Array 1 3878-13 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVLA01000001.1 Neisseria lactamica strain 338.rep1_NLAC 11_13609_180102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 3877 33 93.9 33 CT............................... AGATCACTTAGCTTGTTCACATCTTTTTTGATG 3811 33 97.0 33 .G............................... TTTGGATACGACCTTGCATTTTTTATCCTTGGC 3745 33 93.9 34 GT............................... ATTACCGAGTAACACCACACCGCTCATTGTCAGT 3678 33 97.0 33 G................................ ATTGCAGATAGTAGTGCATTTGCCTTTTTAGCG 3612 33 93.9 32 TT............................... TATAATCGGTGCCGGGGCAGTCTGTTCAACTT 3547 33 93.9 33 GT............................... TTTGAAATCAACATATAGCAAAAAATATAGCAA 3481 33 100.0 33 ................................. ATAGGGCGCATGGTATGCCCACGCCGTTTACGG 3415 33 93.9 33 CG............................... CGATGTGATTCAGGCCGTCTGGCAAGTCATCAC 3349 33 97.0 33 .G............................... TCAACCGCTCAAAAAGTGATGTGGGATTTGCCC 3283 33 97.0 33 .C............................... GACGATTTGAAAGCCAGCAATATCCAAGATTTG 3217 33 97.0 33 C................................ TGTTACGTCTGATAAGTTATCTGTGCAAAACCT 3151 33 97.0 32 .T............................... ACACCAACATCGGGGATACGGTCATTTGTGTT 3086 33 97.0 32 .T............................... GCTTACCCAAAGCCAGTTGCGCGTAGTGTGCA 3021 33 97.0 32 .C............................... ACTTCACCTACCATCAACTCAATCCGTGCAGC 2956 33 93.9 33 GG............................... TCTTGACTTATACGACAAGCTAGGTTATAATGC 2890 33 97.0 33 G................................ ATCGTTCCAGCTTCGTCCTACATCGCAATCATT 2824 33 97.0 32 G................................ TTCACGAAACTCAAACCCTCACGCTCCAACTT 2759 33 93.9 31 GT............................... CTCTACCGATACCGCAACAAAAGGAAAAGGA 2695 33 100.0 32 ................................. TCGAAGTCCTCATCATCGCCGAACACATGGTA 2630 33 100.0 32 ................................. AGCGCAAACACAAAGGCCGTCCAGAAGCTGGA 2565 33 97.0 32 .T............................... AACCTCTTTGTCGATAGCCATTGGGAGGGCAG 2500 33 93.9 35 TC............................... ACTGACCGCCAAGCGCAAAGAGGCGAAGCTGCAAA 2432 33 97.0 32 .G............................... TTTATATGGCGAGTTATGCGTTACTGATTTCA 2367 33 93.9 33 TG............................... CAACTTTTTTTCGAAAAAATTTTTTCATCTCTC 2301 33 97.0 32 G................................ AGGGATGTTGATTGAACAGAAGCCCGTGGAAA 2236 33 93.9 32 TC............................... AATTTCATAGCCGCCGTATGTGAAATAGTCGG 2171 33 93.9 34 TT............................... TTTAAATGCAAATTTCGCGCGTTTTGCCTGTTTT 2104 33 100.0 33 ................................. AGCTTGGCGAACGCGGAAATTAATGCGCTCGAA 2038 33 93.9 32 GC............................... AGAATTGACAGCCTGAATAGCTCATACAACTT 1973 33 97.0 34 .T............................... ATTTTGACCATCTCGAGAGATGGAAAAAATTTTT 1906 33 93.9 32 TG............................... GCCCGCCCTCTTTCCGCGCCGAAAAAATAAAA 1841 33 93.9 33 CG............................... AGTAAATCCATCCAACTACTGGAAAAACTGGAC 1775 33 97.0 34 G................................ AGACGGCCTTTTTTATTGGGGGTATGGCAGGGGC 1708 33 93.9 34 GG............................... GCCTTGCTCTTCGGCGCGCTCGCCTGCGGCTTTG 1641 33 97.0 32 .G............................... ATGTATGGCAAAGTTGGAAAGACATCAGCGCA 1576 33 93.9 33 CC............................... ATCGTCGAGGAATATGGCGCGGCGGTTTTGATT 1510 33 97.0 34 G................................ CTCTCAAGCGAACCGGCTTTGCTTCCAATGTTGA 1443 33 100.0 33 ................................. TAAAGGGAAAAGTTAAGTGCTTGATTTTAAAGG 1377 33 100.0 31 ................................. CTTTGCTATAAGCCTATTCTTCACGCTTGGC 1313 33 93.9 32 GG............................... CACAATATAGCCTTTCAAGTCTTTGAGGCCGG 1248 33 97.0 33 .G............................... ATCTCAAAAATTTTTTTCTCGACACCTCCGAGA 1182 33 100.0 34 ................................. GTGCATGATCGTCCGCGTATGGTCTTGCACCTGA 1115 33 100.0 33 ................................. GAGGAAGCGGCAGAGAAAGCCGAATACATCAGA 1049 33 97.0 34 .C............................... GACCACAGGGAATACCTTGTCGGCAAGTTTGATA 982 33 97.0 38 T................................ GAGCTTCCAGCGAGCGCGAAGTTTCTCTGGACAGCGGC 911 33 93.9 34 GC............................... GAGCTGGTCGTTGACGTAGGCGACGGCGTTGACG 844 33 93.9 32 GC............................... GGCGTCAACGTGGACGCGGCGCAGCTCTCGAT 779 33 100.0 34 ................................. GGAATCATGGCGGCTTTGGCGATAATTTTGTCTT 712 33 93.9 34 GG............................... CTTATGTCGGCCCGATTCTTGCCGTTGCAGCAAT 645 33 93.9 33 GG............................... TTTAAAAATTAGTTTGCCAAGATTAAAATATTA 579 33 93.9 33 TT............................... CGCTATGCTCACACGCACGCAGAACTTCCGCAC 513 33 93.9 34 GG............................... TGAACGTATCGACACGGCACACGCTGATTCGTGG 446 33 93.9 33 CG............................... GCTACATCAAATAAGCAAAGCCCAGCAACATTC 380 33 100.0 35 ................................. ATGGCGAACGGCGAGGCCGTCTGTAACTTTTCCGT 312 33 97.0 35 .G............................... CTGTACTTCTTTTTTACGATTGTCGCGCCATTGGG 244 33 97.0 33 C................................ TATTCAGCCATCTGACAGGGAGCGGAACGTTTT 178 33 97.0 33 T................................ ACTCCTAAGATTTTGGATTCATGCGCCGCCCAG 112 33 93.9 34 TC............................... TGCATCGCTCTTGTCTGCGAAGTCGGGGTATCGG 45 33 93.9 0 GC............................... | ========== ====== ====== ====== ================================= ====================================== ================== 59 33 96.1 33 AACAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : CTGTATATGGGAATACAAAATGCTAATGCTGATTACTTACGATATTTCGTTGGAAGACGCGGACGGACAGGCAAGGCTACGGCGCGTGGCGAAATTGTGTTTGGACTACGGCGTGCGCGTGCAATATTCGGTGTTCGAATGCGACATCGCGCCCGATCAGTGGGTTGTTTTAAAAGACAAACTCTTAAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTATCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCGAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTAAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATTGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGCGTAACGGAAAAGGCTGTGTTATACTCGCGTTCACGCTTTTCTTAGGAGCTTAGCGAAATCGGGGCTGCGAAACCTGATGGAGCAAGGCTTTTAAGAGAGG # Right flank : CTTTTAATTGTGG # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1-3965 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVLA01000038.1 Neisseria lactamica strain 338.rep1_NLAC 320_4151_57869_26_,115+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1 31 93.9 34 --............................... CTGCGCCTGAAGCGGTGAAAGAACCTGTTGAAGA 66 33 97.0 31 G................................ TATCATGTACCTGACTAACGACCCTTGGCCT 130 33 97.0 32 .T............................... TTGTGCCTATTGGCTGGCAATAACTCACTTAA 195 33 97.0 32 .T............................... ATGTCGATAAAGCCATTTAGGGATTTGGCTTA 260 33 97.0 31 G................................ ATCGCAACCGCCTGACAAGATGGTCGACATA 324 33 97.0 33 T................................ TGTTACGGTATCGCCATGTACGGGGTTAATATC 390 33 97.0 34 .G............................... ATCTATCGCAGGTGGCAAAAAAAGTTTTTAACTA 457 33 100.0 32 ................................. ATCTCCAGATCATCTTTTTCATGCACAAAACG 522 33 97.0 31 C................................ TACAAACGCGCGAATCGGGGAACAGGCAATT 586 33 97.0 32 G................................ CGCGATTTCCTTACGCCAAATCCTGAGCCTGT 651 33 93.9 33 TG............................... TATCGTTTTGCCGATTTGGGCAGACAATAAGCC 717 33 93.9 31 GG............................... ATTCGTTTGAACTGTCCGCTTCGTTGTGCAA 781 33 97.0 33 G................................ AGGGATACTGTTTACCGGCTTGACGGCACTGTT 847 33 100.0 31 ................................. AGACAGTCTTAGACAGTTACAACTTGTCGGA 911 33 97.0 32 .G............................... CAACTATTTAATTCAGTCATACGCAATGACTG 976 33 100.0 31 ................................. AACCGCTTCTGCATTTCCACTTCCAACTCGC 1040 33 97.0 32 T................................ GTTGCACCATTTGCCGACCATCGCCTATGAGG 1105 33 93.9 31 TT............................... TGCACCGCTACCCTGCCCAGTCGGGTCAACC 1169 33 97.0 36 G................................ ACCAGAATTTGCCATGAATAAACAAATCGTCGAATT 1238 33 93.9 33 CT............................... ACTGCCCAAACTTTTTTTTCGAAAAATTTTTTC 1304 33 100.0 33 ................................. TTTAAAATTTAGTTTGTTAGTAAAAATTTTACT 1370 33 93.9 33 TG............................... ATCTCTCACACACTTTATACCAACGCCATTCTC 1436 33 93.9 33 TG............................... AAAACCAAAAAATCGAACACATCGACCAAACCA 1502 33 100.0 33 ................................. CGGCTCAATTACAAAGTCGGATTTGCCGTAAAT 1568 33 93.9 32 CG............................... TTATTTTTTTTGTTTTGGATTTTTTCACCCGC 1633 33 93.9 33 GT............................... ATCAAATAAGCGAAGCCCAATAAATAACGGCGC 1699 33 93.9 34 GT............................... ATCTCTTCGAGTGGCCAAAAAAAGATTTTAACTA 1766 33 100.0 31 ................................. ACGGCGAAGAGCTTGACCTGATGGAATCGGC 1830 33 97.0 31 .G............................... CACTGCCTTGAGTGTCTCGCCGTGAATTTCC 1894 33 93.9 31 GG............................... ATGCCCCGCATGAATCATTGAAATAGCCCTT 1958 33 100.0 33 ................................. TAAATGGAGTTCCCCACGCCACCCATACCAAGT 2024 33 97.0 31 .G............................... AACGAAGACCCTGTGCAAATCATTGACGGCG 2088 33 97.0 32 .G............................... TAAAGGGATACCATTGAATTTTTCAAAATTTT 2153 33 93.9 33 CA............................... ATAGAATTGACGGTTTTAAAAACCATCATCGCT 2219 33 93.9 35 GA............................... CGTAAATCCCCACTCTTGACCCAGTTTTTTAACTC 2287 33 93.9 32 GG............................... CGGGTCAGTTTTGGGGCGGTGCATTTCCGATT 2352 33 93.9 32 TG............................... TGCCACATTCAGGCGTGTAGTGCTGATTGGCG 2417 33 93.9 33 TT............................... GCCGTCAAAAAATAAAATCTGTTGATATTCAGG 2483 33 93.9 34 CG............................... TCACAAGGACAGGGGTTTTTATTTACCGAAACCA 2550 33 90.9 32 TG...........A................... AGCAGTCATCTCAAGGCTTGACCCTGCCTGTT 2615 33 90.9 34 GT...........A................... CAGCTCAGCACGCCCAATCAGCGCGCCTGTTACG 2682 33 90.9 35 GA...........A................... AGCGGAATATCAAGCCAAATCATCTAGCCATTGTG 2750 33 93.9 33 .G...........A................... AGGCCTCCGAAGCAAAAGCTTGGCAGTTAGATA 2816 33 93.9 32 .A...........A................... GTATAAAGGCCGTCTTAAAAATAAAGCCGTTA 2881 33 90.9 32 CT...........A................... CAAAATCGAACACTCAGGAAAATTTAAAACTA 2946 33 93.9 33 C............A................... AGGCGACGGCTGTGCTGGGATAGCACTGTTACC 3012 33 97.0 31 .............A................... TTACAATACTCGCGGTAGGCCGCCCACTGTT 3076 33 90.9 32 GG...........A................... TATACAAACGTCCACTTATTTACGAAATCATT 3141 33 93.9 32 .A...........A................... AAGAGTATCTCAACCTGTCTGAAGAAGAACAG 3206 33 93.9 33 G............A................... AGGCGGTCGGCTCTGCGTTGTCATCCAGAAGCC 3272 33 93.9 33 .G...........A................... AGGCAGTAAAACGGCCAAAGCAAAAAACTGGAC 3338 33 93.9 33 .A...........A................... GGTTCGGGGCGTGTCGGTGTGTAGGCAGGGTGT 3404 33 90.9 32 GG...........A................... GGCCATGCATTAGGTCTGATATTTGGTGCATT 3469 33 90.9 33 TG...........A................... CTACCGCCAAACGGCGTTTGTCCTCAACCCAAA 3535 33 93.9 35 .G...........A................... GGGGCGCAGCTCGCCTTCGATGGTCATCTCTTCGG 3603 33 90.9 32 GG...........A................... AAGCCCTGAATGAGTAAACCAGCCCATTGAGG 3668 33 97.0 33 G................................ AGGTAATCAGCTATCGATATGCTTTGCAATATA 3734 33 84.8 33 TT....T.......T..A............... AGCAACCATTACGAAAGTTAGCATTATGGAACC 3800 33 87.9 34 GT...........A...........C....... CAACATATCGGGATCGATACCATATTTGTCGCCG 3867 33 93.9 33 ......T.....T.................... CCAACCGGGTATAGCAGCCTGACAACCTGTACC 3933 33 93.9 0 .................A....A.......... | ========== ====== ====== ====== ================================= ==================================== ================== 61 33 94.8 33 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : | # Right flank : TCTGCCACCGTATCTCATGTTTGAGTAGGGAAGAGGGCTGTATGTTCAAATATCGTCCAAGCAGGCCACTTTTCTTTTGATTCTTCGCTTTCCGAAGCTTTAGTGAAAGCAGTGGAGGATATTAGAAGCAAGTTATAAAGGGTAATCAATAACAATGCCGTCTGAAAAAGTTTCAGACGGCATTTT # Questionable array : NO Score: 5.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.14, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : CAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 12-830 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVLA01000028.1 Neisseria lactamica strain 338.rep1_NLAC 230_843_10482, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 12 33 97.0 32 T................................ GTTGCAGTGTGGGCAAGCCCAGTACCATCTAC 77 33 93.9 33 GT............................... AGAAGCAAGAAGACCATTTCGAGGTATTGACAG 143 33 93.9 32 CT............................... CAGTGAGGTTGACGAATATATCAGCAAACTGG 208 33 97.0 32 C................................ CGCCCATAAGAGATACGCGCACAATAAAACCA 273 33 100.0 31 ................................. ATCGGCCATTTGTGGAACGCGAAGAAAATCG 337 33 93.9 34 .G..........T.................... CCCGCTACTGCCGCCGCTGCAACCGCCGATACAA 404 33 97.0 32 T................................ CCTCTCAATACGCCAATTTTTGCGACATCAGC 469 33 93.9 31 CT............................... ACAGTCGAGCTTGTCTATTGGAAAGAAAGCG 533 33 93.9 32 TG............................... ACACTGTTTGATTAACCCCAACCAAAGGAGGT 598 33 93.9 32 CG............................... AACTCAAACGCTTGGAACTGGTTAGGCGTGAT 663 33 93.9 34 GA............................... GACCACAGCCGAAAGCTCTTTAAAAATTCGGAAA 730 33 100.0 35 ................................. AAAAGTGGCTGTTTGGCACTGGTACGCGTGTAGTC 798 33 93.9 0 GA............................... | ========== ====== ====== ====== ================================= =================================== ================== 13 33 95.6 33 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TACATTTTCATT # Right flank : CTGCGCCTGAAGC # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [16.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 11127-10035 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVLA01000040.1 Neisseria lactamica strain 338.rep1_NLAC 322_26433_490351_60+,...,308_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 11126 36 100.0 30 .................................... GGACGGAGTGCATTTAAACAGCTAATCGAT 11060 36 100.0 30 .................................... GATACCGGCTGCTTCATTACTACGGCCTGC 10994 36 100.0 30 .................................... AGCAGAGGCGGTCGATATTTTGGCGGTTGA 10928 36 100.0 30 .................................... CAACCAGTCCGCCCATGTATGCTCTTTATC 10862 36 100.0 30 .................................... AATGAGCGCGATCAGAAAAGCGGCCAAAGG 10796 36 100.0 30 .................................... TCCAATACCTGTTTAAATGCCGATGAGAAA 10730 36 100.0 30 .................................... CTTATACACGAGCGCCGTCTTATATTGCAT 10664 36 100.0 30 .................................... ATCAGGCTTTATGACAAGCAATCAGTTAAA 10598 36 100.0 30 .................................... GGTAACACTAGCAGGCGTTATAACCTGTAA 10532 36 100.0 30 .................................... ATCTTCCCGTGCAGGCGGACTTCCTTACGC 10466 36 100.0 30 .................................... TTTTAATGTAGCCATAGTGCATCACTTTCT 10400 36 100.0 30 .................................... TCAGCCAATCGCCTACCGTTGAGACTTTGA 10334 36 100.0 30 .................................... AAAAAGGCTTGCATGTGGCATTGCTGAGTG 10268 36 100.0 30 .................................... CCAAAGATACGGATTAACACAACAAGCAAC 10202 36 100.0 30 .................................... TAGTTGACTACGATGTCCACCATATCATCA 10136 36 100.0 30 .................................... CCATTAAAGCGTCGCAGGCAATGAATGACA 10070 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : AAGGATAATGACATGCGTCATCGTAATGGCAACCGCAAATTAAACCGTACTAGCAGCCACCGCGCTGCGATGCTGCGCAATATGGCGAATTCCTTGTTGACTCACGAAACCATCGTGACAACTTTGCCGAAAGCAAAAGAATTGCGCCGCGTAGTTGAACCCTTGATTACTTTGGGTAAAAAATCATCTTTGGCAAACCGTCGTTTGGCTTTTAACCGCACTCGCGATCGTGATGTTGTAGTTAAATTGTTTGACGAATTGGGTCCACGCTTTGCTGCTCGTAACGGCGGCTATGTTCGTGTACTGAAATACGGTTTCCGTAAAGGTGACAATGCTCCTTTGGCATTGGTTGAATTGGTTGATAAAGTAGCTGATTCTGCTGAATAAGCAAATTGATATGAAAGCACTACCTGTTTAGGTAGTGCTTTTTTCATTTAGGAAGTCTCTATTTTATTTTGCAACGCTACAATTTTATTGTTTCATTCAATGGGGTGAATATA # Right flank : ACTCCAACGGGAAATCCTTATTCTATAAGGGTTTCCCGTTTTATTTTGTCTAAAAAATGGGCTTAAAATAATAATAGTTGATCTGAATTGACCCTTTTTTCTTGGGTTTTTAGCTCTCCCAACAGCAGTTTCATGGTGGCAAATTGCTTTTCTGTTACTTCCAAACAGCGGATTGAGCCTTCTTGCGGTAGGTTTGCACATAGCCTATTGTGGTGTTTTTGCAACGAATCTCGACCTTTAACAATACGGCTATATACGGAAAGTTGGAGCATTTGGTATCCATCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTGGCCGCCGTGGTAACCGGTAGGTCAAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGCAAGATTTCAGGCAATTTCAGCTGTTTGGTGTTTTTGGCGGTTATGCTGGCTTGAAATGAAGAAATCATTTTGTCGATAGCGGCTAAGGTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA //