Array 1 6881-4601 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFQV010000006.1 Streptococcus suis strain AKJ24 AKJ24_Scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6880 36 100.0 30 .................................... AGTGTCACCGCTAAACGTTATGAATGTGAC 6814 36 100.0 30 .................................... AGTGACTTTTCAAGCACTCCCTTAATAGCT 6748 36 100.0 30 .................................... CCCGTCAACGCTTCCAGCTTGACACGGTTT 6682 36 100.0 30 .................................... CTCTGACAAATTATCGTAGTTTATAACTTT 6616 36 100.0 30 .................................... TCGAGTAACAACAGTTGAGAATGTAGTTGA 6550 36 100.0 30 .................................... AGCAACCAGACGGAAGATTGAAACTATATC 6484 36 100.0 30 .................................... AATGCACTGGCACAGATATTCCAGAAGAAA 6418 36 100.0 30 .................................... TGTATTTCAAGGGCTTTCTGTTACTGGTTA 6352 36 100.0 30 .................................... CAAACTTACCATGATTTTCTTGTAATGCGT 6286 36 100.0 30 .................................... ACGAGCATTACCAGGCTAACTATCTTACCT 6220 36 100.0 30 .................................... TTACGATTGGCATAGTTATTATCAATATAA 6154 36 100.0 30 .................................... ATAAATATTAGAGCGTGGGCAGATTCAGTT 6088 36 100.0 30 .................................... ATATAACCGAATGAATGTTTGTTAAAACCT 6022 36 100.0 30 .................................... TTAAAACAAGGAAAAAAAGGAGAATAATAT 5956 36 100.0 30 .................................... AGAAGAGGCAGCTCATGTAGCAGACACTTA 5890 36 100.0 30 .................................... CTTAAAAACTAAATTTTTTCTAATAGCCCA 5824 36 100.0 30 .................................... CTCAGAGACGAGATTATTGCCAGAGATGGT 5758 36 100.0 30 .................................... AGTCAGGGAAGAAGTTATTCTTAGAGACCT 5692 36 100.0 30 .................................... AAGATACGCTCTTTATTAACCCAAGCTTTT 5626 36 100.0 30 .................................... TTATAAACGCATGAAAACTCAAGCTCTTAA 5560 36 100.0 30 .................................... GTCTGGCATGGATATCGATGGTGATGTTAT 5494 36 100.0 30 .................................... TTCTTACCTATCTTGTTGATCTTATGAACA 5428 36 100.0 30 .................................... TCTTTCGTTTTAAATTAGAACCTTCTAGCT 5362 36 100.0 30 .................................... AAACAAAGAATTTAAAACATCGTTGAACAT 5296 36 100.0 30 .................................... CATTGCTTGCTCAGCTTCAGCTCTCAATGC 5230 36 100.0 30 .................................... TTAATTTGTGTTGTTGTATTTGTTTGCCAC 5164 36 100.0 30 .................................... TCGCCACTAGAACGTAAACATCGTTATTAA 5098 36 100.0 30 .................................... TGAATTTCAATGTTGAAATAACGATCGCCT 5032 36 100.0 30 .................................... CGTAAAAGGCTTGACGGTTTCGGTCTACCG 4966 36 100.0 30 .................................... TTCTCCTATGGATTTTAGAAATTTTAAGTG 4900 36 100.0 30 .................................... AAATGACGCAAAAGTATATAAGAATCTTAG 4834 36 100.0 30 .................................... CGTTCATTTTAGTTCCATGCTTTGCGGTAT 4768 36 100.0 30 .................................... CGTTCATTTTAGTTCCATGCTTTGCGGTAT 4702 36 100.0 30 .................................... CGCGTCTTAATTTCCCATCGTCCACGCTCT 4636 35 88.9 0 .........................A..A-.....G | T [4603] ========== ====== ====== ====== ==================================== ============================== ================== 35 36 99.7 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTTTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTCGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACAGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAATTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : CAGTAAGTTTATAAAGGAGGGGAGTAATTGGATGTCAAAACTGTTATTTTTTAATACTTCTATTTCTAACAGTAGTAGTGAATATTGTAACTTTAATTATCAAAAAAATCACTAAAGAGATCGAAAGAAATAAGTGGGGATGAAATTGATAAAGAGCTTAATTTGATAGGTCTTCCTGATTAAATTCTACTTTATATCACTGTTTTAATTTTTTCTAGTTTTTACGATAGCCTAGAAAATACTGTCGAAATTAATTCCCCTCCATTTTCCTCCAAGATTTCTAACTCACCCTTGTACCATCCCCCTTTTCCATGATATACTATATGTAATCGTTTTATTTCAAAGGAGACAAAAATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTTGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCGGAAGAGGGCTTGCAGATCAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //