Array 1 18141-16589 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTWB01000026.1 Enterococcus faecalis strain CVM N59599F N59599F_S13_L001_R1_001_contig_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18140 36 100.0 30 .................................... TTGAAACACATAATCATTAACCGCTTTTTG 18074 36 100.0 30 .................................... AAAATTCTTCTAACGTTTGCGCTGAAATAT 18008 36 97.2 30 ...............................T.... TGTTTATTCTGCGGTTTCTCGCCAAATTAA 17942 36 100.0 30 .................................... CACTTCATATACCTTCTAAACGAGTTATTA 17876 36 100.0 30 .................................... GGATGTACCAGTTATTCTTGGTCTTTCAAA 17810 36 100.0 30 .................................... TGTTCCTCTTGATGGTGCTGACGGCAACCA 17744 36 100.0 29 .................................... TGTCTCTTTGATGGCTTCCTTTTTAACCA 17679 36 100.0 30 .................................... AAAAACCAGATTTAGAAACTATTAAAGATA 17613 36 100.0 30 .................................... GCTTTTTCTCCTGCAAACTCTTCGATCTGA 17547 36 100.0 30 .................................... CAACTAGTTCAGTAATTTCGCCTTCACTTT 17481 36 100.0 30 .................................... AAATCACGAGAAAGAACGGCTTCTTAGAGA 17415 36 100.0 29 .................................... TTTTTCTCTTTTTCGGTTGTTAGCTCTGG 17350 36 100.0 30 .................................... AAACGATACCTTATACCATTGAATATAATG 17284 36 100.0 30 .................................... CGTTCCATTGCTTTAAACTAGTATCGGAAG 17218 36 100.0 30 .................................... AGTTCGCTTATTCCCATCATGGCACAGACC 17152 36 100.0 30 .................................... AAGCTTTTTTATAGGCTTTTTCTGTACCAT 17086 36 100.0 30 .................................... TTACTATCTCTCTGCTAGTTGTACCAGTCC 17020 36 100.0 30 .................................... AAAACAAGTAAAAGACGTGGGTAATCAGTT 16954 36 100.0 30 .................................... TGGAACATGAGAGTGGTTTAAACCCTGCTA 16888 36 100.0 30 .................................... GCACCTAGAACGACGTCAATCGGTTGGTTG 16822 36 100.0 30 .................................... GCAAAATGCCCGCTGCTATCTATTCAACGA 16756 36 100.0 30 .................................... TAAAGATGGCAATCCTAAGCCAAGGCTTGA 16690 36 100.0 30 .................................... ACGTGTCGTCGTAAGTTGTTGCAGTCCATG 16624 36 97.2 0 ..........................C......... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.8 30 GTTTTTGTACTCTCAATAATTTCTTATCAGTAAAAC # Left flank : ATTTATTATCTCTTTCAGCAGCTAAAGAAATTGGCTCAAGAAACAAAGCAGTTGAAGTTTTTTATTTTTAGTAATAGAAGCTTGCCTTTACCGTATACGGAGGAAGATGTTGAGAAAACGATTTTGTTATATGATAAGTATCAGCAGTTGCCAGTTTTTGATGTTTTTCGTCAAAGTATTGAGCGACATTATCCAGATCAACTCTCTTGGACAAATCAACAACTAATTGATGCTTTTTATCGAGTCTGTCATTTTGTTGGTGATCAGTATACAAAAAATTATCTTTTACCTAAAGATATGATATTATTAAAATTGTTGAAGGAATTGTTAGACGACAATAGTGAGTGTGTCGAGACGTCGATGGAAAAGCTCACTGTATTGGAAGAACAATATTTTCGCGAACGGTTATTGCGGAAAGAGTGAGTCTGGAATTTTAACCGCGTAAAGTTATATTTTTTATCAAAAGGATTATTAATGAGATTTCAAATTTTAAATTTGAG # Right flank : AATAAGGAAGTAGGTTGGATGTACAAACTCGCTTTTATACCCCAAATAATTTTCAAAAAAGCCATCCCCACTAAATGTTTAAATATAGTCATCTTTCTAGCATAATTATTTGTATCTGAAGCAACAGCCAAATTGGCTTCTTCAGATACTTTTTGTTATTTAATTTAAGAGTTTTCTCAGTTGTACCAACAAATTGATAACTTATAATTTTCAAGTCCTACATATAATGGTAAAATAGAATAGATTGAAATTAATTGGAGGAATAATGAATCGATGAAAAAAAGATTGCTATTATTTATTGGTTTGGCAAGTATACTTACTTTGACAGGATGTGCAAAATGGATTGATCGTGGTGAATCCATCACAGCGGTAGGCTCATCAGCTTTACAACCATTAGTAGAGACAGCGAGTGAGGAATATCAAAGCCAAAATCCGGGAAGATTTATTAATGTCCAAGGTGGCGGAAGCGGAACAGGTCTGAGTCAAGTCCAATCTGGCGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAATAATTTCTTATCAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 13234-13402 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTWB01000085.1 Enterococcus faecalis strain CVM N59599F N59599F_S13_L001_R1_001_contig_85, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 13234 37 100.0 29 ..................................... TTAAATTTTACATCAACAAGCCAACCGTT 13300 37 100.0 29 ..................................... ACTTACAAAAGACTGTGATTTACGTTATA 13366 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ============================= ================== 3 37 99.1 30 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACG # Left flank : TGTATATCCTCATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAGGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTTGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACTTTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTATAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAAAAAGTTTGGTATAATAAACGTGAAGAAAAAAATTAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGACTACGGAATCATGGAGAAAAAATAATTCTCCGAG # Right flank : AAACTTTTTTGATTTGGCTTTTTCTCCCCTGTTTTAGAGCCATGTTGTTAAAAAACAAACTATCACCTCAAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCAATTTTCGAAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAACGGGAAGAAATCTTGGTAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //