Array 1 103306-102149 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDCL01000090.1 Lactiplantibacillus pentosus strain IG8 NODE_234_length_520555_cov_208.507523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 103305 36 100.0 30 .................................... ACACCTTGCTATAATTGCGCGGACTCGTGC 103239 36 100.0 30 .................................... CCGATTATAAAGAATTTGGCGCGTGGAAGC 103173 36 100.0 30 .................................... AGAATCTGGTGTTACTGAATCAGAGGCCAA 103107 36 100.0 30 .................................... AAGCCAACAGTTATCATCGAGGTAAGATTT 103041 36 100.0 30 .................................... TTGGTGTGTTGACATTCCATAGGAACAAGC 102975 36 100.0 30 .................................... TGGTGTTGACCCACGGGCGGTTATCCAACT 102909 36 100.0 30 .................................... GCGACAAAAGTACGACCGCCGAAAAGACGA 102843 36 100.0 30 .................................... TTCTGGACTTAGAACGCCCATCAACCAAGC 102777 36 100.0 29 .................................... TATCTCATGTGATCTAGCGACTCACTACT 102712 36 100.0 30 .................................... TGATTACCTTGCTGAAAGCCAACCGTATTT 102646 36 100.0 30 .................................... ACTATTAAGCGGCTATGGATTAATAGTTTA 102580 36 100.0 30 .................................... GCTATTGGCTATCTGATTTGGGTATTCAAG 102514 36 100.0 30 .................................... TAACAGGCATCACACCCGTCCGGTGGTTTA 102448 36 100.0 30 .................................... AAACGTCTTTGGCATAGCCATTCATTGGCT 102382 36 100.0 30 .................................... TAGATTCAGAGAAAGAATTAGAACCAGAGC 102316 36 100.0 30 .................................... AAACCATACCATTAGAACCAACAACACAAG 102250 36 97.2 30 ..........................T......... TGATGGTTGGTCCTAATCCGGCAATTGCAG 102184 36 88.9 0 ........................T..AG.....G. | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.2 30 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Left flank : CAGTCGATTTAAACCGTTTGTTTATGAAGAAGATACAGGCCCAGATTATTAAGTTAATGGCCGATGAACAACAAGTAGCGGTCTTGGACCAAAGCCGATCCATGATTGCCAAAGTGATGGAAGCAAGTTTTCTATTGGATCTGCCACTAGATGTAGAGGAAGCGCCGGGCCTAGAACAAGCTTTGAAGTTTGCTGGAATTCACTTTCCCACGGATTTAACGCATAATCCTAGTGCAGTTTTAGAAGCGCTTGTTCAAACTCATGTTGAGCTAGGACTCAAGCAATGCCCTGTAATGACCAATGTCAGCCACTATTTGAACCCGGAACAATGGGCCGTTTTTGAACAGCAAGTGGCAGATTTAGACATCACGGTTATTATCATTGAATACTCAGAAATGAATCGGATGGAAAAGTTCAAGAATTGCTGTTATTATTATGTTGACGAGGATTTAGTAGACTGGCGTGATATGAATTAATTAGTGGATTATGTGAGAATGCCG # Right flank : ACTTTTCTTAGTATGTATTTGTACGCGCCTAGTCAAAGAAAGTCCGTTGTTAGATCTATATTTTAATCCTAGGGATATTTGACCGGGGGTCGCTAAGGGCTTAGCTCATACGAGTAAGATCAGATTGTCACTAGGTGGACGATAAATTCTTTCTTTGAGAAAAAGGTTTGGCATCTTTCTCGATAATCGATGTCTTCTGCAATGACATCTATGCTTAGGCGCATACAGGGAGATGTTCATAATGACAGTAAAAGTACAAAAACAGGGTCATTCGCTAATGATTCCGATACCAACGGATTTTCATGTTATGGAGAACGCAGAATACCAGCCGGTTATGGATGATGACAACGGAATCTTATCGTTTATCCCAGTGCATAAGAATATCTTTGAACAAAATCCTGACTATGATTTCCAAGCCGCACTCAAAGAAATGAGTTTACCCGATAATGGGAAACTGGTTGGGAAAGAAAACGTTTGGAAATGAAGTAGAAATAGCATAG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 9333-10142 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDCL01000009.1 Lactiplantibacillus pentosus strain IG8 NODE_10_length_72966_cov_124.327782, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 9333 28 100.0 33 ............................ TCACACTGGACAACAACCGATTATCTCAGTTAA 9394 28 100.0 33 ............................ TCACACTGGACAACAACCGATTATCTCAGTTAA 9455 28 100.0 33 ............................ CTTGCGAACGATGACGACGAAAAATAGGCCGCG 9516 28 100.0 30 ............................ GTCAACGTTAGCTTTTACCTTTGTCTACAA 9574 28 100.0 33 ............................ TGCGAAATGTTTATCCGACAATTTGGAATAATG 9635 28 100.0 33 ............................ TCAGACGCCGTGACGGCTTAGAATCAACGTAGT 9696 28 100.0 33 ............................ TGATAGTCCGGAGACGGGCAACAAAGAAATGGT 9757 28 82.1 33 .....................AAC.GA. CATTGCACATGTGGCCAAAACGTCGACGCCGTA 9818 28 85.7 35 ...............A..A..A...C.. TTAACGAAACCGTATTCTGCTGATTTGTCCTGGCA 9881 27 89.3 34 ...........A...A.-.......... TTAACACGCCGGTAGTCCCGTTTTTGGGGGATTG 9942 28 89.3 33 ......T........A.....C...... CATGACTGCGCACTATACTGAGTCAGCCCGACT 10003 28 78.6 33 ..T.....T......A.A..A.....T. GAGGTGCACTCTCGTGAGAAGCGTAGACGCTAG 10064 28 85.7 23 ......TT...........A...C.... TCGCTGAATCGATATCCACCATT Deletion [10115] 10115 27 78.6 0 T.A............A......A.-..T | C [10136] ========== ====== ====== ====== ============================ =================================== ================== 14 28 92.1 32 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : TATTAGACTGCCGGGGTATTTATAATTCATTGCGCACTAATTTTCGCCACAACGCTAGTAGCAGGAAAACTATTGAAAATCGCTTATCCGGCGTGAAATATATGGCTAGTTTGATAAGCTGGTATATATCCATCTTTAAAATCAGAGTAATACCGGATGCTCCCCCCAAAAAATATTCGTTAGTTATTCATTACTACAAACGCTCAATCAGTAAGACCGATTAATTTGCGGGTAGCAAGCTATTGGATGGATTTTTTAAAATTCCGGATATAGGTCAAACATTCACGCCTATTAAACGTCGTTATAATCATGTATATCTTATATTAACATTTAGAAATCAGAAAATCATCTACAGATTTGTTGCGTTTCATTGCAGACATTCATCTTGCTTGAAATCCCAGTTTCTTGTATAGTCCTAGTTGTAGATGTCAATTCAGCAAGTTGATGTAAATTTTGGATTTACTGATTTCATATTGTTGATATGACGGGATTTGTTTAGT # Right flank : TTGTACCGATTCATGACATAATCAGCATTGCTATTGTCTCTAACACATACAGGACTATTTCGGCATTTATACAGAGCGATGAACAGCATTATTTCATCAACAGGGCAATTTAACTTCTATGAGAACCAATGGCTAAAATTTTAAGTTCACACCACCAATCTTCCTTATGAATCAAACTTCCATTACACAAATAGTGTATCTCTCAGATGTGTTCTAAATTTTTAACTTTTCTACCTTACTCAATGCCTGAGCTAATGCCAACGTCGCCCGATCATCTTCTAGCGCATGATGTGGTTTTAAATTTTCAATTTCGTATGCTGACAGTACTGTCGCGAGTCGATAGTTATCTAGAAACGCATTGGTACGCTTCACAATTGGCATCAAATCAATGGGTTGACTTCTTAACGCTTCCAAATTATTGCTGATAAACGCCTGCTTTAAGAAGGCCTCATCAAAATGAAAATTATATCCCACGATTGCGCAATCACCTATGAAAGCAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-27] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12761-13155 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDCL01000009.1 Lactiplantibacillus pentosus strain IG8 NODE_10_length_72966_cov_124.327782, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 12761 28 100.0 33 ............................ CAACGGTATCACATACGTTAAAGATACGCCATT 12822 28 100.0 33 ............................ CAACGGTATCACATACGTTAAAGATACGCCATT 12883 28 100.0 33 ............................ TAAGGAGGTATTCCAGATGTACGCAGTTAAGAC 12944 28 96.4 34 .............G.............. TGGGAAGGTACTTCGGAAGATGCTGATCCGATTT 13006 28 89.3 33 ..A.........C..A............ TATGAATTGGTACAACCACGACGAAATTCCATT 13067 28 89.3 33 ..A.........C..A............ TGGATTGATTAGATCTAGAGATTCATTAGTTAA 13128 28 78.6 0 ..A.......T.C..A..........TT | ========== ====== ====== ====== ============================ ================================== ================== 7 28 93.4 33 CTGTTCCCCGCGTATGCGGGGGTGATCC # Left flank : AATTATTTGTGCGTTGCTGATTGAAAGTAGCTTTTTGCCTGCAAATTTAATGCGTATTTAAGCTTCACAATTATTAAGCGCTTACATTTTATTAAGAACATTGCTGACAATCCTGAATTATACTGACAAGAAATCATCGACTTTCATCCGTATATTTTCGTCAGAACCCTAAACTGTTTGTAAACGCTCCCGACTTTTAAATATAATTCCCCTACATTATCATACTGGCTATTCATCAACAATTCGCTTTATGTTATCCCACTTACTGGTTGAATTATTTCTGATTCTATACTTCTAATATTAGCATTCAGTGTTTGAATATACATCTATTTTCGGAAGGACTTTGATGGATTTTTGATAAATTATGACGACTAGTTTGTGTCAAGACAGTCTGATATGTCCAGTCTTGGAGTTTCCCTATAGTTGCTTTCAACGATCAAGTTAATGTAAAATGATACTTAGCCAATTTTGGATTGTTGATTTACCGGGATTTGTTTAGT # Right flank : TTTATACAGTTTTTAGGAGGGCAAGGATAATGGTTGAAATTATCGCGCATGTTTTAATACCAACCAATCGAGGATTTTTGATTTTACAGCGTACCCGAAAAGAATACGGCAATAAAAATGTATACCCTGGATACTGGGATATTCCTGGTGGTTTAGCCATCAATAATGAGATTCCAAGAGAAACAGCAATTCGGGAATGTATGGAAGAAACTGGGTTAAAGGTAAAAATTAGCAGAATTATCTGGGAAGATTCAGTCCTTGATAAGGACAAAAATCACGTGTTTACAAGATTAGTTTATCTGGCACATGAGATATCAGCTGATCAGAAAATTTATCTAAATCGAGAAGAACATTCTGAATTTGTTTTTGTAAATTCACGGCAAATTTTGAGTAAAAGAAAAGTCATACCATATTTAGAGAAAGTCTTGTTACAGTTTCTATAGATAATGAGAACTGTACCGCGTGACCTTTACGCTTGAAAGTGCAAAGAAATAATTTGT # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2993-2477 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDCL01000096.1 Lactiplantibacillus pentosus strain IG8 NODE_298_length_356971_cov_132.025375, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2992 28 100.0 33 ............................ CGGTGAAACTGATGAGTATACTTATTGGATGCA 2931 28 96.4 33 ..........T................. CAAGTAACCGTTAGGAACTGCTTTAATACGTTG 2870 28 96.4 33 ..........T................. TGTGTTAACACTCATTCTTCACCCTCCATTGAC 2809 28 100.0 33 ............................ TCACCTTCCTAAAACGGCATGTCGGCGTCACTG 2748 28 96.4 33 .....................T...... TCACTCATCCAATCACCACCAGTCGTAGGTTGC 2687 28 100.0 33 ............................ AGTGACGCCGACTACTGCAGCGACTACAGGAAT 2626 28 96.4 33 ......T..................... TTATACCACACATGCAGGCGTTTCAAGTGTCTA 2565 28 100.0 33 ............................ CGGTCATAGATTAGTGACCACATATACAGGGCA 2504 28 92.9 0 .................A...A...... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 97.6 33 CTGTTCCCCGCGTATGCGGGGGTGATCC # Left flank : ATCGCCTGCTACAACAAGTCGGCGCACAAGTTGTGGCCCAGACGGCGATTCTGGCAGAAGGTGCAGCTGGCACACGAACAGACATTGAATTTTTGGCGAAATTGCCACTGTTTGATGGAAATAACTCAGAATAATATAACTAGTCGTAGTGAACCGCGCCGCAGAAACAGATTTAACGGTAATTTTGTAGCCATTTTTGGCTTTATCAGTATTGTATGACCATTTAGACCGGTTAATTATAAATTCGTTTATACGGCAATTTTGAGCCGAATTCGAGCGATTCGCGAAATCTTGAGAAGCAATCATTTTTCAATGGCAATGCTAATTCAACTAAAATGATAATCACGCCATACTTTCATGGAAGATATTTTAGACAATTGACCGTCATCTACTAATGAATCTACTTGCAATGACCTGTCAGTCTGGTATGCTAAATCCAAGTTAATGTAAAACCTCAATTTTGCAATTTTGGATTGTTGATTTGACGGGATTTGTTTAGT # Right flank : TAATAAAGCCTAAAGTAAGAAAAAGTAACATGCAAATCACTCTAAATTTCTTACGCATTGAAATATTTAGTAAGCGGTTATCATCCATAGAAACATAAGACCATCAACAAAAGTTTTAGCGCATCAAAAAAATCACATCGCAATGGAAAATGCAGATGTGATCTTTCTGATTGTTCGATAGTTTTTTCGCTGTTGAATCCGCTTATCATTAATACGATGCTCTGTTGAGGCGTAAAAGTAGTACATCTTCAATCCAAATATCCAACAATTTCAACTATGCTATCAATATCAACAAACAATGGATACGTCTCAGGTATCATCATTGCTTGCTCATCATCATAGTTATAGTGTAAATATCTAAAATTATAATGCGTATAAAATTCCAAGGCGTCTGGCAGTGAGCTAACGACTATTCCTATAAGACCGATGTTAAAAACGTGCCTCATCTTAATGACAGTTCTGAAAATATCAAGAATCATGCTCGCTCCAATATGCTTGGC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //