Array 1 5143-6696 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAEJ01000022.1 Neisseria meningitidis strain Neisseria meningitidis isolate R964, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5143 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 5209 36 100.0 30 .................................... TTCTATTATAAAAGCTGCCTGACTTACTCG 5275 36 100.0 30 .................................... TTCTATTATAAAAGCTGCCTGACTTACTCG 5341 36 100.0 30 .................................... TTCTATTATAAAAGCTGCCTGACTTACTCG 5407 36 100.0 30 .................................... TTCTATTATAAAAGCTGCCTGACTTACTCG 5473 36 100.0 30 .................................... GGCGGATGGCATACGGCGTGCCTTTTCGGT 5539 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 5605 36 100.0 30 .................................... CCGTCACTACACGAACTGGCGGACTTCTTG 5671 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 5737 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 5803 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA 5869 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 5935 36 100.0 30 .................................... AAGCAAATCATTTTCATAGTCAGCAGCTTC 6001 36 97.2 30 ......................T............. ACGTGAGTTTGTCTATGAGTTCGACGGCGT 6067 36 100.0 30 .................................... CTTTCACTTCAGTAATGGCTTCGGCATATA 6133 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTTCTATACA 6199 36 100.0 30 .................................... GTGGGAGTTCGTCTATGAATTCGATGGCGT 6265 36 100.0 30 .................................... TTTGCTGCCCGACAATGCGCGTCCGCAGAT 6331 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 6397 36 100.0 30 .................................... TTCCAAAGTTTTAATTTATATTATTTTAGT 6463 36 97.2 30 ............................A....... CAGAAGATGATAACTGTGCTGGGGGTGCGT 6529 36 100.0 30 .................................... ACGCAATAACGGCGAGTTTACGCATCAATG 6595 36 100.0 30 .................................... TAACGATTGAAAGTGAGTATGTATTAAGTA 6661 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.5 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTGTCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //