Array 1 257327-257475 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHQM01000012.1 Cronobacter sakazakii strain MOD1-comp19 COMP19_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 257327 28 100.0 32 ............................ CATTGCCTCGATAACCTGCAAATCCCCCTCAC 257387 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 257448 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGAATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAGCGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : ATCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGCAAAACCACGTTTGCCGGTAAGAATGCCACGACCTGGGGGTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAAAGCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCCGAGCAGCGCGCGGCG # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 201038-201615 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHQM01000004.1 Cronobacter sakazakii strain MOD1-comp19 COMP19_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 201038 29 100.0 32 ............................. GAAAAACAGGTGGGTTTTGCCTGTGAGTGTGA 201099 29 100.0 32 ............................. CAACTCGCACACGTCAGCGGAGGAACGCGCTC 201160 29 100.0 32 ............................. AACCGGATAGACAGTTAAATACCAACTATCTA 201221 29 100.0 32 ............................. CCCCTTTGTTTTACCGAGGCTAAATGCCCAGC 201282 29 100.0 32 ............................. AACTTTCCCGCGATTACAGCCAGGTGAGCTAC 201343 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 201404 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 201465 29 100.0 32 ............................. GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 201526 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 201587 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : GCTGCGCGACTCGCTGGCCCGTCTCGATACCACTGTTCCCCGCGCGAGCGGGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 302363-301357 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHQM01000016.1 Cronobacter sakazakii strain MOD1-comp19 COMP19_contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 302362 29 96.6 32 N............................ CGCGATATTATGATCATCACCGGACGGCGCCC 302301 29 100.0 32 ............................. AGAAAGATCAAAATTGCCGGCAACCAATTCTT 302240 29 100.0 32 ............................. CAGCATAACCGGATCTGTCGTCTGGCCGTTCA 302179 29 100.0 32 ............................. GACTCGTTGCTTGTCATTCAGCGGGCATTCAC 302118 29 100.0 32 ............................. CAACGATTTATCCAGGACGAAGTACACAAAAA 302057 29 100.0 32 ............................. GTACCGCCGCCAGTCTGAGTTGTATTTCTGCA 301996 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 301935 29 100.0 32 ............................. CCGAGCGCCTTTACATCCTTGCCAGTCGGCTC 301874 29 100.0 32 ............................. GTTAATTGCCCGCAGTGCGGGCACCTTTTTGA 301813 29 100.0 32 ............................. AACCCGGCACTGACAGCCGCCAATGAGTGTAT 301752 29 100.0 32 ............................. AAATCTGCATGTTCTGCGGCGAGCCAGCATCG 301691 29 100.0 32 ............................. TTGCCGAACGCCACCCAGATAATTTCCGTGCC 301630 29 100.0 32 ............................. ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 301569 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 301507 29 100.0 32 ............................. CCGCCTGCGTCCTAACCGGCCTGTAGGCTTTT 301446 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 301385 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : AAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCTAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAATATATAGTTTTAGAGTGTTCCCCGCGCGAGCGN # Right flank : ACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTACTGAACATGAATAAAACCATTTGCACCTTACTTACTACTGTCGCGTTGTGTAGTACTACCGCTGTTGCCAATGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGTACATGGGGTGATCGATTGTATGGTGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 329342-328459 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHQM01000016.1 Cronobacter sakazakii strain MOD1-comp19 COMP19_contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 329341 29 100.0 32 ............................. GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 329280 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 329219 29 100.0 32 ............................. GCTGCGCGACTCGCTGGCCCGTCTCGATACCA 329158 29 100.0 32 ............................. TCAGTTTCCCGGAGGCGAGCGCCCCTTCAAGC 329097 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 329036 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 328975 29 100.0 32 ............................. GGTGTGAAGCTGTTAAGCGTTTTTGAAGATCT 328914 29 100.0 32 ............................. GAGGAACGCCGCCAATTTCAGGAATGTATTTT 328853 29 100.0 32 ............................. TCGTCGAGGGTTATTTGCATGGCGGCTCGGGG 328792 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 328731 29 100.0 32 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATCG 328670 29 100.0 32 ............................. GCGCGACGTATCGCACCGTTGCGCAGGATACC 328609 29 96.6 32 .....A....................... TTTTCGAAATTGAGCATATTTAACCTATGATT 328548 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 328487 29 93.1 0 .C.............C............. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.1 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GC # Right flank : AACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //