Array 1 16957-15537 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLQR010000003.1 Streptococcus sp. 10.1 SB3747_S37_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 16956 36 100.0 30 .................................... ACTACCACTTTGCCCGTTTTGGTGGCGATG 16890 36 100.0 30 .................................... CCAGCAGAAGAGACAAAAGGGAAAGGAGCG 16824 36 100.0 29 .................................... CTGCTCAACCTACTACACCAGCTCCAAGT 16759 36 100.0 30 .................................... TGTTAAACAAATTTCTGTTACTGGAAGTGG 16693 36 100.0 30 .................................... AGGAGACGGAACGTGAATTAGCAGGATGGT 16627 36 100.0 30 .................................... TCTTGTTTCGTGATGCTGTACGATTCAACC 16561 36 100.0 30 .................................... CATCACTTGAATTTGCGACTTTATTGAATG 16495 36 100.0 30 .................................... AGTTGAGTTGTCTTACGAAATGGCTATTGA 16429 36 100.0 29 .................................... GAATATCTCGCATAAGAGCGATATAGTGA 16364 36 100.0 30 .................................... ACGTTCGTTTAATTCTCCCACTTCACGCCT 16298 36 100.0 29 .................................... AAGGTTGCATCCCGTCTTGGTATGGTGCG 16233 36 100.0 30 .................................... TACCTTTATTTCATTTGTCTATTCTGTTCA 16167 36 100.0 31 .................................... CACGGGCTATATTTCCCATTACCGTTAGAGA 16100 36 100.0 30 .................................... CATCACTTGAATTTGCGACTTTATTGAATG 16034 36 100.0 30 .................................... TTTTACCAACTCCTGTAGGCCCGACAAACA 15968 36 100.0 30 .................................... CCTCAGCGTTGCCAGAGACCTCAGCGTCGC 15902 36 100.0 30 .................................... GCGTCATCGGTTACTTTCGTTTCCTCCATA 15836 36 100.0 30 .................................... AAGTTGATGAAGTGACCTCACAAGGCATCT 15770 36 100.0 30 .................................... GTGGTATGTTGATGCGTTTGGTCAATACAT 15704 36 100.0 30 .................................... TTTTAATATCATTTGTGGGTAGTTGGGATT 15638 36 97.2 30 C................................... TAATCACTGCTGTGGTTGCTGGAGTCAACC 15572 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 22 36 99.6 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATAGCTTTATTTCAGAGGAATTTTATGATAGTTTTTATAAGGAGATTGGTCAGCTAGTCAAAAAGTATCCAAACCTAACCTTTATTTTGTTTCCAAGTGATCAAGGCTATTTAAAGATTGATGAAGAAAATAGCAAGTTCGTCAATATTTTATCTGACCAGGCTGAGCATTTGTACGATGTTGAGTTTATGTATGAAAGGGTAAAGAAACATTATCCAAGTAATAATTTTCCAACGAGAGAGGATTTTAGGATGTCATTAGAGACCGTAACGCCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTATTGATTCAGTAATTTTGAATATACTAAATCATTTGTTTCACTTTAATTACCGTATAAGATATTCAAAAACTCCTGATGAGGAGCTATTGCATAGATATTTAGAAAGTAAGAATTGACAAGTACAGTGATTGATTCTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTGATTCAACTTAAAAAGCCAGTTCAACTGAACTTGGCTTTTTAAAATACGCGATAAACATAGGGATTGTCAGGTTGACCGACCTCTTTGACCTCAGTCAAATTGAGGATAGGGAGGCTCTGTTTAAGATTTTGATAATAATCCACAGTGATGGTACCAGTGACTTTTACCCAGGTATTATCCTTGAAGGTTTGGTCACTTCCTCTCGTCGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATAACCCTTGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACAAAATCGTTAGGATAGAGGTAGATGAGCTCCATAACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCAGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAGTACTGGATAGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 107893-106800 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLQR010000004.1 Streptococcus sp. 10.1 SB3747_S37_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 107892 36 100.0 30 .................................... CTGACCACGGTTTGCCATTAGATCAATTAG 107826 36 100.0 30 .................................... ACCTAAACCGGGTACGGTTGCAGTCTACAC 107760 36 100.0 31 .................................... CTTTTGAAGATACATATAGCATGCAATCTTC 107693 36 100.0 30 .................................... GTCCTGGTACAAGTATCTTAAGCAACAAGG 107627 36 100.0 30 .................................... GATCACACAAGAGTTCACTTTTATGCCCAG 107561 36 100.0 30 .................................... ATGGAATTACGTAAAGAAGTTAATGCTATT 107495 36 100.0 30 .................................... TCAGTCATGAAGTGATAACACCAGTAGTTC 107429 36 100.0 30 .................................... CTTGCTATTTAGTTGTTTTTCTAAATCTTT 107363 36 100.0 30 .................................... CGGTACGAGATACACCCACAATCGCCCGAC 107297 36 100.0 30 .................................... GGTTTCCAAGAATGACCGAGTATGGTTTTG 107231 36 100.0 30 .................................... TTATCCGTATCTGGTTTAGTAGTCTTGTAC 107165 36 100.0 30 .................................... TTCAATAACAACTATCAAGACCAAGGGCGT 107099 36 100.0 30 .................................... GGTGTATATCCTGGTATGGAACACATGAGA 107033 36 100.0 30 .................................... GAAAGACTTTTCTCTTTCAATTACATATAA 106967 36 100.0 30 .................................... GATTACTAAAATCAAAGAATATATAGCGTT 106901 36 100.0 30 .................................... TTCCCCAATATCTTGTTTTACTGAACGTAC 106835 36 80.6 0 .............A......TA.......T..CTC. | ========== ====== ====== ====== ==================================== =============================== ================== 17 36 98.9 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAATTTTAGTATTCGTCAATAGCTTGTCATATTTTTCTAATGATGAAATTTATCAAATCTTGGAATATACAAAGTTATTACAAGCTAATGTATTATTTTTGGAACCTAGACGGATTGGGAGGTTTCAACAATTTGTTTTAGATAAAGATTACATTTTGATGCCCTATAATAACTTGTAATTTGGTAATGAGTATAGATAGTCTTGAGTTATTTCAAGACTATTTTTTTAGTGTTTAGTGTTTCTGTATAAAGTTGAGTAGAAGAATCATTTTGTTAGAGAGTAGATTATAAGGTTTTGATAGAGGAGGAGTTAAATTGGTTGCCATAAGATTCCTAAGAAATACTCCAATATGGTGACAGTGACATTTTGTCTAAAACGTTGATATATATAGCTTTTTAAGGTATAATAAACATAAAAACGGGATCATTTTGAAGCTGAAGTCATGCTGAGATGAATAGCGCGATTACGAAATCTGGTAGAAAAAAGACAGTCTACGAG # Right flank : CCCATTGTAATGATTTTGGTTGACTTCTCTTCAAACGAATCTTATCATAGAGGAGTATAGTATTGAAATGGGGGAAGAGACATGTTATACGAATATCCGGCGATTTTTCACACGATTGAGGAAGGTTATCAAATTAGTTTTCCTGACTTTGGTCGTAGCATTAGGGCAGATTCTTTGCCTCTTGCCATGACGAAAGCATCTGTGTTTTTATCACATATTATAAAGGGCTATGGAGATAAGGATTTACCTGTGCCGACTGCGGTAAGTAGTATTCCTAATGAGGAAGAACTCGTCGTTTTGATTCAAACAGAGCTTGATTAAGACTAAAAAACTCTCGGAAGATCGATTACCGAGAGTTTTAGTTTTTATTGGCCACATAGACGCCCAAGACGACTAAAATTCCTGCAAAAATTTGTAGATGTGAGAAGGGCTCTCCTAAGACAATAACAGCAGCTAGAATAGATATAATTGTCGAAATCCCAATGAAGGAAGCTGTTCGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //