACTTTGAGACAAAATAGAGTTTTGT 41786 37 100.0 37 ..................................... ATTTGTTGCATTAGAGTTAGCAGTTGACTGTACTTGA 41860 37 100.0 41 ..................................... TGGACTACAGTCATTCAACTTTGACGAGAACTGTAGTAACG 41938 37 100.0 34 ..................................... CTTAAATATTCATACCGGGAAACAGGAACATCGC 42009 37 100.0 35 ..................................... AAGCAAACTTAGACCAAAGCCTAAGACCTATTTCA 42081 37 100.0 34 ..................................... CAGTAAATCCCAAGCCAATATTGCAGCACCTTGG 42152 37 100.0 38 ..................................... TAAAATAACTGCCATTAGTATCTTTATGAAGTTTTGTT 42227 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ========================================= ================== 11 37 99.8 36 GTTTCCAAACATAATTTCCCCGCAAGGGGACTGAAAC # Left flank : CCACAAAACCAGCACAAGCCCAAATACCAAAATCTCCAGAAAGACTTGTCCAAGCTACCTCCTGGCGACGTAACCCTCAAGGCAAAATCGAATTAGTTGCCAATCAATCTTCCACTCAAGAACAACAAGCATTAACTTGTACAGCCAGTTTGTTAAGGTAAAAACTAGCTCTGAAGGCTTTAGTATTAATTTTTCAGGTGTACAAGCGGAGAGAGGCTAGAAACTAGAAAAATATACATCATGTAAAAAACTCGACAATCATAAATAATCATTTTATGATTAGATGATTAGCTTGATGTTTGTCAAACCGAAGCGGGGTCAAAAACCCTGGGGGATTTGCCAAAATCGCCAGAACCTTGACAAAAGAATAATTACAGCGTTTCAAGAATTGGAAAAGTTGAGAAAATCTCTCAATTAGAGCGGCTGAAATCGACCTATTTTTGAGATTCGTCAAATCGCTTCCCAGGAAGCTTGCTCTAGTTAAGTTTCAGCACCGAGCA # Right flank : TCGATCGCAGCATCAAAGCATCAATCATCAGTATTGTATTGGCTGTCAAGCTTGCGCTAGAACTTGTCCGAAAAATTGTTACACCCATAGTCCACTCGAACAAAATTAAGATAGTTTTTTGGCAGCTTGACAAGCAAACAATAACAGAGAATTATTCTAGGCTAACTTTTAGCTTAGGCATCCAATAAAGGACTACTATTTTTAACAGTTTGTGGTTCTGTAAAAGCTTCTCGGCCTGTAATCAATCTAGAGCGACGATTACGAGTAATATAGTTCCAAGCCCACTGAAACACTACTAATAATTTAGTGTCAAACTCAATTAAGAAATAGATGTGAACCACTAGCCAAAATACCCAAGCGAGGAAACCTGTAAGTTTGAGAAAGCCTAAATCTACAACAGCTAAATTTTGCCCAATCATCGCCAAACTACCTACGTCACTGTAATGAAACTGTGGTAGAGTACGACCTCTCAAGCGTCGTTTAATCAGTTTAGCTACATA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAAACATAATTTCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 3855-1764 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRU010000064.1 Nostoc sp. FACHB-110 contig64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3854 37 100.0 37 ..................................... TTCTCTATTGTTTTGAACACAGAGTATACACTCTTCA 3780 37 100.0 37 ..................................... GTAAACTTGGTCATCTAATTGGTTTTTTTGTGCTTCT 3706 37 100.0 37 ..................................... TTGCCAATCTTGAACAAGATATCGAGACTTACATTGA 3632 37 100.0 39 ..................................... ATTTTCTCCCGAAAGATGGACGTTCTGACGCACTACTGA 3556 37 100.0 34 ..................................... CAATCCAAAAACCAACAAACACCGGATTTACCAG 3485 37 100.0 35 ..................................... ACAAAATACAAATTTTATATTAAAAATGACCTGAT 3413 37 100.0 37 ..................................... AAAACTAATGCGACTCCACTAATTAACTATTGAGGGA 3339 37 100.0 39 ..................................... AATAGCTTAGAAATAACTATTCCTAAATTGCCCTACGAA 3263 37 100.0 33 ..................................... CAAAGATTATATTGCTGAGAAGTGAGGGGCGAT 3193 37 100.0 35 ..................................... TGGTAGGATTTCGGCAAAGTTACCGTCGTAACCAC 3121 37 100.0 35 ..................................... TCAACACTACAAAAGATGTTGATTATCCTGCTAAG 3049 37 100.0 36 ..................................... ATACCAAAAAAGACAAACGCTACGAAGATAAGATTA 2976 37 100.0 38 ..................................... TTGAGCAAGCGATAGCAGATAGGATATTTGATGCTATG 2901 37 100.0 34 ..................................... AAAGGTGCTTAGTTTTGACATACTCCCCAGCCTA 2830 37 100.0 37 ..................................... TTTACTTCTGATGTCGGACGAGTCACTTTTTTTAGAC 2756 37 100.0 36 ..................................... CAATCAATAAACCAAACTCTTTAAACTCGCCTGACA 2683 37 100.0 36 ..................................... ATGACATTTATATAACCAAAAAAAACTATGTCTTTG 2610 37 100.0 39 ..................................... TTAGATCCGTATTTTGTTTTCAGTTCGTAAATGTTTGAA 2534 37 100.0 38 ..................................... TATCAGATTTTGCTGTATCAGAAATTAAAGCCCGATTG 2459 37 100.0 37 ..................................... AAATCGCTGTTTATTTCTTTTTCCTTAACTTGTTCAG 2385 37 100.0 36 ..................................... CAGCAGTAACTTACAACGCTCCAGCATCGCCTACTC 2312 37 100.0 34 ..................................... AACTACAAGCACCCTTGGACATATATTTGCTGAT 2241 37 100.0 37 ..................................... AGAGGAGACGAGAAGAGTCGAGCCGAGAAGAGGCGAG 2167 37 100.0 40 ..................................... TTCTTCTTTTACTAAAGTCTTTAACTTGTAAGCATTAAAA 2090 37 100.0 32 ..................................... ATGCGATCACGCCTCAACAAATTGCAATAGTG 2021 37 100.0 35 ..................................... TGGGTAGAACTCAGCACCTTTAGCTGTTAGTTCAA 1949 37 100.0 39 ..................................... CTTCAACTTGGCAAGCAATCAAGCGTTCTTCGCGTGTTG 1873 37 100.0 36 ..................................... GGGGGCAAAAAGCACCCTATGAAAGCACTCACGCAC 1800 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 29 37 100.0 36 GTTTCATATTAATGATTTCCGTTTACGGAATTGAAAC # Left flank : AATGTTCAGATATTAAGCCCTCAACTGTTGGCTGATGAAATTAAAAAAGAGTATAAAAAAATATGGGAAAAGCTCTCAGCCGATGACAATCAGGATAAACAAATTTAAATTATCCTACAACTGATACTAAAATATGATATCTCTAACATAGTACTGCTCTGAAGGAACCCGAAGAGTAAGTTAAAATGGGCATTCCTGCCGCAGACAAGCGAAATTTTTGCTTTACGGCTGTTATGCTTGAGAACAACTATTTTTAGTTTTTCAAAAAGTCTGTACCTTGAAAATTAAATATCTAAGATTTGTCAAAAATTTTGGCACGGCAAAGCAGAAGCAAAAACCCCCTACCTGCCGCCAAAAAGCTGTAAACCTTGCTCTCTAAGGAACACAGCTTGTCAATGTCAATGAAACTTAATTTTATCAGTGGCTCAAATGAGGTTTTTTAGTACCCCTGCCAAAATTAGCTGTAGGAAGTAATATGATCAAGGGGTTCATATATCGGG # Right flank : ATTTACAATCTAGGTTTAAATCTGTTCAGGCTTTACCGTTTCATATTACGGAATTGAAACAAGCGCGATTGGTAATTTTCTTGCGTTATCAATACCCCACCGGACACCGCCGCATCATCTCCGCCAACGCAACCGCCTCACCATCCGGCGTGTACACGACCTCACCAGACATAGCAGTCACAATCCTCTGCCGCCTCGCCCACTCAGACCAAGCAACCACCTCCGATTTAGCCTGTGCAGATTCTGGTTTTCGTCCCTCCTTGCAAGCCGCAACAAACACAGCTTCTGGTGACTTAATGCCTTTCCAAGTCCGTATCGCTTCTTTGAGATAAGCGATCGCCCCAGGAACATTGTCCCAATAACGTTTTACTGTACGTCCAATCTCTGCATTGAGCCTGAACTGGGGTGTACAAGCAGGGTATCTCCATCAAGCATTAAACTATAAGAAAGCGAAAATAACTACATAGGAGATGTGTTAACTGTTTGGTTCTGGGAAAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATATTAATGATTTCCGTTTACGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.80,-4.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 2 15315-17108 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRU010000064.1 Nostoc sp. FACHB-110 contig64, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 15315 37 100.0 39 ..................................... CGGGACTTGGAGCAAGTGGCTTTGCTGTTTGCTGACCAG 15391 37 100.0 40 ..................................... AGGAAGTAATCTTTGAGTACCAAATAGATGGTTGCGGCAG 15468 37 100.0 36 ..................................... GATTCCCATGTGGTGCGCTAGAAAAATCGTCAACTA 15541 37 100.0 36 ..................................... TTATAAATGGCTTCCGAAATTCTTCCGATTCTTCAA 15614 37 100.0 33 ..................................... ATCCCCATCTCGTGAATTGTTTCTTCAGCCGCT 15684 37 100.0 38 ..................................... CTCTGCCAGCACCTGGACAAAGAATGGCGAGATGAGGA 15759 37 100.0 39 ..................................... TTGCAGTTAGGGCAAACAGCCGAAATTGCAATATCGGAA 15835 37 100.0 37 ..................................... GTTGGCTTTGAGGTAGAGAGTTAGGAATGATGTATAT 15909 37 100.0 36 ..................................... AAAGCTACCGATGATGCTAAGGGCGATCGCCTCTAA 15982 37 100.0 35 ..................................... GGTGGTCACAGCACAGCGCAAGAAAATAATTCTCT 16054 37 100.0 36 ..................................... TAAAAGGCGTAATCATGCCCTGATGGGCCATATTTG 16127 37 100.0 35 ..................................... AGCTAACTGAGGAACAGGCAAAGCAGAAAAAGAAA 16199 37 100.0 36 ..................................... GTGTCCCGTATGTTTGCAATAAACCTTCTAATAAGT 16272 37 100.0 34 ..................................... TTTTCTTTGACCTTATCGATATTGAAAAATTCTC 16343 37 100.0 37 ..................................... AATTTCAGTTAGATAACGAACTTGATTTAATCAAGAA 16417 37 100.0 36 ..................................... AACTACAAGCACCCTTGGACATATATTTGCTGATAT 16490 37 100.0 37 ..................................... CTCTATACCGTAACGCCTGGGGATAATACCCTGTTTG 16564 37 100.0 37 ..................................... ATTGCATTTGGTTTGATAACAAGCAGCCACATGCGAT 16638 37 100.0 35 ..................................... GTTCGCTTTTAGCCCAAATTGTTTGGCTTCTGGGT 16710 37 100.0 35 ..................................... TGGAACGAGAACGCCAGAAAGAGAAACTAAATATC 16782 37 100.0 37 ..................................... GCACTTTTTCTGGAAGAATTAGTACAAAGTTTGTACG 16856 37 100.0 33 ..................................... GGGCAGCTTACCCACTAATAGATTTGGGGCAAG 16926 37 100.0 35 ..................................... TCACAAGCTATCAGAACGTGACGATCGCCAAGCCC 16998 37 100.0 37 ..................................... GATAATACCACTGCGACCGTCGGGGCTTTGAGTCCGA 17072 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 25 37 100.0 36 CTTTCAAATAAATGAAACCCGTTCGCGGGATTGAAAC # Left flank : GATGACTACTTTGTTCTACCTCATCATTTATGATTTACCTGATAACAAGAAAGCAAATAAGCGGCGAACAAAACTTCATAAAATGCTCTCTGGCTATGGAACTTGGACACAGTACAGTGTGTTTGAATGTTTTTTAAATGCTGTGCAGTTTGCCAAATTGAAGGTGCAAGTAGAGAGCTTGATCAAGCCATCTGAAGATTCAGTACGCATTTATGTTTTAGATACTGGAGCAGTACGTAAGACTATTACCTATGGTTCGGAACAACCTCGACAGCAAGAGACGATCATATTATGATGCTAGTAAGATTTTTTGGCATGGCGAAGTACAGGCAAAAACCCCCTACCTCCCGCCAAATCGACAGAACCTAGACAATTCAATAGTTTCAGCACTTCAAGTACAAATATAGAGCCTTGTCATAAATGCTGGAAACAGACTTTTAAAGTAGACCTGCCAAAAACGGTGTCAGGAACGGCTCTGTTTTTAACTTCTAGCTGGCGGA # Right flank : CTATTAAAATCTCTTAATACTTTTAATAGTTTCATAGAGAGTATCCTTTAAACCCTCACTAGCAGACCACTCGACAACCTCATACTCCAGAACTACTACATCGGGAATTTCTGCGGGGGGTTCTGCTTCTATTACTGCGGTACGCTTGGGCAGCTTGACCACTTTCGTCACGAGAGCAGCAGTAGCTTTGATAGGTGCGGATTGCCACAGAGATCGCCCAGGCAATTGCTGAATCAGTGCCAGTATTTCAGGTAGTTCCAGCGTTTCTCGAATACAAAGGATGTTGCAAGGGTCAGATGCCGGGACTTTATCAATAACAGTGATTCGTGTTTCGATTGTTGTCCCATGCTTGGCGTAAGCTTGACCACTGACCCCAACAGAAAGCACCACGTTGGACTTCTCCTGCCACCTAACGAAAGTTTCGCGCCAAGTGGGATTATTCGGTGAGAACCAATTGGCAGTGATAGTCACTAGTCGTCCACCATCACATAACCTTTGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAATAAATGAAACCCGTTCGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 1 188368-187192 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRU010000011.1 Nostoc sp. FACHB-110 contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 188367 36 100.0 38 .................................... CTCAATCCATCAGCCGTAGCCAAAGGTTGTCCTTCACC 188293 36 100.0 43 .................................... GATATTTCTTGAAGCAGAACTGAAGCGTATACAAGATATTAAA 188214 36 100.0 35 .................................... TATTTGCCCGTTTGACAACATCTGAGGGGTGTTGT 188143 36 100.0 48 .................................... CGATTGCGCTGGGCGATAACGGTTTCTCAAGACAGTTATTCCCACAAT 188059 36 100.0 37 .................................... ACTCAAGTCTTTGAAGGATGGGTACTTTAAAATCAGA 187986 36 100.0 39 .................................... TAGAATCTTTAATCTAGAAGAGACAATTGAGAAGGTTAA 187911 36 100.0 39 .................................... ACGACTGCAAAGAGTAGCTATTAGCCCTACGAGTGCAAA 187836 36 100.0 42 .................................... GTAAGGATATTCAACTTGGGCTTTCTTAAATTGTTTTAGTAG 187758 36 100.0 41 .................................... CCTATACCTCTCAAGTAGTTGGTCGTAAGGTATATCTAAAG 187681 36 100.0 40 .................................... TTGCTAACTCAACTGGCTAGAGTCCTGCCTCTTAAGCAGA 187605 36 100.0 38 .................................... AATGTTACCTTTAAGTTTTGCATTACTTCACGTTTTAG 187531 36 100.0 40 .................................... AGTTGAAGCGATTGCTTTAGTTAGACCTATAGTAGCTAAA 187455 36 100.0 39 .................................... TTGGTTCATAAATATCAGAGTAAAGAGCATTAACATTTT 187380 36 100.0 43 .................................... TTGTTCTCGTAACAGTTCTGATACGGAGTTTTTTTGTTTTTGG 187301 36 100.0 38 .................................... TCCATATTCGGCTTGGTAGTAAATTTCTTATAGGCTGC 187227 36 97.2 0 ..............................A..... | ========== ====== ====== ====== ==================================== ================================================ ================== 16 36 99.8 40 GTCACTTCTATTTAATGAAGTGGAATTAATGGAAAC # Left flank : TTAAGAATCTCTACTTTTGTAATAATTTTATTAATCTTGGAAGGGTGTGTTAAGGCATTAACACGCCCTTATGCCTTTGGAAGCTTTATAAAAAATTGGTATTAGGGAACAGGGAATAGGGAAAAGACTTTCTCCACCTTTCTTGCACAAGGGTGATGAGTTGCGATTTATCTTGTACACAGACAAAACTCGCTTGCGCGGATTTTAAAACCCAATACGGTTCAGTTAAGATACAAGGTTGGGTGTAGCGATAGCGTAACCCAACAAAGTATGCGTGAATGTTGGGTTCCGTTCCTCCACCCAACCTACACCTAGTTTCTCTGCGACGGGGTGAGTAAAATTTGAAAATGCTTGTATTTTCGTTGACCCGGCCGATGTCTTATTGTGTAAGGGTTTTGGGTAATTTTATGTCCTCTAGGAATGCTAAATTTGCTTTCTTCATCGACCCGGCCGCAAATGGCATCTGGACATTAGGCCGTGGAAGGGTTTAAATAGGAAGG # Right flank : AAAAAATTCCTCTTTGCTACAAAGAGGAATTTTTGTTGTTGCTATTGAATGAAGTGAAAAAAGGAAACCATAGTAGAGACATTGCATTGCAACGTCTCCACATATTCGGCAACATAACTATAGATTCTGCTTGCCATTAAAATTTGCTGGCTTCAGCAAAGTATTTGGGGGTGATATCCCAGTGCGTAACCATTCATGCATGGTTGCTGGTGCTTGGACTTTTAATAATTGCGATCGCAGTTCTTCCCCTTCTAAAACTTCTTTTTCTAACGGTGACTTGACATTGCGATCGCCATCAGTTTCAACTAGCATAGTAAATTACTCCTTGATGAAACCGTTAATTTACTGAAACTTACTTACACTCCCATACCCGCATTTCTACTAATATCTGACTGTCTGGCTAATAACTCGCGTACTTCTGCATCGGTAGTTTGTGAGAAGTCGTCATACCAAGCACCAATGGCATACAGCGACTCTGGCATAACTAAACAAACTATTTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTTCTATTTAATGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 1909-242 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRU010000074.1 Nostoc sp. FACHB-110 contig74, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================================ ================== 1908 31 100.0 41 ............................... ATATTGGTTATACAACTTAGGAGTTAAGAGTTGAAGAGTTT 1836 31 100.0 37 ............................... TGGCTGTAAAGCTCCATCTTCAGAACAAACCAACTGA 1764 31 100.0 41 ............................... ATTGTGACAACGGGGAACTCGAATTTACCACCAGCGTTAAA 1690 31 100.0 44 ............................... GATATTGATCACCAACGACAAAAAACTAACGCGACAAACGGTGC 1616 31 100.0 47 ............................... ATATTGGCCAATTTCCCAATTGAAATAAACATAGAGGATAGCGACCC 1538 31 100.0 42 ............................... ATATTGGCCAAGGGTATAAAGGGGCAGGGGGGTGGCACACTG 1465 31 100.0 39 ............................... TATTGCATAATTGCGGCAGACGCGCCCAATCGCTGGCAG 1394 31 100.0 46 ............................... ATATTGTGTTTAGGCACTCGGATGACTGCCGATGATATCTACTGTA 1317 31 100.0 45 ............................... GATATTGACTTTCATTGGCGTATTCAGCATTAATCTGGGCATCAA 1242 31 100.0 45 ............................... GATATTGATACCAAAGTAGTCATATTGGTACGACTATAAAAGAGA 1167 31 100.0 42 ............................... ATATTGTTGAACTCATTAATTGGTGCAAACAGCTAGGGATTA 1094 31 100.0 42 ............................... ATATTGCGGCTAATAATGCTCTCAGCGAAGGGCTGACTACAA 1021 31 100.0 44 ............................... ATTGCGAAGAAGAGGAAACCACAGAAGACTACCCAGAGTTCTAA 944 31 100.0 43 ............................... GATATTGACCTAGAGCGAGAAAGATTGTTCTCTGAAGAATGTG 871 31 100.0 45 ............................... ATATTGCTGAGTCAGCACTATCGACAGAGGACTGCCGATACTAGA 795 31 100.0 48 ............................... GATATTGAGCTCATCTACACCGTGTATCAGACGAATGGTACAACGGGG 717 31 100.0 43 ............................... GATATTGAACAACATAACGTCATCTGTGGTGCATCCACACCAG 644 31 100.0 42 ............................... ATATTACGTAACTTAGCACACTGGTATCAGATGACCTATGAG 571 31 100.0 42 ............................... ATATCCAACTAATATGACTAATTCCTTTGGCGGTTTCTTAGG 498 31 100.0 42 ............................... GGGACTACCAGTAGACGAGGGCATATCTCCCACATGGGGAAA 425 31 100.0 46 ............................... GGGACTGAAACCGGCTTTTTTGTGCTATTCTCCCAAATGATAAGCC 348 31 100.0 45 ............................... GGGACTGAAACGCTTCAAAATAATCTTGATAGTCGAACTGGTCAA 272 31 87.1 0 T.AAG.......................... | ========== ====== ====== ====== =============================== ================================================ ================== 23 31 99.4 43 GTTTCGTTTCCAAACCCAATTTCCCCGCAAG # Left flank : GCCGCTACCACAGCAGCAGATGTGCAACGCGTAGCCAAACAATATCTCAAACCAGACAACTTAGTAACTTTAGTTGTAGGGAATCAAACCACAATTCAACCACCATTAACAGGGTTAGCCAAACAAGTAACACCCATAGATGTAACAATTCCTGGCGTATAACCACAAGCTAAGAATTAATTTCTGTAGAGATGTTGCCATACAACGTCTCTACTTAAATAAGGTTTAGATGTAGCAATTCCCAATTACTATCGACAATCTTCCGTAATGCGCGTATGATTTCTATATCAGCTTGATGATTGACAAACCGAAGCGGGGTCAAAAAACCTGGGGGATTTGTCAAAATCGCCAGAACCATGACAATGTAATAATTGCAGCGTTTCAACTATTAGGGAAGTTGAGAATTAGTCGCAACTATAGCGGCTGAAATCGACCTTTTTTTGAGATTCGTCAAAATGCTTCCCAGGAAGCTGTCTCTGTAACAGTTTCAGCACCGAGCA # Right flank : GGGGACTGAAAAATTTTCTTTCAGTTAACTAAAGCATTGACCAAAAGAATGGGATACAAGCCCCGTCGTTCTACGACGGCTTTTCTTGGTTTCTGATGTACTCCTTTAGGATCTCTAATGGCGCACCCCCTAAGGATACAGCAAGCCCTAACTAGGACTCCACAAGGCTTCTTTGTGGGGTTTCTTGTATCCGGCTTGTCCATACCTGCGACTAGAAACACCTTTCAAAGCATTAACAATTT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCGTTTCCAAACCCAATTTCCCCGCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 180976-177617 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRU010000008.1 Nostoc sp. FACHB-110 contig8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 180975 37 94.6 39 C...T................................ CGAGTTCTACCTTTTGAAGATGTGCCTGGGACTGGTAAG 180899 37 100.0 41 ..................................... CTTATATGATGTCGATGAATTCCGAAAGGGGGTTTATGAGA 180821 37 100.0 36 ..................................... GCTTCAAATAGCCAAGAGACACCTATTTCTGTGTTG 180748 37 100.0 35 ..................................... CTTCAAGGTCAAGCGTTATTGGCACAACTCATAAA 180676 37 100.0 37 ..................................... TGAATCGCTCGGCATCGTGTGGATAAATGAAAAAGAT 180602 37 100.0 33 ..................................... TCAGCGTGACTGTTGGCAGTGGGTATCTTCGTA 180532 37 100.0 36 ..................................... TAGCGGTGACGTTTGGCGAATTCTGGCTGATGTCGA 180459 37 100.0 35 ..................................... CTTACTGCGGTAGATGACAATTCGCTGAAGTTGAG 180387 37 100.0 38 ..................................... AAAATAATCTAAGCAGTTGAATATGCACGTCAGACATT 180312 37 100.0 42 ..................................... CAAATACGCCACGGATAACCCAAAGCTGCCACATCATTGGTT 180233 37 100.0 34 ..................................... TTATTGTTTAATAGCTTTTAGTTCCCCCTAACCT 180162 37 100.0 37 ..................................... TGTCAGCGTCGGGCATCTTGATAAAAGTTGAGAAGTA 180088 37 100.0 34 ..................................... CCGCTAATAGTTTAATGAGCGAATGGTTAGGATT 180017 37 100.0 34 ..................................... TCTGTCTCAAAACTTTGCTAAGGCAAATATCATC 179946 37 100.0 35 ..................................... GTTTCTTTGTATGGTCAGTTCTTTGTTAATGGCGT 179874 37 100.0 36 ..................................... TTATCAAAGAACACCCATCATATATCACACTAGGTA 179801 37 100.0 37 ..................................... AATACTAGTAGTGGAAGTGTTAACCACATGTTCGTGT 179727 37 100.0 35 ..................................... TCTTGCGAGTACGACCGTAGAGATACGACGCAAAA 179655 37 100.0 36 ..................................... TTAATAATGAACGTGGTTATATATGGCACGAGAGGT 179582 37 100.0 37 ..................................... CTAACTTCAACTGTCTGGTAAACTGCGCTACCGTCAG 179508 37 100.0 38 ..................................... CTCCCAAGCGTGTCTTTAAGGAACGCATTCGGTAAGGT 179433 37 100.0 35 ..................................... TAGCGATCGCTTATTGATAAATAATTCTTCTTCTG 179361 37 100.0 37 ..................................... ATTGCCGCCAGCTTGAGGTTAAGTTTCTGTGATTCCT 179287 37 100.0 35 ..................................... ATTACAGGCAATAATTTTATATCTCGAATTCACTG 179215 37 100.0 38 ..................................... TCGCTCTTGCTGACAACGGCATGGTTGCATATAACTAT 179140 37 100.0 35 ..................................... CCTCAAGACTTGCTAGATAGATTGTCTGATGCTAT 179068 37 100.0 37 ..................................... AGAGATTTCATCCATTAACTAACCTCCAGTTTCTTGA 178994 37 100.0 36 ..................................... GGGCGATCGCTCCACTCCCCAGTCTCAGGATCGTAA 178921 37 100.0 37 ..................................... TCTTGATAAACCATTGTATTGACGATAAATAATCGCT 178847 37 100.0 40 ..................................... CAATCCGTAGTATTCGCGGAAGACTTTTATCTGGTGGCGT 178770 37 100.0 37 ..................................... TGTTTGAGGTTCCACTGTGATTATTTGGGGTAATGCG 178696 37 100.0 35 ..................................... AGCGTCTTTCAGGGAAGGATTCTGGAGGAGTGCCA 178624 37 100.0 38 ..................................... GCATATAAGTCCTCTTTGGAATTCTCTCCTACCTCAAT 178549 37 100.0 36 ..................................... ATCCAACTCTCCACGCTTTAGCCCGGTAATCTTCAT 178476 37 100.0 37 ..................................... TTTCATAACTGTTCCGATGTCGGAAGTGAATTTTTAG 178402 37 100.0 41 ..................................... TCTACCAAAAACAACAAGTGGGTACGCAACAAGGTTTCCGA 178324 37 100.0 33 ..................................... GTATGAGACGCGTTGCCGCTAAACATGAGTAAC 178254 37 100.0 39 ..................................... TTAACTGTGAATTAACCTCCGATGTTGGAGTGACGATAA 178178 37 100.0 36 ..................................... GTAATTGAAAATTTAGAACCAGACTTAGACTTGCGG 178105 37 100.0 45 ..................................... TAGGAAATATGGGTAACTCCCTATCAAGAATCAAAGAGAAAATGA 178023 37 100.0 36 ..................................... ACTTATTTGATTATACTCAAGAAGCAAAATTATTTT 177950 37 100.0 38 ..................................... TCTAATAAAGTGCTGATTGATTTAGAAGAATCAGGAGC 177875 37 100.0 35 ..................................... TTTTCGGTGTCCATTGCTGATCCGTCGGAATCCAT 177803 37 100.0 38 ..................................... TTACTAGACATCACTTTAACCCTGGAAAGACTCACAAA 177728 37 100.0 38 ..................................... TTAGATTGTCCTAGCTGTGATAGTTCTAATCTGGTTAC 177653 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 46 37 99.9 37 GTTTCAGTCCCCGTGAGGGGAATTAGTGGTTAGAAAC # Left flank : TTCTTGCCAAGAATTCAGCGATTGCTTTTTTAAGTCTACTATCCCTTCGTAGGTTTTGTTTTGTAGGCGCTCGTATACTACTAAAAAAGCTTGCCGTTGAAATTCTTGATTGGGGGTAAAATTTAAAACTTCCTGTTTATCTGGTTCTTTTAAAGCCACAATCGAAAAAATAGCCATATCGCTTAACGATTTTGCTTTTTTAACTACCTCCACGGCTGTAGTAAGTTCTGTTTCTGTTAAGGGCGTTAAAGGGTGTAAAATCTGCGGTTGTTGAGCAGAGATTTTACTTATTATTCCAAAAAATATACTCAGGCAGATAATAATATTAATGGCTAAAACAGCAAACCGCAGTTTCTTCATCATCTGTCACTAGTAAACAAATAACTTCTATTTATTTCTCAGTATTAACTATATAAATCCGGTTTTATTTCCGAATGTAGTTGTGTATGCACAAATGTTAGTTTTATAAAAAACCCATAGATTTTGCCATCGGACAATTT # Right flank : TGCGCTGTTCTGAAACTGTTACAGAGCAAGCTTCCTGGGAAGCGATTTGACGAATCTCAAAAATAGGTCAATTTCAGCCGTCATAATTGCGACTAATTCTCAACTTTCCCAATCTATGAAACGCTGTAAGTATTTTGTTGTCAAGGTTCTGGTGATTTTGACGAATACCCCGGGTTTTTGAACCCCGCTTTGATTTGTCAATCATCAAGTTAATATAACCATGATATAGCGACCAGTCCGGTTTGTCGAGTACTCATTAGAGAACCTAAATTTAGATCCCCCCGCCTGCGGCGACTCCCTTAAAAAGGAGGTAAAAGAGGGTTATTAGCTCCTTTTTTAAGGGTGGGTTGCGGGGATCTAAACAAGATAGGAACCTTAACCTATTGGTATCAGTCCTGAACTATACAGAAACCAAACGGCGCAAAGATTCAGCACGACGTTTAGCGGTGGAATTATTAGGAGCTAATTTGAGAGCTTCTTCGTAACTTTGTAGTGCTTGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCCGTGAGGGGAATTAGTGGTTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //