Array 1 54-821 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPIS01000019.1 Azospirillum brasilense strain V6 seq_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 54 32 100.0 35 ................................ TTGCGGCAAATGTCAGCGAGCTTCGTCATGGGCGC 121 32 100.0 36 ................................ GCTAACCACTATCGAAACTCTAGCTTCACGGCGGTC 189 32 100.0 34 ................................ ACAAGTCCGGCCTCATGAAGTCCTGGGGCGGCCT 255 32 100.0 35 ................................ CCTCCTCATCTGGCCCCTCAGGCGAGGATGGCGCG 322 32 100.0 36 ................................ ACGATCCTGTGGGGGCGGGAGTGGCCGCGGAGTTTC 390 32 100.0 34 ................................ ACGCTCCAGGCCGGGGACAGCCTGGGCACCGGAC 456 32 100.0 34 ................................ CGGGCTGGCCGGGGCGGCGTGTTGCTCGGCAGCG 522 32 100.0 36 ................................ AGTGCGGTCGCGATGCTCGACGCCACGCCGTTGAGG 590 32 100.0 35 ................................ ACCGTCGTGTGGATGGACTTCGACGCCGCCAAGGC 657 32 96.9 34 .........C...................... ACCTTCCACACAGCGGCCTGCTTCCAGGCGTCGT 723 32 96.9 35 .........C...................... GCCACCTGCACCGGGTCCGTGCTGGACTTCACAAC 790 32 96.9 0 .........C...................... | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 99.2 35 GTCGCCCTCTGTGCGAGGGCGTGGATTGAAAC # Left flank : GAGGGCGTGGATTGAAACTGGCGCTCGGTCGATCCATGGCGGTAGACCCGCATG # Right flank : CTTGTAGCGGTGGGCCTCGTCGACGAACAGGCAGTAGTCGCCCTTCGTGCGAGGGCTGCTTCCTCAAGCCGAATCGCTCCTGTTGTGAAAATCGGTTCATGACGGCTCGGGGAAATTCAGCGTTCCCAGGGCATCGGCAGGTTCAGTCTATCTGTAACTTGATACGGGTGTATTGAGTCATGGTTGGGCTAAACCTGTTGATGTTTTAAATAGGTTAAGTTGGACCGACTTTTGACGGTACTGTTTCCATAATAAATCTTAAGACAAATGGGCCGTCACTGCTCAATTATTATCACTGCTTCGGGTGAAGGCTCACGATGTGCTGCGGCGGTTTGGTTCTGCCCGGTTTAGGTGTGGGCGGGGCGCCATCCGTCTGCTAAGGAAGAGGGTGCGGCCGCCAGCCGCGGGTGACGAGAATGCGAAGGGCGGGAAGCGCGTGTTCGTTGATAGCTTTATGAATGACCGATGCCTCTCATGCGCTGATGTCCGGTCCGTCCATG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCTGTGCGAGGGCGTGGATTGAAAC # Alternate repeat : GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.90,-5.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 16488-15986 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPIS01000002.1 Azospirillum brasilense strain V6 seq_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 16487 32 100.0 34 ................................ AGCGAAAACTGGTTCCGCAGTCCAAACTCGGACG 16421 32 100.0 35 ................................ GCCAGGACCTCGCCGACAATCGGGTGGCCGAGATC 16354 32 100.0 35 ................................ TGCCCCATGAAGATGGGCTCCAGGGCGGGCTTGAG 16287 32 100.0 37 ................................ AGCACGAAGGCCGCCGGCTCGGCGATGCCGACATGCG 16218 32 100.0 35 ................................ CCGCTGGCGTCCAGTGCCTCAAGCCAGTAGTAGCG 16151 32 100.0 35 ................................ TCGACGACCTCGATGGCCGGTTTGAAGCCGTCCTC 16084 32 100.0 35 ................................ CGTCCGCGTCCGCTTGGTCAGAGCGGGCGCGGCGG 16017 32 96.9 0 ....................C........... | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 99.6 35 GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC # Left flank : TCGTGCGCCAAGGTCCGCTTGCCTCGGCCGGAGCGGCAGTCGAGGCATGGCCTCCTCCCAACGGAATGGACAGCGGTTCGGGCGGTCGTTCGCTCGGCCCGTTAAGGACTTTTGTTCGGGAGAGGGGTGCGGTTGAGTGTCGGAAGAGGATAAGGATCGTCGTAATCGTCAAGGCTGAGGAACGGGTTCCGCTTTCCCCATCTGGGAGCACATGGCGCCCGCCGATGTGCAAACGGTGGGCGGAACACTGATCGGTGTCGAGGCGGCCTGCCGTATCGAGCACAGGGTGTCAAACCGGTGCTGGATTTCGGCGACGCGTTGGTTTTTAAATCGGTGCGAACCGGAAGCGGACATGAAACCCCCGAGGGGTTCGCACATCATTCTCATCAATGACTTGTACGGTTCCGACATCGAGATGGCCGCTTCTCGATTCGCTCCCGATGGAGGTTCGCGCCCGTTGGGGGATTATGGGTTGTTGAACAAGTGCATAAAGATGAGGA # Right flank : AGATTATTACTATTTCGAATGCTTTGAATCGGGCCATCTTTATCATAGAACCCAAGTCACGCTAGTTCGGATGGACCCTGATTTCTCAGAACATCAACAAAGACTGCCCAAGCGTGACCCGACATAAGCGGCTTCGTCACTGGGAGATGGCCCTGACGGCGAAGTTTTGACGGAGCAGCACCATGGGGCCGATCCCGCAGCCCCGATCGATTGTCCTGCCCTCGCGCCGGTTCTATTCATAAACGGCGTTTCTGACATCGGTCGGAAACGCCCCAGCCATGCCTTCGAACGCGGTGTTTGTCAGGGCAACCACCGAGAGGCCGTTCTTGCGGTCGATGAACCAGGAATGGCCGTAGGCACCGCCCCATTGCAGCGTGCCAGCGGCCTGCGGTGTGCCCGTCAATGCCGGATCGTCCAGCACCGCCCAGCCATAGCCGAAGCCCCAACCCGGCCCCTGCGTTTGCGCCGTCGCGCCGACCTGATCATGGACCATCAGCCCG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : NA //