Array 1 95812-97425 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYRK01000014.1 Salmonella enterica strain CVM 43793 43793_contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95812 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 95873 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 95934 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 95995 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 96056 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 96117 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 96178 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 96239 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 96300 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 96361 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 96422 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 96483 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 96544 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 96605 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 96666 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 96727 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 96788 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 96849 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 96910 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 96971 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 97032 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 97093 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 97154 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 97215 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 97276 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 97337 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 97398 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 113558-114197 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYRK01000014.1 Salmonella enterica strain CVM 43793 43793_contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113558 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 113619 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 113680 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 113741 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 113802 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 113863 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 113924 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 113985 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 114046 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 114107 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 114168 29 96.6 0 A............................ | A [114194] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //