Array 1 53151-52268 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGJA01000013.1 Escherichia coli strain DH5a Scaffold_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53150 29 100.0 32 ............................. GCAAAACCCTCGACTGGACAAATACCGGCGCG 53089 29 100.0 32 ............................. GTCTGTTATGCGAATATTTTTATTCTACTTTA 53028 29 100.0 32 ............................. GTTTTTACTCTCTGCCGCTGAGCGTCACACGG 52967 29 100.0 32 ............................. GACTGCATATGAGCACGAGACACCCGGTAATT 52906 29 100.0 32 ............................. CTATTCCCCTGACCGGACATACCCTGGACAAT 52845 29 100.0 32 ............................. GGCGTCAAACTCTTTGTCACTCATACCAAAGA 52784 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 52723 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 52662 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 52601 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 52540 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 52479 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 52418 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 52357 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 52296 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 79680-78854 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGJA01000013.1 Escherichia coli strain DH5a Scaffold_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 79679 29 100.0 33 ............................. GGACCGACCAGTGGCGGCGGGGTAAATAAATGA 79617 29 100.0 32 ............................. TCTTTCTGCTCTATCCCTGAAGAGCGTACGTC 79556 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 79495 29 100.0 32 ............................. TAAAAATTAGGCTTCCACGCCTCAACGCCAGT 79434 29 100.0 32 ............................. CCCTCCAGGCTATCGCAGCACTGGTCCCGTTT 79373 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 79312 29 100.0 33 ............................. GGACCGACGAGTGGCGGCGGGGTAAATAAATGA 79250 29 100.0 33 ............................. GGACCGACGAGTGGCGGCGGGGTAAATAAATGA 79188 29 100.0 33 ............................. GGACCGACGAGTGGCGGCGGGGTAAATAAATGA 79126 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 79065 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 79004 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 78943 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 78882 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //