Array 1 1108336-1113646 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMFP01000003.1 Pelomonas sp. Root1444 contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1108336 37 100.0 35 ..................................... TACTTAAACGCTGCTCAACGCTCACGCAACGCGGA 1108408 37 100.0 34 ..................................... CTTGCTGGCGGCATTGCGGTGCTGGCAAAGCGCT 1108479 37 100.0 34 ..................................... TTGCCGGGCTTGCGGCCGGTCTGCTGCTCGACCT 1108550 37 100.0 34 ..................................... GTCGTCGTGCACATGCTCACGCGCGCCGAGCGCG 1108621 37 100.0 34 ..................................... CTGCACCCTGACACGCAAGCCTTGGTGTGGGCTG 1108692 37 100.0 35 ..................................... ATGGCACCAGTTGTTGCCATTGGCCACCTTGGCGC 1108764 37 100.0 34 ..................................... TTTGCCGGCAGCGCGCCCGTCGCCGAGGGTGTGG 1108835 37 100.0 34 ..................................... TTCCAGCTCGGCGATGTAGCTGGCGAGTGCGCGG 1108906 37 100.0 35 ..................................... ACGCAGCACCTGCGGGCGGAAGGCGCGGCCCGTGA 1108978 37 100.0 34 ..................................... GGGTCAGGCGGTCGGCGGGATGGGGGGATCGATG 1109049 37 100.0 33 ..................................... TGCATCCACCCCGTGAGTGCACTGGTGATCGGC 1109119 37 100.0 33 ..................................... CGGCGGTTCGGCTGGCGTCAACCTGGGCCAGTT 1109189 37 100.0 33 ..................................... GACAAGATCGCCGAGCAAAGCCTCTCCACCCGC 1109259 37 100.0 34 ..................................... TGCGTGCTCGTCACCGGAGCGCGGAATGCAATGG 1109330 37 100.0 35 ..................................... TATGTGACCGGTGCCGGTGTGTCCGGCAACACAAC 1109402 37 100.0 34 ..................................... CTTGCCCGCGTGGCGCGCCCCGATGCCCCGGCCC 1109473 37 100.0 35 ..................................... ACGATGGTGCGGAATGGTGCGCCGGCGATGACGTT 1109545 37 100.0 34 ..................................... CTCTCCAACGAGGGCATGCCCCTGCCGCTCGACA 1109616 37 100.0 34 ..................................... GACGCTGGCTTTGCCGAAGGGCTGGGCAACTTGC 1109687 37 100.0 34 ..................................... GAGATCGCCGACCGCAAGGCGCGCGGCGAGTGGA 1109758 37 100.0 34 ..................................... TTCTGCCACCTCACCGACGCGCACAAGGTCACTG 1109829 37 100.0 34 ..................................... GTCAGGCGGTCGGTCATGGTGGGCTCATCGGGTT 1109900 37 100.0 33 ..................................... GGCTGGGGGCTCGGGTCTGCGCGCAGCACCGCC 1109970 37 100.0 33 ..................................... CGCTTAAACGCGTCGACGGCGGCGTCGAACGAC 1110040 37 100.0 34 ..................................... ACCTCACGCCTGGTGCTCATGCGCCCCAAGGCCG 1110111 37 100.0 34 ..................................... ATGTGTTCTCCGAGGTGAAGAGGGAGTGCAGACG 1110182 37 100.0 34 ..................................... AGCGAGTACTCCACGTCGCTGTCGAGGTACTTGT 1110253 37 100.0 33 ..................................... CAGCGCCACCATGTGCGCGTAGGTCGGCGCAGC 1110323 37 100.0 33 ..................................... GTCAGCCAGGCTGTGGGCATGGCCCATCGCGCG 1110393 37 100.0 34 ..................................... TCGACCACGCCGATCTGCTGGCGCGTGTCGTGGT 1110464 37 100.0 35 ..................................... AGCAGTGCCGCCAGTTGCTCGCGGCCGCCGACGGA 1110536 37 100.0 35 ..................................... CGCCCGCAGACGGTCCGCGCCGAGCTGGCCGACTG 1110608 37 100.0 34 ..................................... GAGCTGGCCTCGCACAGCGCCCGGAGACGCCAGT 1110679 37 100.0 35 ..................................... TCGACAATGTGTCGGCCGGCCTGCCGGCAGATGCG 1110751 37 100.0 34 ..................................... TGGGCGAACCCGAGCGCCTGTTCGCTGAGCGCGT 1110822 37 100.0 36 ..................................... GCTTCAACACCGACGGCACGGTGTCGACGCGCGACC 1110895 37 100.0 35 ..................................... ACCGACGGCCTCACCATCCCGCCCGCGGGCAGCCT 1110967 37 100.0 33 ..................................... ATCGTCGCCAATGAGCCGCGCTCTGCGACCGTT 1111037 37 100.0 33 ..................................... CGCGTCGCCTACGTCGAAACCGGCAAAGGCTCC 1111107 37 100.0 34 ..................................... CTTCGTAGGCCACGGCTTGACCAGGCTTGAAGTG 1111178 37 100.0 34 ..................................... GTCCTCACGACCGGAAACCGGGCAAATCCGGCAA 1111249 37 100.0 35 ..................................... AAGACCATGATCCTCCGCCCGGTCATCAAGGCGGT 1111321 37 100.0 34 ..................................... ACCGACATCTCGCGCTGGCGCGCGCCGTCCCGGT 1111392 37 100.0 35 ..................................... AAGCTCAACACCGGCACCGGGACGGGATCAGTGAC 1111464 37 100.0 36 ..................................... CTCGATGATCGCCACGAGCGGCGCAATGCTCGAGGG 1111537 37 100.0 34 ..................................... TGCGGGATGCCTTCGTTGGCCTTCAGGATCGCCG 1111608 37 100.0 35 ..................................... AGCACGTACCGCCCGGGCTGCTTCTCCCACACGAT 1111680 37 100.0 35 ..................................... TTCGTCATGAACCCGAACCGCAAGAACGCCGCAGG 1111752 37 100.0 35 ..................................... GATGCGGACCACCCGGAGGCGGGCGACCTGTTCGC 1111824 37 100.0 33 ..................................... TGCCGCTTGGACTCGGCGGCCTCGCGGTACTGC 1111894 37 100.0 40 ..................................... CACAACAAGCTGGGGCGGCTTTAAGCCTGTGCCTGTGGGC 1111971 37 100.0 35 ..................................... CGCATCTGGTCGCTGAAGCGCATGCCATCCAGGCT 1112043 37 100.0 35 ..................................... AGCAGGGGGACGCCCTCCATGAAGTCCCCGACGCT 1112115 37 100.0 33 ..................................... CGAAGTTGGCGGCGTTCACGTTGGTCATGCCCG 1112185 37 100.0 35 ..................................... AAACTCGCGCCGGATGAAGGGCAGGCCGAGTTCGA 1112257 37 100.0 34 ..................................... GGCTGAAAGTCCAGTTGCCGGTGTCATCGGCGGC 1112328 37 100.0 34 ..................................... TGTGGAGCGCCGCGGACTACACCGGCGCGTCGCC 1112399 37 100.0 33 ..................................... ACCAACAACGCCGCGGAAACCGCTGAAGCCACT 1112469 37 100.0 34 ..................................... CACTCCGACAAGACCGGTACCGACCGCACGCCCA 1112540 37 100.0 34 ..................................... AGCACGGCACTGCCTCTCCGCGCTCCGTAGGCGC 1112611 37 100.0 35 ..................................... CCTTTGTTGCCCAGGCGCTCGGCACCACCGTCGAA 1112683 37 100.0 34 ..................................... GCCGATGCGCTGGTGCGTGACGGCGGACTCGACG 1112754 37 100.0 33 ..................................... AGCAACGTCTGGGCGCCTTGCCGATGCAGCATC 1112824 37 100.0 35 ..................................... TTTCCGCCACTGTCGTCAGGCGCTGCGCCCATCGT 1112896 37 100.0 33 ..................................... AAGCTGGGCCTCTACCGTGGCCTGAATTTCGAC 1112966 37 100.0 35 ..................................... AACCTGTGGGTGGACCGCGGAATGGGGCGCCCAGC 1113038 37 100.0 36 ..................................... AGGCCGTAGCTGCTCTGCCGCCACGCCGGGCTCACC 1113111 37 100.0 34 ..................................... AGCTGTCGCTGAAGCCGTCGCTCACCAGCGACTC 1113182 37 100.0 33 ..................................... TCGATCAACAGGCCGATCGCGCCCGCGATGGCC 1113252 37 100.0 33 ..................................... TTCACCAACTACTCGTTCGATGCAGTGCACCTG 1113322 37 100.0 34 ..................................... AGTTCCGATTCGCTCACACGAACTGTATCCGTCG 1113393 37 100.0 38 ..................................... CTGCTGTCGCGCTGGGACATCGCGCGCGACAAGCCCAT 1113468 37 100.0 33 ..................................... ACACAGCAGATCGCGCGCGGCGTCCAAGAGTTC 1113538 37 100.0 35 ..................................... CGGCCGTCCCTCGGCCGCATCGCCTCGCTGGGGAC 1113610 37 97.3 0 .......T............................. | ========== ====== ====== ====== ===================================== ======================================== ================== 75 37 100.0 34 GCACCGCCCGCCTTCACCGGCGGGCGTGGGTTGAAAC # Left flank : TTCCTTATCCGGTGAAAGCGCCATGCTGGTGATCGTCTGCTACGACGTGAACACGGAAACACGCGAAGGCCGGCGCCGGCTGCGCCGTGTGGCCAAGCTCTGCGAAGCCACTGGCCAGAGGGTGCAGAAATCGGTTTTCGAATGCCAGATCGACCTCGCCCAGTTGGAAACGCTGGAGCGCAAGCTGCGCGCCGAAATCGAGGAGACGCAGGATTGCCTGCGCATCTACCGCCTCCCCGACACGCGCGGCGCGGAAGTTCGCGAGTACGGCCACTTCAAGGCGGTCGACTTTGAAGGGCCCCTGGTGTTGTGAGCGCCTCCCGCGCGAACCTGCAGCGCCGCGGTCCTCACCGTGAGGATCGCGCGGCGCGAAAAGCCAGTGATGACAGGCACCTGCGAGCTCAGGCGGCCATCACGCCACGTTGCAACCAGTCAGCGAGTCCATGGTTCGCGGACAACGGCAGAATTCGCCAGTTCCGCTCAGGCTTTGCCAGCGGGGG # Right flank : CCCGCCTCGTCGGCTTTCTTGGCGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCACCGGCGGGCGTGGGTTGAAACGTCCCAGGTCCAGCCGGTGAAGTCGATCGCCTCGGCACCGCCCGCCTTCACCGGCGGGCGTGGGTTGAAACATGCGCAAGGTGCAGGAGGCCTGCCCACTGAGCGGCACCGCCCGCCTTCACGGGCGGGCGTGGGTTGAAACCGTAGGGCGCGACGTCAGGGAAGACGCGCGGGCAGCACCGCCCGCCTTCACCGGCGGGCGTGGGTTGAAACATCGGTCATGCCGGCGTCGCGGGCGAACTTGAACGCACCGCCCGCCTTCGCCGGCGGGCGTGGGTTGAAACATGACGATGGTGCGGCGGCCCGTCATCAACGCACGCGATTGGCTCACGATGCCAATAAGCCATGCCCGACGATTGCCGGGCGGCAGTGCCCGTCTCAGAACGCGCTGTCCGCAGCGCGGCGAAGGTCTGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCACCGCCCGCCTTCACCGGCGGGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCACCGCCCGCCTTCACCGGCGGGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-16.50,-17.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1113765-1114014 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMFP01000003.1 Pelomonas sp. Root1444 contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 1113765 37 100.0 34 ..................................... ATGCGCAAGGTGCAGGAGGCCTGCCCACTGAGCG 1113836 37 97.3 34 .................G................... CGTAGGGCGCGACGTCAGGGAAGACGCGCGGGCA 1113907 37 100.0 34 ..................................... ATCGGTCATGCCGGCGTCGCGGGCGAACTTGAAC 1113978 37 97.3 0 ...............G..................... | ========== ====== ====== ====== ===================================== ================================== ================== 4 37 98.7 34 GCACCGCCCGCCTTCACCGGCGGGCGTGGGTTGAAAC # Left flank : TCACCGGCGGGCGTGGGTTGAAACTTCACCAACTACTCGTTCGATGCAGTGCACCTGGCACCGCCCGCCTTCACCGGCGGGCGTGGGTTGAAACAGTTCCGATTCGCTCACACGAACTGTATCCGTCGGCACCGCCCGCCTTCACCGGCGGGCGTGGGTTGAAACCTGCTGTCGCGCTGGGACATCGCGCGCGACAAGCCCATGCACCGCCCGCCTTCACCGGCGGGCGTGGGTTGAAACACACAGCAGATCGCGCGCGGCGTCCAAGAGTTCGCACCGCCCGCCTTCACCGGCGGGCGTGGGTTGAAACCGGCCGTCCCTCGGCCGCATCGCCTCGCTGGGGACGCACCGCTCGCCTTCACCGGCGGGCGTGGGTTGAAACCCGCCTCGTCGGCTTTCTTGGCGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCACCGGCGGGCGTGGGTTGAAACGTCCCAGGTCCAGCCGGTGAAGTCGATCGCCTCG # Right flank : CATGACGATGGTGCGGCGGCCCGTCATCAACGCACGCGATTGGCTCACGATGCCAATAAGCCATGCCCGACGATTGCCGGGCGGCAGTGCCCGTCTCAGAACGCGCTGTCCGCAGCGCGGCGAAGGTCTGCTGCCATGCTTGGCATGGAGGACTCCATCTCGTGCGCCAGGTGGCGCAAAGCAATCGCCTCGCGGAGCAGGCGACGCCGCTCGCCCCGGGCCGCGTGCGCGCGCTGGAACGCCTGCACCGCGTCTGTCGCACGGCCGATCCAGAACGCCAGGCGCGGGGTGAGAGGCTGAACAGGGACGAGCACTTCGACGTAGGTGGACATGATGGTTCTCCAAACTTTTACTGCCGGGCCTCCGATGGAGACCGATTCATGCAGCGGGATGCATGTTGCACCCAGGGTTAACCCTTTGTTGTGACGCAGATCAACCGGACGACATGGGAGGCCCGCAAGCCCATCGGCGTGACGAAGGTCGCCGTGGTCGGCCACCAC # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCACCGCCCGCCTTCACCGGCGGGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCACCGCCCGCCTTCACCGGCGGGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-16.50,-17.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //