Array 1 2492-99 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNHH01000052.1 Daejeonella rubra strain DSM 24536, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 2491 46 97.8 29 A............................................. AGCTCGACGGACAGGATTATTATTACGTA 2416 46 100.0 29 .............................................. AATCCCTGCAAAAATATTCTCCCAACAGT 2341 46 100.0 30 .............................................. TTTAGTTACAATCGTAACGGGCGACATTAA 2265 46 100.0 30 .............................................. GCCACCCAATGCCTTTAATGCTCCGCCTGT 2189 46 100.0 29 .............................................. ACCTCAATACGATTACCACCTGTTCCAAA 2114 46 100.0 29 .............................................. GGTATTGAAGTCAAGCTTCGCAGGTCAAG 2039 46 100.0 30 .............................................. TCACCTCCAGCAATAGCAGGCATGTTAGCA 1963 46 100.0 30 .............................................. AATGTTCCGTTTTTAATGTAGTTATTGAGT 1887 46 100.0 29 .............................................. TAATGGTCTCTTTAATTTCATCCCTGAAA 1812 46 100.0 30 .............................................. AACGTTAAGGATCCAACGCTACAACCAATA 1736 46 100.0 30 .............................................. TGCTATGTGGTTTATATCTAGTGTGTAGTA 1660 46 100.0 30 .............................................. CCGCTTTTGGTGTAGGTTCGGCCCGCTATA 1584 46 100.0 29 .............................................. TTGGGTTGATCACGGTCATACGTTGGAAG 1509 46 100.0 30 .............................................. CCGTACACACACAACATAAAACCCCCAAAA 1433 46 100.0 30 .............................................. GGGGCCAAAATAAGACTATCAGACGAATAA 1357 46 100.0 29 .............................................. CATAAATAACAGGTTGATCAGGTTTAATA 1282 46 100.0 29 .............................................. AAAACTGTTATATTACAGGATCTGTTACA 1207 46 100.0 30 .............................................. TTTATCTGAATACATGTAAGCTAAAGTATA 1131 46 100.0 30 .............................................. ATTGATTTCATCAACACTACATTCTACAGT 1055 46 100.0 30 .............................................. TTGATCAATATAAATAGCTACTGGTTGTAG 979 46 100.0 30 .............................................. TCTTCTTGTAGAATACACTTTGACCCAATG 903 46 100.0 30 .............................................. TTGGGAATTGAGACACAAGGCGGGTCATTT 827 46 100.0 30 .............................................. TTCCCTTAATAATAGTTTCAAACTCATTTA 751 46 100.0 30 .............................................. ATACAATTTTCATAAAATAGTGTGTATTAA 675 46 100.0 29 .............................................. CGCGAAAAGAAGCTTGTCGAGAATAAATA 600 46 100.0 30 .............................................. CCATCTTTCCCTTTGGTCTGTCTACCGGTA 524 46 100.0 30 .............................................. AATTTGTTTTTTACCCTCAAATGAAAAATA 448 46 100.0 30 .............................................. TTAGATTGCCAAATACAGAAACTTCATATT 372 46 100.0 30 .............................................. ACCAGGCATCCAAGGATATTAAGCCAAACA 296 46 100.0 30 .............................................. CCATTGCAAATGTTGGCTTCCCTGTAAGAG 220 46 100.0 30 .............................................. CTATCTTTATTAAATAATAGCCAGGTGAAG 144 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 32 46 99.9 30 GTTGTGATTTGCTTTCATTCTTTGAACTACTGATATTTACAACAAC # Left flank : ACATTACAGATACTGGTACCAGAAAAAAAGGAAGCGGTGATCAAAGTAATCCTTAAAGAGCTTGGTATAAGTTTTAAATCTATTAAAGAAGTTAAGGAACCCAATTCTGAAACTATCTCAGCCATGAATGAATTAAAAGCTGGGAAAGGTAAAAAATTCAAAAATGCAGAATCTTTATTTAATAGTATTAAATAAAGATGTTTGCTCTGGTAGCCTCTAATAAGTTTCTTAGGGATATTAAACTTCTTAAAAAAAGATCGCTTAAGGATTTCACAATTCTTCAGGATTTTGTTGGTTTGCTAGCTGAAAAAGGTCATGCAGGACTTGATAAAAAGTACAGGCCTCACCGCTTAAGCGGAAATTTTAAAGGATACTGGGAGTGCCATGTTAAGACGGATCTATTGCTTATTTGGGAAGAGAATGAAACTTTAAACCTTATTGAGCTGGTGCGGACCGGAACCCACTCCGACTTGTTTTAATTTGATTTGCCCTGATTTAGC # Right flank : CAGCTAGATATTCCGACGAAAGTACGCCAGTGTTCCGCGACAAAGTACCCCATTTATTCCGGAGCAAAGTACGCCAGGCAGACCGGCCTGTAACATCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTCTTTGAACTACTGATATTTACAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.57%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCATCCTTTGAACTACTGATATTTACAACAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.30,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 127-6321 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNHH01000013.1 Daejeonella rubra strain DSM 24536, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 127 46 100.0 30 .............................................. TATTTGACCATTTTTATCATATTGAATAGA 203 46 100.0 30 .............................................. TGGTAACATCAAAATGAACGGTATAATTCA 279 46 100.0 30 .............................................. TTTTTGCTAATAATATATCGGTTGCACCCC 355 46 100.0 30 .............................................. ATATCTTCTGGATATATTGAGGATTCAATA 431 46 100.0 30 .............................................. TAAAATCACTCACTAATGCGCCGCTTGATA 507 46 100.0 30 .............................................. TTTTACGTACAGGGAATGTAATATGAAAGT 583 46 100.0 30 .............................................. CCTACCAATGGAAGGGAAGTCTTTCGTATA 659 46 100.0 30 .............................................. TTGTATCAGTTTCAAATGGCAAAAGCAATG 735 46 100.0 30 .............................................. TAAAGTTGTTGTTTCCTGAGCCGCAGACTG 811 46 100.0 30 .............................................. CACAGGATTTACAATGTTAATATCAGGACT 887 46 100.0 30 .............................................. CATTGTTGTAAGCATTTGCGATAGCTTCAA 963 46 100.0 30 .............................................. AGATAAGTATTGAAGCGTAGATGCTGACCA 1039 46 100.0 30 .............................................. CAGGACCTACCAAAGGAACCTTACTTGCTA 1115 46 100.0 29 .............................................. CCAGAAAACATCAGTAGCGATCCGTATTA 1190 46 100.0 30 .............................................. ATTACAGGTGCAACGGTTACGGATTACATA 1266 46 100.0 30 .............................................. AAATCACAAATGAGGATAATATGGAATTGA 1342 46 100.0 30 .............................................. CTGAGTTCTGACCACCAACCAAAGATAATA 1418 46 100.0 30 .............................................. GGATAGCCAGAGGGATTATAAACGCCAATA 1494 46 100.0 29 .............................................. TTGATCCTGCGCTGGATTCCCTCGCCAAA 1569 46 100.0 30 .............................................. GTGTAAATAATGAATCCTAACAACTACATA 1645 46 100.0 30 .............................................. GCATGATAGGTTTTACGTAGTATCAATCCT 1721 46 100.0 30 .............................................. AAAAGACAAGATAAGAAAGTATGAACAAAT 1797 46 100.0 30 .............................................. TATCATGGAATGAAACAAAAACCTATGATA 1873 46 100.0 30 .............................................. CCTGCTTGAAGCTAATGGGATAATGGATAG 1949 46 100.0 30 .............................................. TTATTAACAAATCCATTCGATCCAGTCAGT 2025 46 100.0 30 .............................................. ATTATCCGTTTAATTATAAATTCAATTACT 2101 46 100.0 30 .............................................. GAGATAGTTTTTATATTAGGTTTAGGCTTA 2177 46 100.0 29 .............................................. TGTAAATAATGAACCCTTGCAACTACATA 2252 46 100.0 30 .............................................. GAAAACCACATTAACCTTTGAATCATATTG 2328 46 100.0 30 .............................................. AGCTGTCAAGTCCTCGGTTTCAGCTCTTTA 2404 46 100.0 30 .............................................. AAATGCTTCCGCATTAATGACTGATGCACT 2480 46 100.0 30 .............................................. CAAAGATCGCATCGTTCTTGGCATTAGATA 2556 46 100.0 30 .............................................. TACCAACATCCTCATAATAAACATCATTCA 2632 46 100.0 30 .............................................. AGGAAGCTTTGTTTATAGTTACTGGTTTCA 2708 46 100.0 29 .............................................. TGTAAATAATGAACCCTTGCAACTATATA 2783 46 100.0 30 .............................................. TTACACAAATTGCCAACTTTGCAGGAATTA 2859 46 100.0 30 .............................................. AATTTTTCCGCTTGGTGATGTAATTTTATA 2935 46 100.0 30 .............................................. CTTTATCCTTAGTGAATTTGGCATCTGCTA 3011 46 100.0 30 .............................................. ACCAACCAAAGATAATACAGATCGTACAGG 3087 46 100.0 30 .............................................. TAGGGGAGCTGAAACTATTGTCAGCCCCAA 3163 46 100.0 30 .............................................. GGCAGCATTATTTGGCGTTCAGGAAGAAAG 3239 46 100.0 29 .............................................. TTACTAAAGGATTTATATACTTATCCATC 3314 46 100.0 30 .............................................. TTCCTTTAACTTTAATTTAGCTAATGCAGA 3390 46 100.0 30 .............................................. ATAAATCAAGTGCAAGTAAGCGATCTTCTA 3466 46 100.0 30 .............................................. GCAGAAGTGTCTAAATATAGGATTGAAGTA 3542 46 100.0 30 .............................................. TTGTTTTCAATAACTCATTATGGATGTGTA 3618 46 100.0 30 .............................................. TTCAATGGCTTGCAAGTCATTCCAACAGTT 3694 46 100.0 30 .............................................. CCTACCAATGGAAGGGAAGTCTTTTGTATA 3770 46 100.0 29 .............................................. TATTTCAATCTGTTCTTTATCTGCCAGTA 3845 46 100.0 30 .............................................. GCAGTTGGCTCTTAAGTTTGCGGCCTGGTT 3921 46 100.0 30 .............................................. CTCTATTTATTCAACAAGTTTAATTGAGCA 3997 46 100.0 30 .............................................. AAAATATTACGAGCGATTTGGATATATCTA 4073 46 100.0 30 .............................................. TAGGGGAGCTGAAACTATTGTCAGCCCCAA 4149 46 100.0 30 .............................................. CTGAGTTCTGACCACCGACTAAAGACAATA 4225 46 100.0 30 .............................................. TACATTTTCGTATGACTTAATCATTGACGA 4301 46 100.0 31 .............................................. TTGCCCCTGGAAGCTTCCATTCGGGCTTGGA 4378 46 100.0 29 .............................................. TTAAATAGGGATATATTTCAGGGTCATTT 4453 46 100.0 30 .............................................. TGCTCGTAAAGCATTGGTTACCGATATTGT 4529 46 100.0 30 .............................................. GGGGAATGTAAGTATGAAGGGGTGCTCTGT 4605 46 100.0 30 .............................................. GAAAAGCTTTAAAGACCTCGGGATCACTCC 4681 46 100.0 30 .............................................. AGTATTTCAGTCATCCATCCATCCCGTTCA 4757 46 100.0 30 .............................................. TTAAAACTATTGAAGAATCCAAACCCAATG 4833 46 100.0 30 .............................................. TTAGCCTGTATTGCCTTATTGATTCCATTT 4909 46 100.0 30 .............................................. AATTCAATTTTTAGTTACAGGCGATACAGA 4985 46 100.0 30 .............................................. GCATCAATCATTGCTTCTGTCAGCTGTGTG 5061 46 100.0 30 .............................................. TAGTATACGCAATTTGCTGCCCAATAACAA 5137 46 100.0 30 .............................................. TTTTTAAGTAATCCTAAAGTATCAACTGCA 5213 46 100.0 30 .............................................. AATTGGCGTTGAATATACTCAATCAAATGA 5289 46 100.0 30 .............................................. ATTATTGCATAAATGGTTGCGTTTGACCGA 5365 46 100.0 30 .............................................. TTGTTTTCAATAACTCATTACGGATGTGTA 5441 46 100.0 29 .............................................. CTACCAATGGAAGGGAAGTCTTTTGTATA 5516 46 100.0 30 .............................................. CAATATATATTTCCATTACCAATTTTATAA 5592 46 100.0 30 .............................................. TCCTTTAATCCTTTAGATGCTAATTCAATA 5668 46 100.0 30 .............................................. TCACTCGGTTTTGAAATTGAACAATCTGGA 5744 46 100.0 30 .............................................. ATCAATATAATCCAAACTAACAGGCAAATA 5820 46 100.0 30 .............................................. GGCTTTATGACAAAGCCTCTTCGAGTAATT 5896 46 100.0 30 .............................................. AAATAGCTCGCGGGCATTGGTTTATGAATA 5972 46 100.0 30 .............................................. TTAATTCAATTCCTACTATGGATCGATTGA 6048 46 100.0 30 .............................................. CTAAAGGGCTGGATGAATCTTATTTGTATG 6124 46 100.0 30 .............................................. ATCGAGCGGAGTACGAGAAAGTAAATCGGA 6200 46 100.0 30 .............................................. TACTGTTGCAGCTACATGGGAAAGGTTAGG 6276 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 82 46 100.0 30 GTTGTGATTTGCTTTCATTCTTTGAACTACTGATATTTACAACAAC # Left flank : GGTAACCTTTCCCTCGGAATCGTGGCGTACTTTGCTTCGGAATGGGCGGCGTACTTTGTGTCGGAATCGTGGCGTACTATGGAGCGGAATATCCAACAGCATTGTGAGATGTAAGAGTAGGGTATAG # Right flank : CATACCATGGTTCAAATTATTCATTATCAGTTAATTAAGTTCAGAATTAGGAATTAAAAAATCCGGTTGCATAGCTTCCGGATTTTAAATTCTAAAACAATTCCAATTGCTGTGGGGTATCCGGAAGCTCTTTTTCTTCCTTTCCATAAAATAATTCCATCATTCCGAATTGTTTATCTGTTATCGTCATGATACCTATATGGCCTTTTGGAGGCAGATTTTTTTTAACACGTTTGATGTGTACATCGGCATTTTCGCGACTGCTGCAATGCCTCAGGTATATGGAAAACTGGAACATAGCAAAACCATCTTTCATAATATCCTTACGAAATCTGCTTGAAATTTGCCTGTCTTTTTTTGTCTCAGTTGGCAAATCGAAGAAAACTAAGACCCACAAGATCCTGTATTCATTTAAACGCATTTATCAAAAAGGTAATTCCTTTTCATTAGCTGTATCGCTATTATTATCCTCTGGATCTTTTGACTCATTAACTTCATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTCTTTGAACTACTGATATTTACAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.57%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCATCCTTTGAACTACTGATATTTACAACAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //