Array 1 210003-209135 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031554.1 Pasteurella multocida strain BS168 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 210002 28 100.0 32 ............................ ATTAGCTGAAGACCGATTTATTAGAAATACAG 209942 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 209882 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 209822 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 209762 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 209702 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 209642 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 209582 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 209522 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 209462 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 209402 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 209342 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 209282 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 209222 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 209162 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.5 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATACTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 766872-765525 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031554.1 Pasteurella multocida strain BS168 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 766871 28 100.0 32 ............................ TTACCTTCCGTCATTGTTGAGCCTCCGCTAGT 766811 28 100.0 32 ............................ GCTACAAGCAAGCGACGATAGTTTTAATTTTA 766751 28 100.0 32 ............................ AAAGCCTATGAACACACAACCCTTGCACAAGT 766691 28 100.0 32 ............................ TTATCGCGGAAGTCAGTCGCCATAATGGCGTA 766631 28 100.0 32 ............................ ATTTCAGGTGAGCAGTGGATGATTATCCCGAG 766571 28 100.0 32 ............................ ATGTGTCTAAATCGGGGTAGATTTCCGCGAGC 766511 28 100.0 32 ............................ AAAATCTCTGGAATTTGTCGCATATTGCCTTT 766451 28 100.0 32 ............................ GTTGCAAGGTTGTAAGCTGTCCCCGCGTATTC 766391 28 100.0 32 ............................ ATGAACACATGATCACTTCTTGATGGATCAAA 766331 28 100.0 32 ............................ ATCAACGGGAGCGTAAGCGAAATGAAGAAACG 766271 28 100.0 32 ............................ AAGTGTCCGCGCTCACGTTAATCCCCGTAAGC 766211 28 100.0 32 ............................ AAGCCACAGCGCAGATGAGCACGTCATCACGT 766151 28 100.0 32 ............................ GATCCAAGCGTTACAAGTGAATCGTGGCTCTT 766091 28 100.0 32 ............................ AAGCACTATGCCGATAGCTCCCCAAAAGTCAT 766031 28 100.0 32 ............................ TAGCAATGGCAACAGCCTTTTTTATTATAGTT 765971 28 100.0 32 ............................ TCGCCTTTTGTCGCAAACCATTTGCGCACCCG 765911 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 765851 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 765791 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 765731 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 765671 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 765611 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 765551 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 23 28 98.6 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //