Array 1 214913-212381 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWIM01000017.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_69 contig0016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 214912 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 214851 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 214790 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 214729 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 214668 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 214607 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 214546 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 214485 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 214424 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 214363 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 214302 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 214241 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 214180 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 214119 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 214058 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 213997 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 213936 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 213875 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 213814 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 213753 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 213692 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 213631 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 213570 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 213509 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 213448 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 213387 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 213326 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 213265 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 213204 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 213143 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 213082 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 213021 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 212960 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 212899 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 212838 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 212777 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 212716 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 212655 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 212594 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 212533 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 212471 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 212410 29 96.6 0 ............T................ | A [212383] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 232822-231536 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWIM01000017.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_69 contig0016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================== ================== 232821 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 232760 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 232699 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 232638 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 232577 29 100.0 70 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCCGTGTTCCCCGCGCCAGNNNNNNNNNNNNNNNNNNNNNN 232478 29 62.1 32 NNNNNNNNNNN.................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 232417 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 232356 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 232295 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 232234 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 232173 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 232112 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 232051 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 231990 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 231929 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 231868 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 231807 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 231746 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 231685 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 231624 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 231563 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ====================================================================== ================== 21 29 97.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //