Array 1 4045975-4046365 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021118.1 Streptomyces sp. CLI2509 strain CLI2905 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4045975 30 96.7 31 ............................C. GCTCGGTCCTCGCGACGGGCGGACCGCGGGT 4046036 30 93.3 31 ............................CA CCCTCATCACGCGCGAGTCCGGCTGGAACGC 4046097 30 100.0 31 .............................. ACGAGGCCGCGGCCCTGCTGCGGCTCGGCGA 4046158 30 93.3 31 ............................CG TCTGCGCCTGCGCCGAGGTGCGCCAGCAGTT 4046219 30 70.0 26 ...............A..CC.CCCC..G.C CCGGTGGGGCGGCGTACGGTGACGTG 4046275 30 100.0 30 .............................. CGACCCCAGCCGCCCGAAGTGGCAACAGAT 4046335 30 86.7 0 ......................C.C...CC | T [4046337] ========== ====== ====== ====== ============================== =============================== ================== 7 30 91.4 30 CCGCTCCCCGCGCGTGCGGGGATGGCCCTT # Left flank : CCGCCATGGAGGGGGCCGATCCGGCGCGAGCCGCGCTGCTCGCCGTGTGGCACGACTCGCAGGAGTCGCGGACCGGCGACGTGAACTACCTCGGCCGGAAGTACGCAGACCGGGCCGACCCGGAGGCCGTCACGGCGGACCAGGTGGCGGGGCTGCCGGAAGCGGTGGCCGAGAGCGTGCGGGGTGTGGTCGCGGAGTTCGAAGGGCAGGGATCGGCGGAGGCTGTGTGCGCCAGGGATGCCGACAAGCTGGAGTGCCTCGTGCAGGGCGTCGAGTACCGGGCGCGGGGCTACGCGGACGCGCAACGGTGGATCGACAACTCGTACGGGCGCCTCACGACGGCCTCGGGGCGAGAGCTCGCCGACGCGGTGCTGCGGACGGGGTCGCTGGACTGGTTGCGGGAGGCGTTGGGGGAGGGTGAGGGAAAGTCGTAATTGCCGGAGTCAGTGCTTCTTGCGGAAACCCCACCGGGCGATAGCCAAACTCGCTGGTCAACGAGA # Right flank : CAGGGCACCCCGCCGAGGTGCCCCCTGATGGTTGCCCCCCCCGCGGCGCCCCACCCCCTCCCCCATCACCCCCTGTTTACCGGTCACCCGCCCGGCTACTGTTCCCTCACACCGCGCCCGACCTCACGGGCGCCGCACAGCACGGGGGAACCATGATCGAGGCCGTCGGTGTCGGGGACAGGTGTCCTTCGACGGGCAGTACGTGACCATCACTCGCAGGGGCTTCCTCGCGCGCACCTCGGTCGGCAAGGGGGAGAAGCGGATTCCGCTCTCGCAGATCTCCGCCATCCAGTGGAAGCGTCCCGGGCCGCTCGTCAACGGGTTCATCCAGTTCACCGTGCCCGGCGGCGTCGAGGCGCGGTCCAGCTTCGGCAGCCAGACGGCGAGCGCCTCGCGCGACGAGAACAGCGTCACGTTCGACAAGAAGCGCATTCCCGAGTTCGAGGCGCTCCGCGAGGCCGTCGAGGATGCCATCGCCGCCCTGCGCCAGCCCGCACCCC # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCCCCGCGCGTGCGGGGATGGCCCTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4078804-4079564 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021118.1 Streptomyces sp. CLI2509 strain CLI2905 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4078804 30 100.0 31 .............................. CGCGGGCCAGGTGGTACTGCGCGCGGGGGTG 4078865 30 93.3 31 ............................AC GGTTTCGAGCGCTGAGCCGTGGCGCAGCTCA 4078926 30 100.0 31 .............................. GGTCACCCGCGTCACCCAGTGGGGATACGGC 4078987 30 96.7 31 .............................C CCGAGACGGCCGTCGCCGTACGGTCCGAAGG 4079048 30 100.0 31 .............................. CCTTCGTGATGCGCTGCTCGGTCGGCGCAAG 4079109 30 96.7 31 .............................A CCACGACGACCTCCCGCTTCTCCTCGGCGCG 4079170 30 90.0 30 ........................C...GC GGCGGCGTTCGCGGTGGTGATCCACGGCCC 4079230 30 96.7 31 .............................G GGCCCGGGTCGGACATCCAGATCCGGGACAA 4079291 30 96.7 31 .............................C GCCCCGTCGACGAGCACGACCGCGAAGACCA 4079352 30 100.0 31 .............................. CCCAGCGCTTCCCCGCGAAATGCACGCGGAA 4079413 30 100.0 31 .............................. CCCAGCGCTTCCCCGCGAAATGCACGCGGAA 4079474 30 96.7 31 .............................G GCCTTCAGGTGCAGGACGCCGAGGGCCAGCA 4079535 30 93.3 0 ............T................G | ========== ====== ====== ====== ============================== =============================== ================== 13 30 96.9 31 CTGCTCCCCGCGCGTGCGGGGATGGCCCCT # Left flank : GCGGTTCCCGCCTCGGCCGTACGGCCTTCGCCCGGGAAATACCCTCCGGGCCGTACGGTACGGGGGGCGCGGACGGGGCTCTGCGAGGCGCGCGGCGGGGCCCACCGACCCCCCGTACCCCGGCCTCTGCCCCACCGTGCTCCCGGGGATGCGCACCGAGCGCCCCCTGTGCCGGGATTCCGGGGCGGGGGAGGGGGGTTGGGGGCGGGGGAGGTGGCGGTGGGGGTCACCGTATGGGGAATGCGGGGGGCGCGTCGTGGGGCCAAGAGGTTCCGGCGCCTCGGGGTGCGATCCGCTGCGTGGCGGCCCCGGGGGGCGAGCCGGCTGCGGGCGGGGTGGCCGTGGGGGGGCGGGCGTGGATGGGTGTGGATGGGCGTGGCCACGCGGGAACGGGCGTTAGGCTGCGGACGGTCCGAAGAGCTCGGGCGCCGAACCGTCTTGTCCGAAAAGCCGGACTCTCCACTTCTTGCCGAATCGACGCCATCTCGAAGCCAAAAGGG # Right flank : GTGGTGGACGCCGGGCACGCCGAGAATCACCCTTGCTCCCCGCGGTCACCACGAGACCGACTGGGGGTTGCGGTGTGCGGAATGCGCATCGTGGTCAGGTGCGGCGGGCGCCGCGCTACGGAAGCTACGACAAGCCGCAGCCCCAGCACACGCGGACCTGCGGCGTTTGCGAGGTCCGGTGCGGCTCTGGCGGCGACTGGTGGTGAACGTCAGATGTGCGCGCCGTCGAGGAAGTGCTGCCACGCTGTCGGGCTGAATCCAAGGTGCGGGGAAGCGAGATCCTTGGAGTCGCGAACGGCTAGCCGGCCCCGGGAGGTGGCGACCTCGACGCAGTTGCCCTCGGTGCCGGAGTAAGGGGACCTGATCCACGTGGGATGCTGTGGATCGTCGTGCTGGTGGTTCACTCGCCTGCCATTTCGTTCAGGACTCTGCGGATGAGAGCCCGCGATTTCGGGGGGTCGAGCGCGGCCATGTTGAGGCGCCGGAAGAGGGCGGCGAAT # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGCCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4081924-4082809 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021118.1 Streptomyces sp. CLI2509 strain CLI2905 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4081924 30 100.0 31 .............................. GCGCATCCGAGAGTCCATCGAGGGCCGCTTC 4081985 30 96.7 31 .............................T GGACCGCGCCGATCCTCCCGCTCGTCGTGGA 4082046 30 93.3 31 .....A.......................A CGGGCGGGGCGAGGTTCTTGCGGCGCTTCTT 4082107 30 100.0 31 .............................. ACAGCACCTTCGTGGCGCAGCTCGGTGAGGA 4082168 30 100.0 31 .............................. ACGACGGCACCGACTTCTCGTGGGACGGGTG 4082229 30 93.3 31 ............................TA CAGGCCCCGCCTCCCCGTCCCCAGCCCTGAC 4082290 30 96.7 31 .............................C TCGGGGACGCCTCGCGGTAGGTCTCAACGCC 4082351 30 96.7 31 .............................C CACCTCGGGCGAAACCGCCCATCTTCTTCAG 4082412 30 100.0 31 .............................. TCCTCGCCGACGCCACGGCCCTCGCCGAGGA 4082473 30 96.7 31 .............................C AGCACCTCGGCCCGCGCGAGGACTGCCCCCA 4082534 30 96.7 31 .............................C GACCCGGCGAGCCCCCCGTTTGATACGAGGT 4082595 30 93.3 31 ............................GC AGTCGGTCTACCGCTGGCGCGCGGCCCTCAC 4082656 30 96.7 31 ......................C....... GCGTGCAGTTCGCCGACACCCTGTGCTCAAA 4082717 30 90.0 31 ............T...............GA ACGAGAAGTTCGAGGGAGGCCGCGCCGGGAA 4082778 30 96.7 0 ............T................. | T,G [4082782,4082796] ========== ====== ====== ====== ============================== =============================== ================== 15 30 96.5 31 CTGCTCCCCGCGCGTGCGGGGATGGTCCCG # Left flank : ATCCGCCAACGGGCGGGAGGTGGCGGCCCGTGCGACCCCTGGCGCGTGACGCGGAACGGCTGCTGTACGAGGACACGGCGGTCCCCGGCTTTCGCGTACGGAGCTGGTGTCTGATGTGTGGGAGGTACTCGCCGGAGGGCGTGAACGCGGACTCGGCGCGGATGTGGTGCCTGGAGCACAACCGGACGACCGGCCATGCCAGTTATCGCGTGGCAGAGACGCAGTACTTGGTGGTGGCCCGGGAGGTGGGGGAGCCGGGGCGGTGCCGGTGTCGGAGGGGCGAGCCGGAAGGCTGAGGGGGGCGCGAGGTGAGGCGGTGATGCGGCGGGGAGTGCCGCTGGCCGGCTAGGGGGAGCGTGGCAAGTCGGAGCGAGGTGCCGCAGGGCTAGGCTTCGAGCGGATCGCGCCTTGCGACGGCGGTCCGCTACACCCGAAAGGTCGGATTCCTCGATCCTTGCGCAACTGCCGCCATTGGCCCGCTAAACCTGCTGGTCACGCAG # Right flank : GGGAAGGGCGCGGAGTCGCTGAAGTGGATGGGCTGCTCCCCGCGTGCGAGGAAGTTTCCGCTGCGGGACGGCGCCGCAGGATCGGCCTACGCCGATCCGGGCCGTTTCAGCAGCAGTTCGTCCCCCGCGCGGAAGCGCTCGGCGCCGCCCTCCTCCCATGTCACCACCACGAACAGGCCACCCACGTACGACCACGAAGCCTGCGGGGTCACGCAGGCCGGGGGATCGGGGCGCAGCTCGCCCGGCGGCTCAGTGGTGCGGGCGAGCCGCTCGTCGATCTTGCGTGACTCGGCCTGGGTCGCTTCGGCGAGTGGGATGCCGGTCGGATACGTACGCCGCGCCCCCGCACTGCCCGGGGGTGCGCGCCCGTCCGTCTTCGCGATCCGTCCCGCTATGCTCCACCGCATGTCCACCAGCACCCCCGAGCCCGCGCGGCGCGGTCTCCTCACCGAGCGCATCGCACGCGAACTAGAGCACGGGATTCGGACGGGAGAGTACGC # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 4084089-4085286 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021118.1 Streptomyces sp. CLI2509 strain CLI2905 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 4084089 30 96.7 31 .............................A CCTCGCAGACGCACCTTGTCCTCGGCCGCGC 4084150 30 100.0 40 .............................. AAGTCGGGGACGGTCTGGAACCACTGGGCGGCCTGCGCGA 4084220 30 96.7 31 .............................C AGTGCTCGGCGATCAACGGCGGCGGGCAGAA 4084281 30 100.0 31 .............................. CTGGCTACAGCGGGAACACCTTCGGCGACGA 4084342 30 100.0 31 .............................. CGGCGCTCAAGGCGTCGGGCTTCTGCAAGGT 4084403 30 96.7 31 .............................A GCACGGTCATCCCGAAGAGGGATTTACGGAC 4084464 30 100.0 31 .............................. CTGCCGGGCCGCCCGCCGGACGCCGATCGGC 4084525 30 96.7 31 .............................C TCCTCTACCAGCCCGGGAGCGTTCCAGGGCT 4084586 30 96.7 31 .............................T TCGAGGTCAGCACGAGAATCGCCGCTACAGT 4084647 30 96.7 31 .............................C ACCCACCGTGCTCGGGCAGATGATTTCCGTC 4084708 30 100.0 31 .............................. CGGCCCGACCGCGGTCGTAGGTCGCGGCGAC 4084769 30 100.0 31 .............................. CTCCGGCCGGCTGCCCGCTGTCGGCCTCCTG 4084830 30 96.7 31 .............................T TGCTCTCCTGCCACAGCTGTGCGGCGAGCAG 4084891 30 100.0 31 .............................. GTGGCGGTGAAGCTCGGCGAGACTCGGCGAG 4084952 30 96.7 31 .............................T ACGAGAGCGGCGGCTGGGCGGGGAACACGAA 4085013 30 96.7 31 .............................T CGACGTCGCGCTACGTCCGGGCCCGCCGCGA 4085074 30 93.3 31 .........................C...C CGGAACTCTTCGAGGAGTACGCCGACGCCGA 4085135 30 96.7 31 .............................T GCACGCTCGGCGTGACACCTCTCGCTGTCTC 4085196 30 96.7 31 .............................T TCACGAACGCCTCGCTGTCGCCCAGGACGAG 4085257 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 20 30 97.9 32 CTGCTCCCCGCGCGTGCGGGGATGGACCCG # Left flank : ATCGCGGTCATGCGGGCCGCCGTCGTCGCCCTGGAGTGCGCGGACGAGCCGGTAAGCAAGGCGCGGGCGGACCTGGAGTTCCACGAGGCCATCGCCGTCGCGGCCGGAAATCCCGTACTGCGGATCATGCTCTCGTCCATCAGCGGGATGATGTTCGAGATGATGCTGCGCTCGAATTCGGACCCGAGCATCGCCGAGCCGGGCGTCCCGCACCACCCGGAAATCTTCGAGGCCATCGAGCGCCGCGACGCGGAACTGGCGGTCGAACGGATGAGGGCGCACCTGCGGTTGGGACTGCGGACGTACGGGCGGGATCTGGACGTGCAGGTGGACGTGATGGCAAAGCAGCATATTGAGATGTTGTTGGGGGAGGGGCGGGGGTGAGCGAGAACGGAGGTCGGGCCGCCATGGGTTGTATGTCGGATGTTGTAGATATGCCGGAATTCGCAATTGTTGCGCGAACGGCTCCGGGGCGGGGGTAAACCCCTAGGTCGGAAAGA # Right flank : GCGTCGTCAATGGCGCGACCCGGGGGCTGCTCCCTGCGTGCGCAGATGTAGTCCCGCCCCAGCGGAGGCGTGGTCACCAACGGCGAGCGCCCCCGGTATCTGACGGCTCCCTCCCGCCCCATCAATCCCTCCCGCCCCCTAGCCTCCCCCCGCGCCTCCTGCTAGCCTCCCTCTCGCCCGGCCCAACTGGTCCTACCAGTCGGACCGCCGAACCACCCGCCCCCGAGGAAGCCCCCGCATCCGCCCCCACACCCCCGTCCTCCCCCGTCCCCCGCCCCAGAGAGGTGGCACAACGATGTCCACCCCCCGGCCCCCGGTCGGCCGCCCCGCAAGCCACCGGCCCCCGACCGGCAACCCTGCCAACTCTCCAGGCCCCGAGGCCCCGGCCTCCCGCCCGGCAAGCAGCACGCCCGCGCGCGCCGAACCCCCAGCCCCCCACCCCGCACGCAACGCACCCCCCACCCCGCCCCCCTCCACGCACCGCCCCCCGCACGACGAGC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //