Array 1 63794-62973 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGNV010000028.1 Escherichia coli strain 2/2016 NODE_28_length_63900_cov_0.571449, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 63793 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 63732 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 63671 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 63610 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 63549 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 63488 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 63427 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 63366 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 63305 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 63245 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 63184 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 63123 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 63062 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 63001 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGATTTTTACCAAAATCATTAGGGGATTCATCAGTGCTTAG # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19438-18189 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGNV010000030.1 Escherichia coli strain 2/2016 NODE_30_length_62354_cov_0.714818, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19437 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 19376 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 19315 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 19254 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 19193 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 19132 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 19071 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 19010 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 18949 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 18888 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 18827 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 18766 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 18705 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 18644 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 18583 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 18522 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 18461 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 18400 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 18339 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 18278 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 18217 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //