Array 1 4132-144 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRET01000017.1 Acinetobacter indicus strain LUH5041 NODE_17_length_62790_cov_56.260983, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4131 28 100.0 32 ............................ TAATAAAAAAGTTTTTGATTATTATGAATCAA 4071 28 100.0 32 ............................ TTGTGATCCTAAAGACCCTTATGGCGGTTGTT 4011 28 100.0 32 ............................ GATGAAACAAATAATTTACTTCAACAAATACT 3951 28 100.0 32 ............................ ATTTAAGTCGGTTTCCATTGCATGAAACACAT 3891 28 100.0 32 ............................ ATCAAATTGACGGGTACATTCCTGATTGGGAG 3831 28 100.0 32 ............................ TGATCCTAATTGTAAGGAGGATTTAGTTAATC 3771 28 100.0 32 ............................ TTATGGCGGTTGTTATACTCCTCCCAATCAGG 3711 28 100.0 32 ............................ TCTGATCCTTTTAAAACTCTTCAAGTTCAATA 3651 28 100.0 32 ............................ TCCAATAGAACAAGGTTGTAATGGTGCTGATT 3591 28 100.0 32 ............................ TATTTAAATCCTGAGCAAGCTTGTCGTTCTAT 3531 28 100.0 32 ............................ ACCAGTTTGTAAGAGTCTGAGGAAATGAAATT 3471 28 100.0 32 ............................ TTTCTGTAATGATGTGAATAGATCGGAAAGTT 3411 28 100.0 32 ............................ ACCGTTTACGTTTGGGCAAACTGTAGAGATAA 3351 28 100.0 32 ............................ TGTCATATAATTTCCCTGTTGATCAATAGCCA 3291 28 100.0 32 ............................ TATTGAAATTGACTGGCGCAAATGTCCTGATG 3231 28 100.0 32 ............................ TTCACGACGTACTAATAAAAGCTTTGGAAAAA 3171 28 100.0 32 ............................ TGCTGATGAAGCTGCTGCTGAAAAAGCCAATG 3111 28 100.0 32 ............................ TTCTGCTGATCCAAATGATCCAAATGATCCAA 3051 28 100.0 32 ............................ TTCTGCTGATCCAAATGATCCAAATGATCCAA 2991 28 100.0 32 ............................ TAGCAAGTACACAAAAAGGCTTTCTAAAGAAT 2931 28 100.0 32 ............................ GACTATCGAAAAGCTCACTGAGTTAAATCTAC 2871 28 100.0 32 ............................ AATCCGCAGTGTCCATGCGTGACTCAGAAACC 2811 28 100.0 32 ............................ TTTATGCTCAACGTTTGGCGCTCGATTCCCAC 2751 28 100.0 32 ............................ TTGTTACCATTGAGAAACTGATTTCTGCTTCT 2691 28 100.0 32 ............................ TAATTCTGAAGCTGCAAAAGAAAGGTCAGAAA 2631 28 100.0 32 ............................ AACGGTATTACCTTGCGATTGATCAAGTGGTA 2571 28 100.0 32 ............................ ATTGGCGCATCACTGCAATAATATTTAAATGA 2511 28 100.0 32 ............................ ATACCAGCTGCCGAGCACCTTTAAAAGCAACT 2451 28 100.0 32 ............................ TCCAGGGTAATACCCATGTTTTCAGTTTCTTC 2391 28 100.0 32 ............................ TCTATGCCTTCATCTAGGCCATCTGTCACAGA 2331 28 100.0 32 ............................ TGGAAGAAAAATATAAAGACTTAATTGTTAAC 2271 28 100.0 32 ............................ ATGAGCAGAACCTTGAGCTATACAAAGAGATT 2211 28 100.0 32 ............................ ACCACACCAAAAGCCACCAACGTCATCCCAAT 2151 28 100.0 32 ............................ AGCGTGTTAATGAAGATCACGATTTAAAATTT 2091 28 100.0 32 ............................ ATCGATTTGGCTAATCATGGTATCCATTTTAC 2031 28 100.0 32 ............................ AAAAAGCCCGTTCAGGACTACGATACAGGACC 1971 28 100.0 32 ............................ ATTAGAAACATTAGATAAAAAATCTAAAACTT 1911 28 100.0 32 ............................ GTTCAGAAACAGCAGCTTGCCACGGATCACGA 1851 28 100.0 32 ............................ TACCAATTTATTCGAATTAATCAGATTCCAAA 1791 28 100.0 32 ............................ GAACGGGTGGCGACATGGGGTTTTATGAAATT 1731 28 100.0 32 ............................ ATTGCAGTCACTTTGCTTGATTACTTCGATGA 1671 28 100.0 32 ............................ CATCTTCAACACCTCAACCTGTTGTCGTTTCT 1611 28 100.0 32 ............................ TTTTTCAGCATTGTTTGTATAAGCAACAAACT 1551 28 100.0 32 ............................ GACCTAAAGCCTATGGCAAATTTGAAGAAGTA 1491 28 100.0 32 ............................ ATTAACAAACAACGGTGTACCGCCTGTATTCC 1431 28 100.0 32 ............................ CTCATTTTTAAACTCAATTGAGGCCAGGCGGT 1371 28 100.0 32 ............................ AAGAAAATGACAGAATCTGATCTTAACTGGAT 1311 28 100.0 32 ............................ AGTGGCGTTACAACTGTTTCGGCAATCGGTCT 1251 28 100.0 32 ............................ ACACAATGCGTAAATTTAATTGTTTGTCACGG 1191 28 100.0 32 ............................ ACGGCGATTGATGGCGCGGCCCGAATTTATCT 1131 28 100.0 32 ............................ TGAATGTCAGTTAGACATGGATACAATTTATT 1071 28 100.0 32 ............................ TCAGTAATAGATGTACCATCTGCTTGAGGGAT 1011 28 100.0 32 ............................ TGTTCTTGATGGGTATAACCAAAAGTTTCAGG 951 28 100.0 32 ............................ CTTTTAAAGAAATATCCATATCTTTCTAAATA 891 28 100.0 32 ............................ GTAGAACAGGGCCGCGATGCGAATGCTTGGCT 831 28 100.0 32 ............................ GTGACGCAATTTGCATGAGTTTAGAAACCCTG 771 28 100.0 32 ............................ ATTTTGACCGTATGTTATTTCTTTTGCGTTTA 711 28 100.0 32 ............................ TTACCATGAGTTTTGTTTTAGGCGCGGTTCTG 651 28 100.0 32 ............................ TGATAGTCTACAGATCCGGTTGTATAGTAAAT 591 28 100.0 32 ............................ GCTCGCTAAATGATGGTCAAGGTCGCGCCAGA 531 28 100.0 32 ............................ TGGCCCGGGTCATTGAACGGTGAAACAACGCC 471 28 100.0 32 ............................ AAAGCTTAAAGAAGCCTTAAATAATCTTGAAA 411 28 100.0 32 ............................ AACAAAAACAGGTATTGAAGTTCGACCAGCTT 351 28 100.0 32 ............................ ACTCTGAGTCGAAAATTTTGTTTCCTGCTTGG 291 28 100.0 32 ............................ ATATTTATTTGTGAAACTGGCATTATGTACCG 231 28 100.0 32 ............................ ACCATTTGCGCCAGAGTGGACTTTCCTGATCC 171 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 67 28 100.0 32 GTTCACTGCCATATAGGCAGCTTAGAAA # Left flank : AAAAATGGCTCAGCCAATATTTGGATTATGTGCATATTAGTTCTGTTAAAACTGTGCCATTAGATAAATTAACCGGTTATGCAGTTTATAAACGTAAGCAAGTGAAAAGTAGTGCGGAAAGACTTGCTCGGGCGGAAGCTCAAAAAGGCCGTTATGATTACGAAAATGCGTTGGCACATTATCGGAAGTTTATTAAAACAACGAACTTACCATTTATTAATATGCTGAGTGATAGTAGTCAGAATACAGAGTTTATTCAGAAGCATGCATTTAAGTTATTTATTGAAAAACTTCCCGCTGAAAAATCTGAAACTCAGGTTTTTAGCACCTATGGTTTAAGTTCGGAAAGTGCTGTACCTGAATTTTAACCCAATATTTTTTTGATTCTTTAACAGCTTAATAAAATCAATGAGTTATGATAGTGAGTTGAAACTTGGGTCTTTTATGGGTTTTGGGCTTTAACTTACTGTTATAACTTTATTTTTTGTTTTAAAATTACT # Right flank : AAATATTAGCCTAGAGGCCATTGCTGTCCCACAATTTTTCACAAGAGGAAGCTCATTTGAGCTTCCTCTTGTTTTATGGGTATTTTATTGGGTGAAAATAAAGCTTTTAAAGTTCTTCTTTCAAACAAATTCACTTGAATTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 39911-37062 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRET01000028.1 Acinetobacter indicus strain LUH5041 NODE_28_length_40062_cov_54.099462, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 39910 28 100.0 32 ............................ TTTCTGAGTTCCAACCTAAGCAACAAGAGTCT 39850 28 100.0 32 ............................ TAACTTTAGCTCTGATGCGTTATCTCTGGAAG 39790 28 100.0 32 ............................ GCCGCGTAATTCTTCAACATCAGCACGACCAC 39730 28 100.0 32 ............................ TGTGAATTTAAAAACCGTACCAATGGCTTGCG 39670 28 100.0 32 ............................ GTTCGCAAAGTTTTTTACATTGCCATGTTGAT 39610 28 100.0 32 ............................ TAAGAAAACTGGAGCCTAGACATGGATTTATG 39550 28 100.0 32 ............................ GCATTTCTTGCACTTATAAAGGTACTGTATCA 39490 28 100.0 32 ............................ AGGATAAAGCATTTTTCCGAGTTGCATTCCCA 39430 28 100.0 32 ............................ CGAAAAAATCAACTAAAGAATGCAGCTTTAAC 39370 28 100.0 32 ............................ AGTCAATCGAAGTGGTACGCGCTGAAGTTCAA 39310 28 100.0 32 ............................ AATTAATTTAACCGCCCAAAATGATGCTAGTG 39250 28 100.0 32 ............................ TTTACGTTCTTCTAATGAGTTGAAGCGTTTTA 39190 28 100.0 32 ............................ AAAAGCAGGTTGATGCTGCAGATAAGTTAATT 39130 28 100.0 32 ............................ ATCCGTATGAAGCACTACCAGGGTGGCTACCT 39070 28 100.0 32 ............................ ACGGCGATTGATGGCGCGGCCCGAATTTATCT 39010 28 100.0 32 ............................ TCACTGATCTGATAAGCGCCGTTTACTGTAGC 38950 28 100.0 32 ............................ TATTGAAAAGGGCTGTAACGGTGCTGATTACT 38890 28 100.0 32 ............................ TTTGACAAGCTTCCGTTGGAGTACTTCCGCCA 38830 28 100.0 32 ............................ TATTAATACTAATAAAGTTCAAGAATGCTGGT 38770 28 100.0 32 ............................ TTACGGTGGTTGTTTCCAGCCGGCTGATGATG 38710 28 100.0 32 ............................ TTTAAGAATCAGTTGTAAATCGACAAATTCAC 38650 28 100.0 32 ............................ TTTCCATGAGTTTTGTTATAAGCGCGGTTCTG 38590 28 100.0 32 ............................ TCACGAACATAAAAGCGCATAAACAGACGGTT 38530 28 100.0 32 ............................ TGTAAAAAAATCATGGTTCCAACGTAACATGC 38470 28 100.0 32 ............................ AAACTGGTCTTGTACTTCAGCATAAGAATAGA 38410 28 100.0 32 ............................ ATAACCTGAACCCTTGTGCTCATCGCAAAAAT 38350 28 100.0 32 ............................ ATTTGCAACATACACAACAATCGGCATTTGTT 38290 28 100.0 32 ............................ CATGTAACATTTCGACCTAGAGTAGTATCATA 38230 28 100.0 33 ............................ CTGTTCCAGCGTTTCTGAATCCGTCGAGCGCTC 38169 28 100.0 32 ............................ CTGTGGATAAGTCGGATAAAACACCAAATTAA 38109 28 100.0 32 ............................ ACATCACCATCCTGAATTTGCTGGATAGTGTC 38049 28 100.0 32 ............................ CACTCATGCACGGCAATCTTGTAATTTTGATC 37989 28 100.0 32 ............................ TTCTTGAAATAACTCATTTATTCTTTTCATTA 37929 28 100.0 32 ............................ GGACAGCGCAAGTGGGTACAGATGAAATAGAG 37869 28 100.0 32 ............................ ATCAAGGTGGATACTGGATGTATTGGCAGTAA 37809 28 100.0 32 ............................ TTTGATAGCAGTATATACAGCACCATGCCACC 37749 28 100.0 32 ............................ TTCCTTGTCGTACTTGTAAAACATGCCGTGAT 37689 28 100.0 32 ............................ AGGCATATTATTAAAATTAGTATTTCTTAAAT 37629 28 100.0 32 ............................ GTAAACTCAAACGCAAGACGCGAAAACTCTAA 37569 28 100.0 32 ............................ GTATTGGATTTTTCAGCACATAGCGGGCAATG 37509 28 100.0 32 ............................ AACATTGTCAGCTAATTCGCCAAACTCAGAAA 37449 28 100.0 32 ............................ TATGATGATGGCGTGGGCGTGTGGACCATCGG 37389 28 100.0 32 ............................ AATAAAGTTTGGTGTTAAAGGTGGTGGAGTTT 37329 28 100.0 32 ............................ TTCCAGGATATTAGACAGACGTTTGACAATAA 37269 28 100.0 32 ............................ AGCCAGGTCGTAATTAATGCGGATGACCTAGT 37209 28 100.0 32 ............................ CAAGTGTGACTGCGCTCATTGGAAGAACTCTA 37149 28 100.0 32 ............................ TTCAAACGGGACTAGTACCGTTGAACGGGACG 37089 28 92.9 0 ............G...........A... | ========== ====== ====== ====== ============================ ================================= ================== 48 28 99.9 32 GTTCACTGCCATATAGGCAGCTTAGAAA # Left flank : CTCATGAAATACGGTATTCTGATGTGACAAAACCTGAATCCTGGTCGTTAAAGTGTTTGTTTGCACTCATATTTTAACTGTTAGGACTCAGGTTTTTTTATTTAAAGCAAACTATGGGACAGCAGTGGCCTAGAGGCTGGCTTGCGGAAGA # Right flank : CACCCAAAATAAAACCGGAGCATTGCCCCGGTTTTATTCTTCATCTATTTATTCTTCTAATAGACTTCTTAACATCCAGGCAGTTTTTTCATGTACTTCCAGCCGTTGGGTTAGTACATCCGCAGTTGGCTGGTCATTGGCTTCTTCCACCACATTAAAAATACTGCGTGCGGTCCGTGCAACTGTTTCATGGGCACGAACCAATAACTCCACCATTTCATTGGCTTTTGGTACACCTTCGACTTCTTCAATTGATGCCAGTTTCACAAATTCTTTATAGGTACCCGGTGCCGGAAAACCCAGCGCACGAATCCGCTCGGCAATAACATCCAGCGCATTCCATTGCTCGGTATATTGGGTCATAAACATGGTGTGCAGACTGTTAAACTGCGGCCCGGTCACGTTCCAGTGGAAATTATGGGTCATTAAATACAGGGTATAACTGTCGGCCAGAAGTCGGGAAAGTCCTTCAACAATTTTGGCCCGATTATCTTCAGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //