Array 1 1036702-1039050 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032986.1 Escherichia coli strain BE2-5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1036702 29 100.0 32 ............................. AGCACAAATATCATCGCTCAAACCACTTACGG 1036763 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 1036824 29 100.0 32 ............................. AAAATAAATGATAATCAGACGGTTAGCAACGT 1036885 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 1036946 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 1037007 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 1037068 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 1037129 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 1037190 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 1037251 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 1037312 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 1037373 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 1037434 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 1037495 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 1037556 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 1037617 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 1037678 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 1037739 29 100.0 32 ............................. TGGCAGGCCGGTAATATGAAAACGACAGAGCA 1037800 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 1037861 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 1037923 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 1037984 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 1038045 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 1038106 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 1038167 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 1038228 29 100.0 32 ............................. TGGCAGGCCGGTAATATGAAAACGACAGAGCA 1038289 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 1038350 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 1038412 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 1038473 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 1038534 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 1038595 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 1038656 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 1038717 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 1038778 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 1038839 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 1038900 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 1038961 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 1039022 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1066046-1067294 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032986.1 Escherichia coli strain BE2-5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1066046 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 1066107 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 1066168 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 1066229 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 1066290 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 1066351 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 1066412 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 1066473 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 1066534 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 1066595 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 1066656 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 1066717 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 1066778 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 1066839 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 1066900 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 1066961 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 1067022 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 1067083 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 1067144 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 1067205 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 1067266 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //