Array 1 14620-11295 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWLT01000001.1 Salmonella enterica subsp. enterica serovar Virchow strain NCTC 5742 NODE_1_length_470622_cov_64.2193_ID_4248, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14619 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 14558 29 100.0 32 ............................. CACATGCACCTTTTGAGCCAGTAATTGACAGG 14497 29 100.0 32 ............................. CTTGGAAAAGACAACAATATATTGGTAAATCA 14436 29 100.0 32 ............................. GTCACGTACTAGTGACGACATAGACAGACTGG 14375 29 100.0 32 ............................. CGGCGGGACCCCGCGATTTTCTCCCTGACGAA 14314 29 100.0 32 ............................. CTATCCGGGCGTTTACCGTGTGAGCGCCTCCA 14253 29 100.0 32 ............................. GGGGCTTCTCCGCCATCGTAGCGGATTTCAGA 14192 29 100.0 32 ............................. GTCCGGGCGACGTGGCGGCCGTGGTAGTACAT 14131 29 100.0 32 ............................. GCTGGACACCCCGCCGCATAAACGCGAGTCCA 14070 29 100.0 32 ............................. CTCTGACTCGTCATAATCACCCCATCTGGACG 14009 29 100.0 32 ............................. GCATCAACAAAAGTGATCGGCTATACAGTCAG 13948 29 100.0 32 ............................. AAACTTCCGTGGGAGGAAACGGACGGGCAAGT 13887 29 100.0 32 ............................. TGGATTGCGGAAGATGATGGGGTGCTTAACCC 13826 29 100.0 32 ............................. CTGGACGGGCGCGTGCTGGGTAATTACCCGCT 13765 29 100.0 32 ............................. TGGATTGCGGAAGATGATGGGGTGCTTAACCC 13704 29 100.0 32 ............................. TTGGCTATTTACGACGCGGCACTGGCCCGTTG 13643 29 100.0 32 ............................. TGGGTTGACGGTGCCGTGATTGACGTTGCCGC 13582 29 100.0 32 ............................. GGGCTAAATTTGATAAGTGGGAACCGTCAAGG 13521 29 100.0 32 ............................. CTAAATACGGGCCATAGCGGCAGTATTACCAC 13460 29 100.0 32 ............................. GTATTAATTGACGTGGTGACGATGCGTCGTAA 13399 29 100.0 32 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTG 13338 29 100.0 32 ............................. GCCTCTGTAATTGATTCCAGCGTTATTTGCTC 13277 29 100.0 32 ............................. TCTAATGCTTCAATATCAATCATTATGTTATT 13216 29 100.0 32 ............................. CCCGAACTGATTGATGCCATCAGTCAGGGGGC 13155 29 100.0 32 ............................. TGTGGTGGATCACCGAGTGTAGAAAGCGGCCC 13094 29 100.0 32 ............................. ATGATCGCGCCCTCATCTCCCCAGATTTTTGA 13033 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 12972 29 100.0 32 ............................. GCGTCTCCCCTGTAATTGTGACGCTGTCATCC 12911 29 100.0 32 ............................. GGCGTAATACATCATCACGCACAATGACCATC 12850 29 100.0 32 ............................. TTGATATCCGCCTCAACTACTACGAGGGTGAA 12789 29 100.0 32 ............................. TTTCGTCGGAGCTGGTGGACGTACTGGAACAG 12728 29 100.0 32 ............................. AGACACAATACAGCGTATCCACCCCTGAAGAG 12667 29 100.0 32 ............................. CTGAGGTTGAGCCGCAAAAGATTGTGACTGAT 12606 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 12545 29 100.0 32 ............................. AATGTTGCACTCACCTCTCTCGCCACAAAACC 12484 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCATCTGTGCCG 12423 29 96.6 32 .............T............... CCGCGCTGGGCCAGCCGCATAACGCTGGAAAT 12362 29 96.6 32 .............T............... AAAATGAACTCACCGCCTACAAAGACCAGTTG 12301 29 96.6 32 .............T............... CCAATACGTATACTGACAACAGTATTACTGAC 12240 29 96.6 32 .............T............... TACGCCCCGAACGCGGGGCTGGCTGCTGACCA 12179 29 96.6 32 .............T............... GTAATCCGCGCTTACGATACAATGATGGTCGC 12118 29 96.6 33 .............T............... ACGACGAATGCAGCGCAGACTACTGGCGCTGAC 12056 29 96.6 32 .............T............... GCGCTATTCCTACCCCCACACCCCGATCCCCC 11995 29 96.6 32 .............T............... CCGCGCCTTATCGTCGTACATACCCGGCGGTA 11934 29 96.6 32 .............T............... AAAATTGTATCATGTTTGGATTGCTGACAGAT 11873 29 96.6 32 .............T............... GCTGAGTAGGAACACATATTAACCGGCCCTTC 11812 29 96.6 32 .............T............... CGAAAAAACGGGCGCTGCGGGTCATTTTCGAA 11751 29 100.0 32 ............................. ATCCGCGCCTTTCCACGCTTAAACGTTACGTA 11690 29 100.0 32 ............................. TTGTACTGATCATCTTCCAGCCCGGCAAACGC 11629 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 11568 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 11507 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 11446 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 11385 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 11324 29 93.1 0 A...........T................ | A [11297] ========== ====== ====== ====== ============================= ================================= ================== 55 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAATGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 31893-30889 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWLT01000001.1 Salmonella enterica subsp. enterica serovar Virchow strain NCTC 5742 NODE_1_length_470622_cov_64.2193_ID_4248, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31892 29 100.0 32 ............................. TTTTGTTTAATTCTAAAACGGGACAAATGGAA 31831 29 100.0 32 ............................. GGAACAACCATTCCCTCAATGAACGGGTTATT 31770 29 100.0 32 ............................. CGGACAGGCCTGCCAGTCGGGCAATATCCGTC 31709 29 100.0 32 ............................. TTGACGGCCTGGCAGCGCGTGACGTTATTAGC 31648 29 100.0 32 ............................. CCAGGCTGGTACTGTGCGCCATAAAGACGCCT 31587 29 100.0 32 ............................. CCGACCACAATCAGGGAACTGATCCAGCGTGG 31526 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 31465 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 31404 29 100.0 32 ............................. CCTTATCAACTAATTCGTTCCTTGACACTCGT 31343 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 31282 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 31221 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 31160 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 31099 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 31038 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 30977 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 30916 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCACATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //