Array 1 428491-432430 **** Predicted by CRISPRDetect 2.4 *** >NZ_UAWF01000001.1 Clostridium perfringens strain NCTC8798, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 428491 29 100.0 36 ............................. TAATTATAAGATTTACAAGACCTTTGAAGTTCAACA 428556 29 100.0 37 ............................. AACCAACAAGACCCCACAAAGGAGCTAACATTAATTC 428622 29 100.0 36 ............................. TTAATTAAATCAGCTCTATATTTAAAAGCATTGTCA 428687 29 100.0 36 ............................. AGATAACACTATAACCTAACTTTCTATGCTGAGAAA 428752 29 100.0 37 ............................. TTAGTAACTGCACCTTCATGATTTTGCAATTCAAGAG 428818 29 100.0 36 ............................. GCTTAAAATGTTAGATAATAATACTACTAGTTCGGT 428883 29 100.0 35 ............................. TTACCATTAAATTTACCGTTTAACTCTCCCTCCAA 428947 29 100.0 37 ............................. TTATAGAAAAAGTATAAACAAATTTAGGCTCTATAGA 429013 29 100.0 36 ............................. TTCATTATAAAGATAGAAGAAAACTATCTATTTATT 429078 29 100.0 36 ............................. ACCATAATTATAAGACTTACAAGACCTCTCTAACTC 429143 29 100.0 37 ............................. TTGGTAATATCCCACGGAATACAAAATGGAAAAGCTT 429209 29 100.0 37 ............................. TTTAATTGTAGATGCAATCATATCATTTTTATCCATC 429275 29 100.0 36 ............................. TACTATCATGAAGGTAGAAAAGTTCTTGATGAACAA 429340 29 100.0 37 ............................. AAGTACAAAAACATCTTAGATTATAAGCTAGGGGACA 429406 29 100.0 36 ............................. ATATAATAAAGGCAAGTAAATAAAAGATACTTCTTT 429471 29 100.0 36 ............................. TGCATGCTAGGGTTACTATGGATTATATTTATTTAA 429536 29 100.0 36 ............................. GTTTATTCAATTTAACTTTACTATTATAACTACCTA 429601 29 100.0 36 ............................. TTATGATTCTGCAATTCGAGAGCTTTTTGAGTACAA 429666 29 100.0 35 ............................. TTGAATTTACCATCAAGTTCTCCTTCTAAAGCCTT 429730 29 100.0 36 ............................. TTTTCTTAACATCAAATACCTTATTTTCATCACCTT 429795 29 100.0 36 ............................. TTTAAAGGCTACGCTTCGCTATGTCTGCGACGCCAC 429860 29 100.0 36 ............................. CCATTACAACCAATAACAGTCACAACACAATAAGTA 429925 29 100.0 37 ............................. ATACAAACTATAAAAAAATAGCTAAGATTATTATTAT 429991 29 100.0 36 ............................. AGCAAGTAAACTTGCTATATGATGTTTTTTATCTTC 430056 29 100.0 36 ............................. TATCATACATAATATTACCGTCATTATCCAAGTTAC 430121 29 100.0 36 ............................. CAGAAAAAATTAAAGAGCATACGAGACCAATAAAAA 430186 29 100.0 36 ............................. TTAAAAAAGAAATTAGCTATATTCTCCGCAGTCTTA 430251 29 100.0 37 ............................. GTTCACGATTATCAATGACAACTGTTAAGTTACTTAA 430317 29 100.0 36 ............................. GAACTTATAAAGAGTGGTAAGAGTGTCGGAGATATA 430382 29 100.0 36 ............................. ACAAATTTCAATATCATTAAATGGTAAATCAGTTGA 430447 29 100.0 36 ............................. ACAATATTCATCAACATTAACACTATTTTTCATACC 430512 29 100.0 36 ............................. AACCTAAAAATAGGAGATACAGTATAAAGAGTAGAT 430577 29 100.0 36 ............................. ATTTTGCGTTAAAAGTGTAAGAAGTTCTACAGGGAA 430642 29 100.0 36 ............................. AATTACTATTAACAGTTTTAAGCTCATCAAGTTCTT 430707 29 100.0 36 ............................. ACGCATAATGACACTATATACATAATACAAAGCAAC 430772 29 100.0 35 ............................. TTTTCTATAAGCTGTACTTTTAGCTCCACCCATAA 430836 29 100.0 36 ............................. TTGAAAATGTAATAACTCTTATTTTAAGAGAATATT 430901 29 100.0 37 ............................. TTAATATTGGAGGAATTAATGAGATATAACTTTACGG 430967 29 100.0 36 ............................. TTCTAGGAAAGGTTTTAAAAGTGCAGAAGAAGTCCA 431032 29 100.0 36 ............................. AGAATAGAAACAATAATTGGTGCAAGTTCTTGTTCT 431097 29 100.0 35 ............................. ACAAATCATATTTTCAAAAAGGTTCCTGTAGCTCA 431161 29 100.0 36 ............................. TTCTAGGAAAGGTTTTAAAAGTGCAGAAGAAGTCCA 431226 29 100.0 36 ............................. CTTTTTTTTAGCTCTGCAAGAAGTAAGCAGAACAAC 431291 29 100.0 36 ............................. AGAATAGAAACAATAATTGGTGCAAGTTCTTGTTCT 431356 29 100.0 35 ............................. ACAAATCATATTTTCAAAAAGGTTCCTGTAGCTCA 431420 29 100.0 37 ............................. TTAAATTTTAGCCAATAGTAGTTAGAATCTTTATAAA 431486 29 100.0 36 ............................. TTAATTTTGCCAGAGTAATTGATTTGATTTTTACAA 431551 29 100.0 36 ............................. ATTTTATTTTACCTGCTAGCATATTCATTTTAGATG 431616 29 100.0 36 ............................. AACGATAACGCAGATTACATGAGTGTTGTAATAAAT 431681 29 100.0 37 ............................. AAAGTTTTTCTAGTAGCTTCTGCTACTCCTATATATT 431747 29 100.0 36 ............................. ACTGTTGAATCAGGAATTTTAGACAATGCTTCTAAA 431812 29 100.0 37 ............................. CTCATATCAGTTGGGTAGGATGGGAATCTATTACAAA 431878 29 100.0 37 ............................. TCAGAATTTTTATTAATTTCACCTGAACTTTCTTCTA 431944 29 100.0 37 ............................. GTTATTATTTCAACTTTTCTTTTTATCTCTTCATCCC 432010 29 100.0 37 ............................. AGAAAGAAATCATTGACCCTATAGGGAAAAGCCAATT 432076 29 100.0 35 ............................. TTATTCCCTAAAGCGTTCTTATTCCCTTTAGGAGC 432140 29 100.0 35 ............................. TTATGTAACTAAGATTACAACTTTTATGAAATGGT 432204 29 100.0 37 ............................. TTTATAATGCTCTCGTTGATCATCTGTTAGTTCAAAC 432270 29 100.0 36 ............................. TTTTGATTTAACTCTACAAGCTTTAAGCAACTCTCT 432335 29 100.0 37 ............................. TTGCTTTTTAAGACACATTCTAAATATGTGCCTTCAT 432401 29 86.2 0 .................GAA....C.... | T [432428] ========== ====== ====== ====== ============================= ===================================== ================== 61 29 99.8 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTGAAATTTGGG # Right flank : TATATATAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATAAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTAATACTTAATACTTCCAATATATATGATAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGATATCTGTCCATTTTTACTTAATTATTGATATATACTTATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACATTTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //