Array 1 1269934-1269603 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDTU01000001.1 Piscirickettsia litoralis strain Y2 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1269933 28 100.0 32 ............................ GTTATCGTCAGTGAGCGTGAAGGACTCGAGGA 1269873 28 100.0 32 ............................ AATGGGAAATGTTCAATCTACACAAGACGGAA 1269813 28 100.0 32 ............................ GTTAAGAAGTTGTTTACGTAGTCTAGGTAGAG 1269753 28 100.0 32 ............................ ACGAAAATCATCAAGCTCATTCATGAACTCAG 1269693 28 100.0 32 ............................ CAGTTAAAACGCACTTGAAAGCGCCCCTTTTC TCA [1269684] 1269630 28 96.4 0 .....T...................... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 99.4 32 GTTAACTGCCGCACAGGCAGCTTAGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCTTAGAAAACAAGAAAAAGGTAAGAAAATGAGCTGGTC # Right flank : TGGGGAAGTTTTGAAAGGTCAGGGTGGTGGAGACGGCGGGAATCGAACCCGCGTCCGTAAATCCTCCACTCTCGGATCTACATGCTTAGTTCACCTATTATATTTAACTTAGTTTAGCCCGATGAACCTGGCACCACTTCGCGAGTCTGCTTAGGTTTTAGCGTTTAATGCACAGACACATTAAAGTCGCGAGCTTGTAAAAAGATGAACGTTGAAACCCTGGGTCTACAAGCGGACTCAGACAACGTCGATGTGCTGTTTCTTAGGCAGCTTTGACATCAGCAGCAACGACAGAGTCGTTAGCAGCTACAGTGATGTCAGCATCGTTGGCAGCTTTAGCTTCGCCAATTATAAAAGTAATATCTCTGATTAACGAGTGTAGATATCATCACTCGGCATGCCCCTTAAGTTTTGCAATCCACGTCGAAGCCATGTCGTCCCCTTAAGAAGTGCACTGATTATAGGGGAGAAAAAGCAATATTTCAAATCGTTTGTAAAGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1271701-1271073 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDTU01000001.1 Piscirickettsia litoralis strain Y2 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1271700 28 100.0 32 ............................ ACTCTTGCAAAAAGCCTCCGCTTCGCCTCTTT 1271640 28 100.0 32 ............................ GCATCAACCCAGAACGGATCACTGCCTTGAAC 1271580 28 100.0 32 ............................ ATCTAGACATTAAACCTTTAGTGTCTGCTTGG 1271520 28 100.0 32 ............................ AACGAAAAGAGCAGATGTTAAAAGGCGAGGTG 1271460 28 100.0 32 ............................ TTTACGCAGCTAACAACCTGTCTAACAAGCTA 1271400 28 100.0 32 ............................ TACAGTGTAATACCCTTCACCAGCACCAACGT 1271340 28 100.0 32 ............................ CACATCGGTAAAGATAGGCTCAATATTAATAC 1271280 28 100.0 32 ............................ AGTAACGCTGGTTCAACCACCCTTGTGCATAC 1271220 28 100.0 32 ............................ ACTGAAACTTGACCTTCCTGCGCTGCCTCTTT 1271160 28 100.0 32 ............................ AATGATGTGGCCGGTGCGATTAACAACTTCTA 1271100 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTAACTGCCGCATAGGCAGCTTAGAAA # Left flank : CTAGAAAAGCTTATCTCCCAGAGACTGTTATCTCGACTGAGTGATTATTTGCACATGACGAGAATTCGTGAAGTACCTTCAGGTGTAACGGAATATGTCAGGTTTAAAAGAGTTCAGTCAAAATCAAGTAAATTTCGAAGAGTGAGAAGAAAGGCGAGGAAGGCATCTATCTCTTTTGAGGAGGCGCTGGACAGTTACCAAGGTCAAGATGATGTTATGCTTAGTGGGTTTCCATTTATTAAAATGAAGAGCGCTAGTTCTAATCAGGATTTTCTTTTGTTCGTGCGCCGAGAAACCTCAAAAGAACTCATTGATAAAGGCTTTAACTCATATGGACTAAGTTCTGAGTCAACTTTACCGATGTTTTGACCTTTATTTTTATAGCTCTTTAAAAAATCAAATAAAACAACAGGTTATATTGTTGAGGGGGAATTGTTGGTTATTTCGTGAAACCTAACGACAACTATTGACACTACTTGCGTGTAGCGTTTAAATCTACT # Right flank : AGCCAACACCCCGGTGTTAGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //