Array 1 22638-23927 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABALF010000012.1 Neisseria meningitidis strain 108092 NODE_12_length_66614_cov_36.614516, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 22638 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 22704 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 22770 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 22836 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 22902 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 22968 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 23034 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 23100 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 23166 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 23232 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 23298 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 23364 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 23430 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 23496 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 23562 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 23628 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 23694 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 23760 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 23826 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 23892 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //