Array 1 49167-48466 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOXV01000142.1 Salmonella enterica subsp. enterica serovar Stanley str. ATCC 7308 SEES7308_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49166 29 100.0 32 ............................. GCGGGACCTCCAGCGCCACTGCTAATATTCGT 49105 29 96.6 32 ............................T GTCCCGTACGAGATACTCCAGCGCCTGCCCGC 49044 29 100.0 32 ............................. TGATTATTCGCGAATTGAAGAGGCATTCAATG 48983 29 100.0 32 ............................. TTGTTTTGTTTATTTAATTAAATCATTATCAG 48922 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 48861 29 100.0 32 ............................. AGTATTGCAACTACGGCTGACGCGCTGATCGA 48800 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 48739 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 48678 29 100.0 32 ............................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 48617 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 48556 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 48495 29 93.1 0 A...........T................ | A [48468] ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 66537-65289 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOXV01000142.1 Salmonella enterica subsp. enterica serovar Stanley str. ATCC 7308 SEES7308_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66536 29 100.0 32 ............................. TTGTCATGCGGCGCTGCGAGCGTGCGGCCTTT 66475 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCGCACGCCCTTA 66414 29 100.0 32 ............................. CCTGACTGCCGCCGGTGTAGGTGGCGAATGCA 66353 29 100.0 32 ............................. TGAAACGTGGCCCCGCGTGTGTTTTGGTTCGT 66292 29 100.0 32 ............................. AAAACGGATTCTGGTGGAGTAAATCAAATCAG 66231 29 100.0 32 ............................. CAGATCGGCCTCTGATTTAGACAATTTCAGTT 66170 29 100.0 32 ............................. CGCCGCGAGGTGATCGAGATGCTTGAGGGTAT 66109 29 100.0 32 ............................. GTATCTCGAAGAGCGTCAAAAAAGCCGGAATG 66048 29 100.0 32 ............................. GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 65987 29 100.0 32 ............................. TCGAGTTCTGGCATGTCAGACTGACGTATCGC 65926 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 65865 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 65804 29 100.0 32 ............................. CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 65743 29 96.6 32 .............T............... GATTGTTCAGATTGGGAATTTGACCAACGCCC 65682 29 96.6 32 .............T............... GTTACTGTATTATCTCTCGCATAGACCCGGCA 65621 29 96.6 32 .............T............... CCTGAGGAGATATTCACCTTCCTGCATTTCAT 65560 29 96.6 32 .............T............... TCTGGTGGCTGCCTCATATTGTTGCGCATCTA 65499 29 96.6 32 .............T............... AAAAAAATGCGATCGGTACTCAACCCGGCCAC 65438 29 100.0 32 ............................. CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 65377 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 65316 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTAGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //