Array 1 2740081-2742424 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADOUF010000001.1 Longispora fulva strain DSM 45356 Ga0197532_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2740081 29 100.0 32 ............................. ACCGCGGTGATGACGGCCGAGTGCACCTGGCC 2740142 29 96.6 32 ....................A........ GGCCCGCCGGTGACGGTGATGTCGCCGGCGTT 2740203 29 96.6 32 ............................T GACCGGGTACACGGCGTCGTCGGGGGTGTGCG 2740264 29 96.6 32 ............................T TCCTGCTCATCGTCGCAGCCCTCTACCGACGG 2740325 29 100.0 32 ............................. CCCAGCAGGCCGGCCGTCTTGCACTCGACCAG 2740386 29 100.0 32 ............................. GGGTGTATCGACATGACCGGAGCGCGCCGAGC 2740447 29 100.0 32 ............................. GGTCAGGGCAAGAAGCCTTCGGGGCTTCGTGC 2740508 29 100.0 32 ............................. CCGATGTATATCCAGACCGACGCGACCCACCT 2740569 29 100.0 32 ............................. CGGGCCTCGCGGGCCTCGTCGGTCTTGAGCGC 2740630 29 96.6 32 ............................T CACCGGCGGACCGCGTACTACCTCCGTTGTGC 2740691 29 100.0 32 ............................. CCGTCGCCCATGTCCTTCGACGCCGGCAGGAA 2740752 28 96.6 32 ....................-........ GACTTCCTCGCGTACGTAAAGGAGAACGGCCC 2740812 29 100.0 32 ............................. GCCTGCTTCGCCGGCGGATCGGGACGCCTCGG 2740873 29 100.0 32 ............................. GGATCGGAGAGGTGCAGCTCGACCCGGCCGAC 2740934 29 100.0 32 ............................. GTGGGCGGGTTCGTCGCCCTGGTCGGCGCGTC 2740995 29 100.0 32 ............................. CTGGCTGGCCTGGTTGTTGACGGCGTCGTCTA 2741056 29 100.0 32 ............................. TACCGGTCTGACGGCACCACCCGCACCCCCGG 2741117 29 100.0 32 ............................. CGGCAGTGGTCCAGTCGGCGTGGATGACGTCG 2741178 29 100.0 32 ............................. TTCACCGGGCAGTCGGCGCAGACTTCCTCGCC 2741239 29 100.0 32 ............................. CCGACGGTCGCGGCCGGCGCGACAAAGGGGTT 2741300 29 100.0 32 ............................. ACGCTCGGCGTGGGGTCGACGTCGGTCGGGGC 2741361 29 100.0 32 ............................. ACCGCCGGCAGCACCCCGGATGCGGTGGTTCA 2741422 29 100.0 32 ............................. ACCCCATACCCTGGTTCCGGCCCCGCCCGGGT 2741483 29 100.0 32 ............................. AGCAGGGCCCCGCTCCCCCACCCCCCGAGGTT 2741544 29 100.0 32 ............................. CACGCGTCGTCGTCCTTGTCGAGCCACCGCCC 2741605 29 100.0 32 ............................. CCCATGATGACCCACGACCCCGTCGCCGTGTT 2741666 29 96.6 31 ............................T GCGGACATGGCCACCGCCGTGATGGCCTACC 2741726 29 100.0 32 ............................. ACCCCATACCCTGGTTCCGGCCCCGCCCGGGT 2741787 29 100.0 32 ............................. GAGTACCGCCAGTGGTCGCTGCCGTTCGACGT 2741848 29 96.6 32 .....................C....... GGTTTTGGGGACTGTCCACAAGCGAAACCCTT 2741909 29 93.1 32 .......................A....T CTGTGACGTAGGCCGACTGGCCGTAGGCGTTG 2741970 29 100.0 31 ............................. GGTCGTCGCCGTCATCGTCGCCTCCCGGAGG 2742030 29 96.6 32 .....................G....... GCGGTCCGGGTCGACGAGGCGCAGGGCCCGAG 2742091 29 93.1 32 ......T............A......... GGGGCGATGGAGTACATGCCGGAGGAAGCGCG 2742152 29 100.0 32 ............................. GAGATACCGGCTTTCACCTGCGGTCTAGGCTT 2742213 29 100.0 32 ............................. TACACCCGGACGACATTCGCCACGTTCACCGG 2742274 29 100.0 32 ............................. GCGCAGATGCCCCTCGAGGACACGGTGGGCGT 2742335 29 100.0 32 ............................. GGTGGCTTCATCGCCGGCTCGAGCGTCTTCAT 2742396 29 93.1 0 ..............T.............A | ========== ====== ====== ====== ============================= ================================ ================== 39 29 98.8 32 GTCGGCCCCGCGCTCGCGGGGATGTTCCC # Left flank : TTGACCTGTGGAAACGCAGCTCTTCACGTCGTATTCAAGCGCTGTTTTCGGCCCGCGTTGCTCCGTTGTTGCTCCCGCGCTTGACCCACTCCGCATTAGACAACATGAGCCGCCACCCATCGGGAGTCCGCGTCCACCGCAGAGCGCACGTCACGCAAGCTCAATCCCATACACCGAACAACTCGGGCAAATCGCCGATCGGGGTCGTGCAACACGTAACGCGGCCAGCGACCCCGAACTAATCGCCGTCTCTGGCTGGAGAACGCCAAGTCCATACTGCGGCCCGTAGAATCGCCAAGAGTTAGATGGCCGCACGTAGCTCCCCAAAATGTGCGCACGACGCCAGAGCAATGCGCCGACGAGTCCAAGCACAAGGAAGATCAATTCGAAGTGGGTCCAAGAAATCTTCACCCCGGCGCGCCCTTCGATCACCGACGCAGGCTGAAATGCAACTGAATGAACTGGCCCCTCCGGGGCCGTAGAGGCCCAGGTCACCAAGT # Right flank : ATACGTCGAGATTTGTGCCTTCGGCGGTTCCGTCGGGGTGGCATCCGCGTGCGACCTGGTGTGTTATGCCCTTTGGCGGGCGGAGAGGATGAGTCCGTCGTAGTCGGTAGGGTGCCAGCGGTCTCGTCCTGCGGTGCGGACGGTCCAGCCTTGTTCGTTGTTGGCGGGTTCGATGAGGATGGCTTGTCCGTCGTTGATCCGGGTGGCGAGGAGGTCCCAGACGCGGTCTCGGATGCGGCGGCTGGGGTTGCCGACGAAGACGCCGGCGTGGACTTCGATCATCCAGCGGGTGAGGTGCCCTCGGAGCCCTTCAGGTGCGGCGATGAGGATGATGACGGTCATCGGCGTGGGCCGGTGGGGGCCGGTCGGTCGAAGTCGGGGCCGATGACCGCGAGGTGTTCGTCGCCCATGCCGGGGTCAATGGGCCCGAGCGGATTTGCGTCGGAGTTGGTTGCCCAGTTGACTCCGCCTGCGACGGTGCCGAGGTGTTCGTCCCAGAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCTCGCGGGGATGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2752212-2754189 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADOUF010000001.1 Longispora fulva strain DSM 45356 Ga0197532_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2752212 29 100.0 32 ............................. GCGGTGTGCTCGCCGATCTCCAGGGGCAGGAG 2752273 29 100.0 32 ............................. GGCACCCTGGACGCCGCCTCCGCGTCGAGGGT 2752334 29 100.0 32 ............................. CGGTCGAGGTGGGCCGAGTGGGGCGGCGTAGC 2752395 29 96.6 32 ............................G CCATGGCCGGCCACTTCACCCGCCCCGGGGAG 2752456 29 100.0 32 ............................. GAAGATCCGGCCGACCAGGTCGGCGTCGTGGA 2752517 29 100.0 32 ............................. GCCGCCGACCCGGTGAACAGCTCGCCGAGAGA 2752578 29 100.0 32 ............................. GTCGACCTGGGCGAGTGCCCGAGCCCTGCGGC 2752639 29 100.0 32 ............................. TCGGCTCTGGCGGGACCGAGCAGTGACCGCCC 2752700 29 100.0 32 ............................. ACCTCGGTCAGGACCCGGGTGCGGACCTCGCC 2752761 29 100.0 32 ............................. CGGTCGCCGTCCTGGACGACGACACCGCCGCC 2752822 29 100.0 32 ............................. TCCCCGGACCGGGTGGCACCCTGCATCATCCC 2752883 29 100.0 32 ............................. GCCTGCCATTCGTCCATGCCGCCGTGCTCGGT 2752944 29 96.6 32 ............................T CCCTTCACGAAGATCCAAACTCCGCGCGCCGT 2753005 29 100.0 32 ............................. GCCTACGACCCGTCCGAGGACTCCGTCGCCCA 2753066 29 100.0 32 ............................. TCTCGGTCAGCCAGGTCGGGGTCGTTCACGCA 2753127 29 100.0 32 ............................. GGCAGAAGGCCCAACGTGACGCAGCGTGTACC 2753188 29 100.0 32 ............................. ACCGGACCCGTCCAGGGGATGCGGCACTACCT 2753249 29 93.1 31 .................A..........G GTCTCCTTGACGGGGCTGACGCGGTCGTGGC 2753309 29 100.0 32 ............................. CGGCTGCGGTCCAGGTGGTACCGCAGCACCGC 2753370 29 96.6 32 ............................G ACGCGTTCGGGGTGCTCGCCGACGCCCAGGTG 2753431 27 93.1 32 ...........--................ TCGATGTCCGGGGAGCGTGCCTCAACCTCGAC 2753490 29 100.0 32 ............................. CAGTTCCCGGCATAGCCACGCCGAGAATCGAT 2753551 29 100.0 32 ............................. ACCGTGCGCAGGAACCCGTAGGCGAACAGGAA 2753612 29 96.6 32 ............................T CGGTCACTTCCAGGCCGAACACCTCGTGAGTA 2753673 29 96.6 32 ...................A......... ACCCGAGCAGTTCGCCAGCCTCATGGGTGATC 2753734 29 96.6 32 ............................T TGCGCGCCGAAATACGGAGTGATGCTCCGGAC 2753795 29 100.0 32 ............................. ACCACGTGCGCCCCAAGGACTGGAAAACCTGG 2753856 29 96.6 32 ............................T GTGCGGTGGCCGAGCCATACGCAGCCCGCTGC 2753917 29 93.1 32 .........T.A................. ACCGTGCGCCCGGAGCTGGCCATGCCGGTGGA 2753978 29 100.0 32 ............................. CTCTGGCTGATCGACGCCGGGGGTCTCTGGTG 2754039 29 96.6 32 ...T......................... TTGTGCCCGCTGATGCTGATCGAGTCGGTCAG 2754100 29 100.0 32 ............................. CAGGACTCGTAGTCGTAGCCGATCCAGATCCC 2754161 29 96.6 0 ...C......................... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 98.4 32 GTCGGCCCCGCGCTCGCGGGGATGTTCCC # Left flank : CCCACGTCAGACCCGACCCCCACACCGCGGCGGTACCCAACGGATCAACCTGCTGAAACGCGGGCGTGGCCTTCCCGCAGTCATGCACACCACACAGCCACGCAAAGAACCGCCGGCCCCGACCGACACCGCCTGCGACGTCATCCAACACCCGCCGGACACGCACAGGCAGATAGCAGTCCCACACCCGCTCTGCCACCGCAGCCGTGTCCAACATGTGCGACAGCAGCAAATTCATCACCCCGCCGCCGTTCATCGCCGACTTACCCCACAGCACACCTACCCGACCACGCACCTCGACTCCGTAGAATCGCCAATAGTCAACAGCGACAACCGCAGGTGCGTCATTCATGCCCACGACGCTAGAGCAAGGCACCGACAATTCCGTCAAGAACAAGATCAATCCGAGATGGATCATGTAATGCCGCCAGCGACCCCAGACCGCAATGCAACTGAATGAAATGGGGCCTCCCGCACCGTAAAGCCCCAGGTCACCAAGC # Right flank : CGGACCGAAGGGTGACCCACCCAAGCTGTCGCCGTCCGGGGACTGATCGCCGTTTGAGCTGGGGCGTAGCCTGCCAGTCATGAACGAGCGCACTCCGGGCGCGTGTTTCGGCCGTGCTGAACTCGGCACCTTCCCCCCTCGGGCCCGACGGCGGTGCTCTCACTGTGCTCGGGTCCGGCCTGGTGCTCATCGGCCCAGTCGTCGTGCCAGTTTTGCTGGGCGTTGACCCAGGGGCGTTCCCTGCCTGGGCGCGGTGGGGCACCTGCGCCGCACCGCCGGCGACCCCACCGACTGAAGCGAACTTGGCCAGCGTCGAGTGGTCCACGCCTACGATCAGGCCATGGCGTGGAACTACCTGCAGGTCATCCTGAGCTCCCCCGTCGGCCAACCCCAGCCCCCTGTCGACCAGCCGAGCAGCACGCCGAGAGCCCTGATGTCCAGGTCGCGACAGGTAACGGCACCGACCCCCTCGGGGCGCAGCACCCGAGCTAGCCGCTTGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCTCGCGGGGATGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //