Array 1 2366-1199 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRPD01000007.1 Pseudomonas aeruginosa isolate 301, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2365 28 100.0 32 ............................ GACAAGAAACTGTTGGCCGAGCATCGGCACCG 2305 28 100.0 32 ............................ TGCAGCGCCGCGAACGGCAACGGCGGCGACGG 2245 28 100.0 32 ............................ TGGAACGCATTGCCTGCCTGCGTAAAGAACTC 2185 28 100.0 33 ............................ TGTGCCGTCCGCGATCTGGCGGATTGCCGGCTA 2124 28 100.0 32 ............................ AATCTGAAACGCATTGGCGAAATACACCACCG 2064 28 100.0 32 ............................ ACTGTTCGAGTCGCGAATGACTCGGTGAACTA 2004 28 100.0 32 ............................ AGAACGAAAACTGCTAGCGGCGACGATACCCG 1944 28 100.0 32 ............................ GCCCACCAGCTCAGTCCAGGCGCTGCCGGAAT 1884 28 100.0 32 ............................ ATGCGGATAAGGCCCGCAGGCGCCGAATTGGC 1824 28 100.0 32 ............................ CAGCAGCGGCTCCAGGAAGAGGGGCGCTGCCT 1764 28 100.0 32 ............................ AAGAGTCGCGGCGACAACTACCAGACGTCCGC 1704 28 100.0 32 ............................ GTATGGCTCTCTCCATTGGGGTGGCGATACTC 1644 28 96.4 32 .......A.................... GATCTGGGGCGGCATCATCACAGCAGAATCTA 1584 28 100.0 32 ............................ ACAACATCAATCGCCTGATGCTGGGGCACCTG 1524 28 100.0 32 ............................ AGCTTCGGCACCCTGATGCGCGCCGTCGAGGG 1464 28 100.0 32 ............................ AATGCGGTCCTGCGCATCCGAACTGGTAAGTG 1404 28 100.0 32 ............................ GACCCCCGGAGGACCAACCGTGGACAACGACA 1344 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 1285 27 92.9 32 .....................A..-... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 1226 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 268-1016 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRPD01000072.1 Pseudomonas aeruginosa isolate 301, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 268 28 96.4 32 ..C......................... TAGCTGATCAGCAGGCCGACAGTCAGGCCTGC 328 28 100.0 32 ............................ TACCCGAATACGACTTGCGCGAGGAAGACGGT 388 28 100.0 32 ............................ AGCATCGCATCAAATCGTGCAGAACACGATAA 448 28 100.0 32 ............................ TGGTCGAGCAGTTCGGCAAAGGGGCCGTGGTT 508 28 100.0 32 ............................ TTCACCTGGTCGCCGGCCAGGCTGATCACTGC 568 28 100.0 33 ............................ TACAAGGTCATGGCGCTCGGCAACGTGGTGGAA 629 28 100.0 32 ............................ GCTGTGCGTCGCCGTGGTCTGACGGTCGAATC 689 28 100.0 32 ............................ AGCAGATACCCGAACCACTGGAGGTACATGCA 749 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 809 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 869 28 100.0 32 ............................ AGACAATCCGGACCTGCCGCCCAGGACGATCT 929 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 989 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGTCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 8277-7709 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRPD01000101.1 Pseudomonas aeruginosa isolate 301, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8276 28 100.0 32 ............................ AGGTCGAGGTGGGCTCGGCGGCGATGATCGAT 8216 28 100.0 32 ............................ GGTACGTGGTTTCGACCAACAGCACTGCCCAA 8156 28 100.0 32 ............................ TAAAGGAGATTGCCATGCTGATCAAACTTCCC 8096 28 100.0 32 ............................ GTCAGGGTCGTGCATGACTCCGATGTGGTGGC 8036 28 100.0 32 ............................ CGTCCAGAACGTCACACGCTCGCCGTCGATGT 7976 28 100.0 32 ............................ AACCGGAGCCTTCGGGCCGCGTTGGGATCCAC 7916 28 100.0 32 ............................ TTGACTGCTGGGGCCTGACGCTCATCGCGCGG 7856 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 7796 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 7736 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //