Array 1 2074959-2074686 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046268.1 Vibrio spartinae strain 3.6 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2074958 29 100.0 32 ............................. TGGCTGGCCAAAGAGTCCATTGCGCGGCTTGG 2074897 29 100.0 32 ............................. ATCTTTTTTTCTGTTAAAGACCTTCTCTTTAT 2074836 29 100.0 32 ............................. TCTTTGATCGACTTGGTAGAGAAGTTGAAACG 2074775 29 100.0 32 ............................. TTGCTTCTAAAGTAAGATACTCATACGATATT 2074714 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGTTCCCCGTACACACGGGGATGAACCG # Left flank : TTTGGGCGAATTGGTGATCGTAAGGGATGGTTTCGTACATAGGTTGTAACCTCTGTTTGCGATGAAATTCAAACCACCACGCAAAGGTTCCTAATCTTTAGGTGGTGAACTAGACAAGGTTAGGAACAACCGCTCGCAATACACGGTGCGCCGAAGCGCCCTAGCCTAGCTCACCAAAGTGGAAGTGTGCCAAAGCCCAACGTAAAAATCTAGCAAAGAACAGATTTTTACGTGTATGCGAACAGAATGCGGGGTTCCTAATCCCAGCACCGGATTTTGCCAGTGCAGAGGGTAGGTTATTTGTTTTTGGGAAATAAAAAGTATTAAAAAAGTATGAGATTTTGGGTGTAGGTTCTCAAAATAATCAGTCGATGGGCATCTGAAATTGATAAAATTCAATCCAGTTACAGCGCTTCAAAAAGATGAGTTTTGCTCTTTAAAATGTTGGTAGATTGTTAATGATGAAATTTCTTTTTATTGATCAATGATCTATATTTAGA # Right flank : GACTGTTCCACTTTGTCAGTGCCATTATTAATGAGCGCGGTGAGCACTATCAGATAGACTACCTGCCGACCGGCCATGTGCAGCGGGAAGTGACGTTTGACGGTCGTCAGTTTGTCTATGAATATGACGCGCACACCCAACTGACGGCAAAAACAGAAATCGGCAGTGAAGGCACCGAGCTGACGACCCGTTACGCGTATGACGCACAGGGCAAGCTGATTGAGAAGACCCTGCCGGATGAATCGACAGTTCAGTACAGCTATGACTTACTCGGCAATCTGACCGGTGTGGATGATGGTCGGTGGCCGCTGGCGTATGACTATGATGTACTGGGCCGGCTGACCACCGAGCATCAGGGCTGGGCAACCACCGGTTATCGTTACGATGCGCTGGGCCACATCACGGCTCAGTTACTGCCGGACGGCCAGCAGCTTGACTATGACTTCCGGCATGGGCGGCTGCATCAGGTTAATCTGAACGGTCACTGCCTGACACAACAC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACACACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2089146-2088995 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046268.1 Vibrio spartinae strain 3.6 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2089145 29 100.0 32 ............................. CAAACGCCAGAACGAGCGCATCGACACGGCAA 2089084 29 100.0 32 ............................. AACATAAACGCGGCTACCTAAATCTCGTTCAG 2089023 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTGTTCCCCGTACACACGGGGATGAACCG # Left flank : CTTTTTGGGCGAATTGGTGATCGTAAGGGATGGTTTCGTACATAGTAGACTCCTAGAGGATGTAGAGATAATTTCACCACGGGAGTTCCTACGCTCGGGTGGTGAACTGGAACAAGAGTAGGAATGCCGCCCTCTAGGTACGACTAGCCGAAGCCGCCTTGCCCAGCTCACCATAATTCAGATGTGCTGAAGCCGCATATAGTAAAAAACCAACGTAAAGTTAGCAACCTATAATGCTAGAGGTTATTTGCGGGTTCCTACGCCCGGCACCGGATTTTGCCAGTGCAGGAGTTAGGTTATCTGATTGTGGGAAATAAAAAGTATTAAAAAAGTATGAGATTTTGGGTGTGGGTTCTCAAAATAATCACCCGATGAGCATCTGAAATTGATAAAATTCAATCCAGTTACAGCGCTTCAAAAAGATGATATTTGCTCTTTAAAATGTTGGTAGATTGTTAATGATGAAATTTATTTTTATTGGTCAATGATCTATATTTAGA # Right flank : GATCTCCGAGTATCAGGATAACGCGACCCCATACTTCTACCACCTTGACCAAATCGGCACGCCGCTGGAAATCACCGATGCAGAAGGCGGTGTTGCCTAGTCGGTGGATTACCACAGCTACGGCAATGTGGCTTACCAGCGCAAGGCCGAAATCGTCAGCCCGCTCCGTTTTCAGGGGCAGTATTACGATGCAGAAACGGGTTTACATTACAACCGGCATCGTTACTATAGCCCGAGCACTGGCCGCTTCACCACCGCAGACCCAATTGGACTTGCAGGTGGGTTGAATAACTACCAGTATGTACCGAATCCTACGGGATGGGTGGATCCGCTGGGGTTGGCGCAGTGTCCAGGGGATTGTCCTACTAACATTGTTACAGATATAGATGAACAACCAGCTAGTGCTCCTTTTTCGAAAGATGCTAATGGTCGTTGGCATGATAAGAAAGGTAGGTTTGTTTCACAAAACTGGCCTCCTAACGATGGGTTTGCGACAAGAC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACACACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2105151-2104878 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046268.1 Vibrio spartinae strain 3.6 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2105150 29 100.0 32 ............................. TGACGATTGTAAAAAGGACTGGCCTGAAACGT 2105089 29 100.0 32 ............................. CACACCATTGTAGTAGCGCCCCGTGAGGTTTT 2105028 29 100.0 32 ............................. AACCTTTCTGCTTGCTCACGGCCATTGACCTT 2104967 29 100.0 32 ............................. ATGGTTTCTGCATACATGCGATCAGAGTTTAC 2104906 29 93.1 0 A...........................T | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGTACACACGGGGATGAACCG # Left flank : CGGGCTTTTTGGGCGAATTGGTGATCGTAAGGGATGGTTTCGTACATTGTAGACACTCCTATGTAGTTGATAAATCACCACACAAAGTTCCTACGCTTTGGGTGGTGAGCTGGAACAAGGGTAGGAACTACCGCTACATAGGAAACGGTCTGACAAGAAGTCAGCCTTGCCCAGCTCACCATAATCTGAGAGAGCTCAGGCTACACATAAAGTAAGATCAGCACAAGACTGAGTCATGCTCCTATATATCGGGGTTCCTACACCCGGCACCGGATTTCGCCAGTGCAGGAGTCAGGTTATCTGATTGTGGGAAATAAAAAGTATTAAAAAAGTATGAGATTTTGGGTGTGGGTTCTCAAAATAATCAGCCGATGAGCATCTGAAATTGATAAAATTCAATCCAGTTACAGCGCTTCAAAAAGATGAGTTTTGCTCTTTAAAATGTTGGTAGATTGTTAATGATGAAATTTCTTTTTATTGATCAATGATCTATATTTAGA # Right flank : GACTGTTTCACCTTGTCAGTGCCATTACCAACGAGCGGGGTGAAACTCACCGTATCGGTTACTACCCGAATGGTCTGGTACAGACGGAAAACACTTTCGACGGTCGGATATTCAGCTATGAATACGACCTGTTGGGGCAACTGACTAAGAAGACAGAAACCGGCACCGCAGGCACCGCGCTGACGACTGAGTTCGAGCGCGATGTGATGGGCCGTCTGGTGAAAAAGACGCTGGCCGATGGCAGCAGCATTGACTACCGCTACGATAAATACGGCAACCTGAGCGAAGTGGATGACGGCGAGCGTCCGCTGGTATGGCGTTATGACCTGATGGGCCGGGTGACTGAAGAGCATCAGGACTGGGCCTCGAACTATTTTAGCTATGATGCACTGGGGCAGGTTGAAAGCTGGCAGCTTCCTGATGCCAATGTGCTGAAATATCAGCGTGGCAGAGGCGGTGTGCTGAAGCAGATTGACCTCAATGACTCAGTTCTGACACAG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACACACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-11.70,-11.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2181131-2180862 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046268.1 Vibrio spartinae strain 3.6 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2181130 28 100.0 32 ............................ AGTCCGAGCGACACTCTAAAAATGAGCAATAA 2181070 28 100.0 32 ............................ AGCCATAACTCCCCCTTTTTATCCACCCATTC 2181010 28 100.0 32 ............................ GGCAATCGTCGGGGTGGAACCGGCTATAATCT 2180950 28 100.0 32 ............................ CTATGCAAAATTTAAAGCATGGGCCATTGAAC 2180890 28 100.0 0 ............................ | T [2180867] ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TGGGGCGCGTGCATCAGATGCCGCAGAAATTAATAAACTCATTGCGCACCAAATCACTGCACTTCAATTTTCAACCTTCCCAGCCTCCGGCCCCAAACTTTGACGCACAATCAGCGTCAGTGATTTCAGAGGCATTGGTGTCTTGTGCGCCAGTTCATCTTTCAGAGATGAAAGACGAACCAGGAAATCTTTTTTGTTTTGGCTTGGTTACGCGTTGTCCAGAACCCGCTTTTACGGGCGTCCTGCCCGGAAAAGCTTAACCATTCTTCCTTGAATGGTTTTCTTATTTCAGTGGCTGATTTGAATTGGGTGAAACATTCTAAAAGCCAATTTGATCGATGCACTCAGGATGAAATTTAAACCGTTTAGACCTTCTTTTTTTGCCCTTAAAAAATAACCAATAAAAACAATAAGCTACGAATAGGTGATTTTAACAAGGTAAAAAAGGGTTTTTGTCGCTAACCACTTGCTGCCACTTATTTTTTCGTGATATGTTCATT # Right flank : GACCAATCCCAACACGAGGGGGTTAGTTAAAAGTTCACTGCCGTATAGTGGGTAAGCAGAACTATTGCTTTGAATTGAATCGCATTTTTCCCAGTAATGTGCGTAAAGTGAGGGTTGGTGGTGTTCTTTGTCAGTCCCTTCTTTTATGCTAGCGCTATTCATCCATAACTAACCCCATATCGTGATTATGAAAACATCTCTCGATCACCTGCCTGAATATAAACAGCAAGAGCTTGCGACGATCTCGACCATTCTGCGTGATACGTTGGAAGACTATCTTGAGGGTAAGACGGGGAGTAAAAGCGAGTTTCGCATCCTGAAAATCATTCTGTTCGGTAGTTATGCCAAAGGCAACTGGGTCAGCGATCCGGTTAATGGTTATATCAGCGATTACGATATTCTGGTAATCGTCAACAAAGCTGCCTTAGTGGAGGATTATGCAGTCTGGCAGCGCGCCGAAGAGCAAATTGACCGCAAAGTGAAATCTGCCCCGCTGGGTT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 3097794-3097526 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046268.1 Vibrio spartinae strain 3.6 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3097793 28 100.0 32 ............................ TGAAAATCTCCTATGAAAAACAATCACTTATT 3097733 28 100.0 32 ............................ GCGAGCGATGAGCACCAAAATCATTGAAAAAT 3097673 28 100.0 32 ............................ GTTAAAGGAAAAGCAGGCCATGGGCAGCAACC 3097613 28 100.0 32 ............................ TGCAAGTTGATTTTTTGAGTTCCAAACACCAC 3097553 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGATGCCGAAGAAATTAATAAACTCATTGCGCCTCAAACAACAGAGCCACAATGTTTATCTCCCCAGCCTCCGGCTCCCAAATTTGACGCACAATCAGGTTCCTCAATTTCAGAAACAGCGGCATTCTGTGCGCCAGTTCATCTTTCAGAGATGAAAGACGAACCAGAAAATCTTTTTTGTTTGGCTTGGTTGCGCGTTGTCCAGAACCGTCTTTTACGGGCGTCCTGCCCGAAAAAGCCTAACCATTCTCCCGGAATGGTTTTCTTCGGCGGGTGGTTGATTTGAATAAAGTGAAACATTGAATCAACAAAGCTCAATTGATCGATGCTCTCAGGGTAAAATTCAGGGATGAATTTTAAACCATTTAGACCTTCTTTTTTTGACCCTAAAAAATAACCAATAAAAACAGTGAGATACAGAAGGGCGATTTTAACAAGGTAAAAAAGGGTTTTTGTAGCTAACATCTTGCTAGTGCTTATTTTTTCGTGATATGTTCATT # Right flank : GGAGTGACACTCAGTTGAGGCTGATGCCACTCCGATTTATTTCAATCAGCCACTGGCTTACTCATCGAGTATGATTTCTTCTTTCCGCAGATTTATTTCATCAAAGGTAATCAGATTATTGATGTACAGAAGCACCTCCCGCAGTTCATTTTGATCGATACTGGGATGCGTATTGGTGATAAGACAATCAATCAGATAGCCGCGAGCAGTCAGGTGTAAGTCGATATTTAGAGATTTAGGCATTGTAACCCTCTTGATGTGGAATATTAAAAACGATCACCACTCAGAGGTTCCTAATCAATGGGTGGTGAACTGGACAAGGTTAGGAACTACCGCCACATCAAAAACGGCCAGCATAGCTGCCTATGCCCAGCTCACCATAATAGGAGCAATAGGCTACACAGAAATATCAATCGTCACAAGATTGATAGATGAGTGTCTGATGTATGAATGGCAGGGTTCCTAATCCCGACACCGTTTTTTTCGGTGCCTGTGCAGCG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 3720700-3721144 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046268.1 Vibrio spartinae strain 3.6 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================== ================== 3720700 35 77.1 33 GC.A..G.G.G....AA.................. GAACCTCACCTGGCTTAATTGAACGGTTGATGC ATC [3720711] 3720771 35 100.0 34 ................................... TTTCTGTGTCGAAGATAGGGAACTGAGAAAGTCG 3720840 35 100.0 33 ................................... CTAACAGGAGTTCAATCGATTCGTCCATACTTA 3720908 35 100.0 33 ................................... AGGCTGTTATCCTCTAATTTAGTGTTCATATCA 3720976 35 100.0 33 ................................... TTATGTACAGTAGCCATACGGCCTCCTTAAATA 3721044 35 100.0 31 ................................... AATAAAAAAATCTTTTCATTTTTTCCTCAAA 3721110 35 94.3 0 .................................GG | ========== ====== ====== ====== =================================== ================================== ================== 7 35 95.9 33 ATCGGAAGACACTGGCCGAGACAGGCCGTTAGGAC # Left flank : GATTGGATAACCAAAGGTTGACGCTGGCCATAACTGCAACCAGCAGTAAAAGCGCCAACACCCAACGAATCACTATTGTTTGATGATTAATCATGAATAATTTATCAGTACCCAGAGCCAAATCGCGGATAAAATACAACTTTATTGCAATAATCATTAGCACACATATGCAAAAAGTTTAATTAAGTCACAAAAATATTGACTTCTATCCGATTAATGAGCTGAATGGGCAGCGCCCGGGGATGGATAACTGTCGCGCTTTTTTGTGCTCTCGCGAGTCCATCGGGAGATCGGTCAGAGTGCACAGTTCAGTATGAAAACCCTGCACACCTGGTTTAACGCTTTGAATCCAAACCAGAGCCACTGATATAATCAATACTTGTCTGACGAGATTGGCAAATGGCCGATCCCCCCTGAGAAAGGCCCAAAAATGAGGTTTTGCTATGTATATTTATACAGATCGGCCAATTTGCCTTGCTCAGCCCTTATATATCAAGGCT # Right flank : GTCAACAGATAATGATTGAATCCGGCCAGTCAGCAATGTGACCTTCACCGAGAACGTGAGAATACATCCGGCAATTGGCACACAAACGGTAAAAACGAACCTTGTCTGTGGCGTCAAGCTGCCGGTTGATTTTTTCTATAATCTGTTCGAGCTGGCGAGGGGTCTTGACCGCAATTTCAAACACCGATTCCTGTACGCGGTCACCGTAACTGAGCAAAATTTTTCCGATGGTGCGACGTACCTTATCGTCACTGATATCAAAACAAACGGCATAGATAATTAACGGCTGTGCCATGCTTCAAATACCTCCCCGCTCCGGATACTGGTGATGTAACGGGTGATCTGCTGCTGGATATGATCGATGATCGAAGACTGTGACAGCGTGACCGCTGTTTTTTGTGCGTTCAGCGCCTGCAATAAGGCTGTAAGATAGCGCTGACGTCCCTGGCTTAACAACCAGATACCACCATCCCGGGATTCAAAGTCAGCTTCCGTCAGAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAAGACACTGGCCGAGACAGGCCGTTAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.60,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 157717-157397 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046269.1 Vibrio spartinae strain 3.6 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 157716 35 100.0 38 ................................... AAAGTTTAGAAACGTCTCGTTGTGTGTGGTGTCGTCAG 157643 35 100.0 34 ................................... TCAACGTGATGGTCGTCGCATTAGGAAGGGTGTG 157574 35 100.0 36 ................................... TGGTTTGTTAGTTCTCTAGATACCCTGCAGATATCT 157503 35 100.0 35 ................................... ACTCAAAAGAATTTTGGGTGGTGTTTATCACACGT 157433 35 91.4 0 ............................C...A.A | A,T [157402,157406] ========== ====== ====== ====== =================================== ====================================== ================== 5 35 98.3 36 GTTTCAGTAGGTCTGGCCGTTTAGGCCGTTGAGAC # Left flank : GATTCAATCGGGTAAAGTTCACTATCATTCAGCGAAGCACGCCAGCCATTGAACACGCCAAAACATTGCACTGACCATTTCTGGGTTAAAGCAATATCGAATAGGTCTACACCGGTGAGTGTGTCCATCGGAGCAATCAGGGTATAGCGAGGGTTCATTAGCTATCCTTAGCAAGATCAGAAGATTATTTTCTATCATGCAAAGAAACATCACCGGGATCCAACGGTGAAATATGCAACTGTGAATCAAATCAACCATTCGCATATTTAAAATGACAAAAATAACGTTGTCCACAAGCAATCATCCTGTCATCAAGCCCCCCCACAATGCTTGCGTCATGCTGTTCACAAAAACGTTATGCAATCATTGTATTAGCCAGAAATTCCCGATATCTTATAAATTCTACTGACATTGTTCTGACAGGTGAATCTGTGGATAACTTGAGGCCATCCAAAACCGCATTGCAAGTGATTGATTTTAAACTTTCATTACGGGGGTGA # Right flank : ATTTGGCAACCGCTTCTCCGTCCGGTTGTTTCCCCCCAATTCAAATCAACCACCCAACCAAGAAAACCATTCAAGGAAGAATGGTTAGGCTTTTTCGGGCAGGACGCCCGTAAAAGCGGGTTCTGGACAACGCGCAACTCAGCCAAACAAAACAAGATTTTCTGGTTCGTCTTTCATCTCTGAAAGATGAACTGGCGCACAGAACAAGAACACCGATGCCTCTGAAATCGAAAAACTAAATTGTGCGTCAAAATTTGGGGCCGGAGGCTGGGGAATATAAAAATTGAGGCTCTGTTGTTTGAGGCGCAATCAGTTTATTAATTTCTGCGACATCTGATGCACGCGCCCCAGATACTTTTGGCGTTCCAAAAGTACCCAAAAGAACGTTTTAGTTCGTGGTCGCTGCCCGGGTCGCTTTTATTCGCTCCTGCTCACGAAAAGCTAAAAATTCATCCTTGAATTTTTACCCTGAGTCCATCGATCAAGTTGGCTTTTAAAAT # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTAGGTCTGGCCGTTTAGGCCGTTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 161410-161099 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046269.1 Vibrio spartinae strain 3.6 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =================================== ================== 161409 35 100.0 34 ................................... GATTACCTGTTGCAAGGCAATTACCTCCGCATCA 161340 35 100.0 33 ................................... GGTTACTAACCTCCGATGTTCTTTTGCTGTTTG 161272 35 100.0 34 ................................... TAGATGCCGCTGCAGATACCAACAATGGAGACTC 161203 35 100.0 35 ................................... GCTTCTCCCCCGCAGATGTGGGCTATTTCGATGGC 161133 34 85.7 0 .....................G..A.-.A....T. | T [161102] ========== ====== ====== ====== =================================== =================================== ================== 5 35 97.1 34 GTTTCAGTACGTCTGGCCGTTTAGGCCGTTGAGAC # Left flank : ACGGCTGACATTGTAGCTGCACTACGTGAATGGCTGATGGCATATGATCACATCGAGATGTGGGCCGACTGCCCGGCCTATGACTGGGTGTTATTCAGTCAACTGTTCGGCGGTTCTATGCATCTGCCACAGCCTCTCAGCTATATCGTCAATGATCTGGCAACACTACTCACCTGTCACGATATCGACCCGCTCATCTCTCGGACGACACTGCTTCCTGCTGACCAGCATCCTCAGGGGCAGCAGCACAATGCGATGTACGATGCCTACCTGCTGCGGGCTTGTGTGCAGCATTTCAGGCCACAACAATCGTGACACATATCCGGCGATACAGACCTATTCAGCTCACAAAACAATATGCAATCATTGTGTTAGCCAAAAATTTCCGATATCTTAAAAGTTCGACTGACATCGTCCTGACAGGTGAATCTGTGGATAACTTGAGGCCACCCAAAACCGCATTGCAAGTGATTGATTTTAAACTTTCATTAAGGGGGTGA # Right flank : GCACTCATCATAAACATCGATGGTGTGTTTCAGTCGGTCTGGGTTTAGAGAGAATTCAGAAGGGATTTCCAGAATGGCCTGAGGAGCGAAAACTGCCGAATCTCTCAGGCCAAAGAGATTTTTGGGGTTCACCTTTGAACATTCAAAGATGAACGAGTACACCAGATGGCCCCATATTTTTGCAACCAAATCATTATTTAATCAAACGTCCCAGCCACTTATATAATGTGACCCCTTTATGCTGAAAAAACTGTAATGACTGATCAATAAAGGCTTTCCCATTGGGGAAAATACCTCGTCCGCGTAAAGCATAATTTGCATAGCTACTGATTAAAAGCAATACAATTAAACCCGTAATGATGTGCGACACTGAACCATCAAGTAAAAGCTTTACACCTTCCAGAACAAAAATTGCTATTGTCAATATTCCAGCGATTTGGGTAAACAGTAATCCTCGTTCAGACTGTTGTTGGTCATGAAGTGACTGCATATATTGATCG # Questionable array : NO Score: 2.91 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTACGTCTGGCCGTTTAGGCCGTTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 163037-162300 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046269.1 Vibrio spartinae strain 3.6 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 163036 35 100.0 37 ................................... GTTTGGAGTGGGTAGCTGGAATACTTAAGACACCATT 162964 35 100.0 36 ................................... ATGATGGTGCATAGTATAGGACACTCAACGCGAACA 162893 35 100.0 32 ................................... ATTAATCGGAGTTGTCCGACAGAGATCTCTCT 162826 35 100.0 34 ................................... TTTTTCAGCACGTACAGTAGAGTTACTGAAAATT 162757 35 100.0 35 ................................... AGACTCTTTATAAATAAGTCTATAGTACTTAAATG 162687 35 100.0 36 ................................... TTTTTCCGCTTCAGCACTTCTTTTTTCAATTTCTTT 162616 35 97.1 35 ..........A........................ TTTTCTAGGTGCCATAACACTTGCCTCTTATAATT 162546 35 100.0 35 ................................... ATACAGACGTGGACATTGCTGTTGCTGCCACTGTG 162476 35 100.0 36 ................................... GCTGTATAGTCTTCACCAAACGCTTCCCAAATTTCT 162405 35 100.0 36 ................................... TCTTTACCCTCAAACTCTGATACCTGGCCTCGTAGT 162334 35 97.1 0 ..........A........................ | ========== ====== ====== ====== =================================== ===================================== ================== 11 35 99.5 35 GTTTCAGTACGTCTGGCCGTTTAGGCCGTTGAGAC # Left flank : GAACGACCAATTGCTGCAAAAACCATCACGAAAGGTCAATACGCCCTATAATGCTTTGACATCGAAGATGATAAGAAACGCCGCCGGCTGAGTAACTTATTACTCAGCTATGGCGAACGGGTGCAATATTCCGTTTTTGAGATCACTCTGCGCCACGACAAAGCGCTGGACGAATTGAAAAAACGGTGTCAAAAATATGTAGAACCCACCGACAGCCTGCGTTTTTACTGGCTCCCCTATGACGCCAGAAAAGGCTCATTTGACATTCATGGTAACTCAATCGCGACTTTTCCACAGGCTGAAATTCTGTAATCAAACGACTCACGGCTCTTTAACAATTCAGTTCACAAAACCGTTTCACAATCATTGTCTTAAGCGGCGATTTCCGATATCTTAAAAGTTCGACTGACATCGTCCTGACAGGTGAATCTGTGGATAACTTGAGGCCACCCAAAACCGCATTGCAAGTGATTGATTTTAAACTTTCATTAAGGGGGTGA # Right flank : AGAACTTGTTGAATGTTCAGTTTACCAAGAACAGTTTCAGTACGTCTGGCACACCATGCATCGCAAACCCCGGCCCCCGCTAACCAGAGCCCTTGCTATTTACCACAACCTTTCGTAACTTGACCTCATCATCACCATCACGAGAAATACCGCATGAGAATCTTCTTAGACACAGAATTCACCGGCCTGACCCAACATACCGAATTACTGAGTCTGGCACTCCTTGATGAGGACGGGCGGGAGTTTTACGCCGAATTTACCGAACGGCATGGGCAAAGCGTTGACCCATGGCTTGAAAAACATGTCATTCGCCACATGCACTGGCTGAATCATCCGGAAAGTCAACCTGAAGTGATCCTCTCAGCCGAGAAAACATGGCTGTTTGCGCCAACGGCTGACATTGTAGCTGCACTACGTGAATGGCTGATGGCATATGATCACATCGAGATGTGGGCCGACTGCCCGGCCTATGACTGGGTGTTATTCAGTCAACTGTTCGG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTACGTCTGGCCGTTTAGGCCGTTGAGAC # Alternate repeat : GTTTCAGTACATCTGGCCGTTTAGGCCGTTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 524902-525358 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046269.1 Vibrio spartinae strain 3.6 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 524902 29 100.0 32 ............................. TTAGGGTGTTTTTTTGCAAATTCGGGAGAAAC 524963 29 100.0 32 ............................. ACCATCACCGCGACCATGTGGATAGCGTACGA 525024 29 100.0 32 ............................. GTAACTCCTGTATGTCATCCATCATCATGTTG 525085 29 100.0 32 ............................. GTTTGATTGATCGGTTTGGTGAAAAAGAAGGC 525146 29 100.0 32 ............................. CCACTTACTACCGACGACTGAAAGAGTGGAAG 525207 29 100.0 33 ............................. GTGTTAGAGATGTGCTCAAAAAGATTGGATTGC 525269 29 100.0 32 ............................. AGGAGACGGCGCTCAATACGGGAAGTGTTAAT 525330 29 82.8 0 .......................CGTG.A | ========== ====== ====== ====== ============================= ================================= ================== 8 29 97.8 32 GTGTTCCCCGTATGCACGGGGATGAACCG # Left flank : CCACTCGGGCTCGCTGCTGAAGACTCGGTCAGCATATTTCCAGTGCACTTTGTCTGTGGATGAGTACATGGTGATGCCCGGCCCGGTACTGAATACATAGTAGGTCCCGTTTTCGCGTGCCAGCACTGGGTCATGTACTTCGACTTGTGCAGCATATGTATTCGACAATATTCCCAAGCCAAGTAGTAGTGACATGGACGCCTGGATTATTCTTCTCATGGTGTTCCTTTTGAGTTAGTCATTGGAATCATTAATATTATATGAAGAAAGTTTTATATTTATTGAGGTCCGTCTAGTTATAAGGACAGACACTTTAAGTTGCAGCCTCAGCGGCTTATTTGAACGAAGTGAAACATTGGCAAAACCAAATTTTGAGCGTACCCAACCCACGATAGTTTCGTTATCTCCGGTCTCATCGATTTACCTCGAAACTGGCGAAAAATGTTGGTAGATTGTTAATGCTGAAATTTGTATTTATAAATCAAATGACTACAATTAGA # Right flank : ATTAATCAATGTGAGCATTTTGGTATACCCCATCGTTAGTAATGGATTTGTCATTAATTTTGTAAATAAATTGGAGTGCCTTCTTGGTCTGCAACATTTCCCCCGTATAGACGAATCGGTGTGCTAACTTGATGAAACCAAATTTATTTATGGGATTAACATCTCGTGGAAGAACCAGCCTACTTCTTATACTGGGGCAAGGCACATCAAGCACCACAGCATGGTGGTGATGACTATCATCTTCTACCCTATCACAGCCTTGATGTTGCAGCGGTCGGGCAGCAATTCTTACATCCTGAAAAACCATTAACCTGCGAGCTGGCTGCTTTTCTAAATATCACTCCTAGTCAGCTTAATCGTCTGTTTACTTTTGCGCTTGCTCTGCATGATCTAGGCAAATTTTCCTCAGCTTTTCAGGCGTTATATCAGCCTCCGGGGGCTTTTTGGTTACCAAATTGCCGCCGGACATATGATGGCAGCATGTATCGACATGATCGATT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 534446-534711 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046269.1 Vibrio spartinae strain 3.6 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 534446 29 100.0 32 ............................. CGATAGTCACCGACTATCTCGAATGCTGTAAA 534507 29 100.0 32 ............................. TCTGTCGATAGTTCGGGATATGTTTTCTCTTA 534568 29 100.0 32 ............................. TAAAAAATCTTATAGATAGCTTAGACTCAATT 534629 29 100.0 25 ............................. GGATACAATGATGCATGATGCAACA 534683 29 96.6 0 ...........................A. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 30 GTGTTCCCCGTACACACGGGGATGAACCG # Left flank : TACGGTGATGCCGGACACAGGAGTAAATAGTCGTGAGTATGTTGGTTGTTGTCACGGAGGCTGTCCCGCCACGCTTACGTGGCCGATTGGCCGTGTGGTTGTTGGAAGTGCGAGCTGGTGTGTATGTCGGTGATGTTTCTAGAAGAATACGCGAGATGATTTGGGAGCAAGTGATTCAACTTGCTGAAGAGGGCAATGTGGTGATGGCATGGGCCACCAATACTGAATCTGGTTTTGACTTTCAGACGTATGGAGAAAACCGTCGAGAGCCGATTGATTTTGAGGGGTTGAGACTTGTGAAATTCAAGCCGCTAGAAAGTGAGCTATAAGGGCAGACACTAAGTTATAAGGACAGACACTATAGCGTCCAAATATAGCGTCCAAGTCCTCGATAGTTTTACCATTTTCGGTTGGATCGATGAACGTTAAAACAGACAAAAAATGTTGGTAGATTGTAAATGTAGAAATTTATATTTATAAATCAATTCACTACAACTAGA # Right flank : GGGTTATGAGTTATAAGGACAGACACTTTAAGTCGGTGGGAAAAGAAAGGAGGGTTATCGGGTTACCCCTCCTTTTTTCTGATTATTTGCCTAGTTTGGGTTGAGTAAAGCCACCGTAAACATCGAGACGGCGGTGACGTAAGTTCGTCACGGATCCTTCGGTATTCAGTTGCTTCAATTTATCTAGATCAACATCGGCGAAGATGATCATCTCTGTGTTCGGACTTGCTTCGGTGATTGTTGCATCGTGTGGGAAGAAGATATCGGATGGTGAAAATACCGCAGATTGTGCGTATTGAATATCGACATTGTCCACACGTGGTAAGTTACCGACACTGCCTCCAATTGCGACATAACACTCATTTTCAATGGCTCTTGCTTGTGAACAGAGACGGACGCGTTGATAGCCATTTTTGGTGTCGGTCCAAAACGGCACAAACATGATTTGTACATCCTTTTCTGCCATCATTCGGCCAAGCTCAGGAAACTCACTATCGTAA # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.09, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACACACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-11.70,-11.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 719471-719323 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046269.1 Vibrio spartinae strain 3.6 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 719470 28 100.0 32 ............................ TGTATCAAAAATGTTGAAGGTACATGTGATAC 719410 28 100.0 32 ............................ ATGATTAACAAAACCATACTTGCAGAACACAC 719350 28 96.4 0 ...........................T | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GACTCAGGGTGAAAAATCAGGACGATTTTTCAATTATCCCCTAACAAAAAATCTTGAGCAGGAGCGAATCAATCCGACCCGGCCAGTGTCCACGAACTAAACCGTTCTTTTGGGTACTTTTGGAACGCCAAAAGTATCTGGGGCGCGTGCATCAGATGCCGCAGAAATTAATAAACTCTTTGCGCACCAAATCACCACACCTCAATTTTCAACCTTCCCAGCCACTGGCACCGAAGTTTGACGCACAATCAGCCTAACCATTCTTCCATGAATGGTTTTCTTATTTCAGTGGCTGATTTGAATTGAGTGAAACATTACAGAAGCGAAGCCAACTTGATCGATGGAATAGGGGAAATTTAAGGATGTTAGACCTTCTTTTTTTGCCCTTAAAAAATAACCAATAAAAACAATAAGCTACGAATAGATGGTTTTAACAAGGTAAAAAAGGGTTTTTGTGGCTAACCTCTTGCTAGTGCTTATTTTTTCGTGATATGTTCATT # Right flank : ATTCGGAGTGGCTGCTTAGCTGAGGCTGCACCACTCCGGTCTTTATACTTGGTTCAATCCCACACGCACTTATTCATCAAGCATTATTTCTTCTTTCCTCAGGTTCATTTCATCAAAGGTGATCAGATTGTTGAGAAACAAGAGAATTTCCCGCAGTTCAATTTGGTTGACACTGGGAGCAGTATTGGTCACAAAAAAATCAATCAGATAGCTGCGGGCGGTTAGGTGTAGATTTTGGTTAGGTTGTAGATTTGGCATCATTGCTTTCCCTCTGAGGCGTGATCGATTCACCACTCAAAGGTTCCTAATCTTCGGGTGGTGAGTTGAACAGGGTTAGGAACTACCGCCTCAAAGGATTACGGCCAGCTAACGCTGCCCTGCCCAACACACCATAATTGAGAGGTGAAAGGCTACACATAAAGACTATCTTGTACAAGATGACATTTTAGTGCCTTTGAGAGTTATACGGGGTCCTAATCCCGACACCGGATTTTTCGGTG # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 7 725955-725807 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046269.1 Vibrio spartinae strain 3.6 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 725954 28 100.0 32 ............................ TCTCATACCTTGTCTTATTGCATCAAGCGCGG 725894 28 100.0 32 ............................ GTCAGGCGCGTAAATCGCCAGTGATTCAGGTT 725834 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CTGGGGCGCTTTCGAAGAAGTTAATGAAATTGAGGAATGAGATTGCGCACCAAATCACTGCACCTCAATTTTCAACCTTCCCAGCCTCTGGCCCCAAATTTTGACGCACAATTATGTTCTGCGATTTCAGAGGCATTGGTGCTCTGTGCGCCAGTTACTCTTGCCAAGATGCAAGAGTAACCAGAAAATCTTTTTTGTTTGGCTGAGGCTCGTGTTGTCCAGAACCGGCTTTTACGGGCGTCCTGCCCGAAAAAGCCTAACCATTCTTCCATGAATGGTTTTCTTATTTCAGTGGCTGATTTGAATTGAGTGACACATAGCAAAAGCCAATTTGATCGATGTACTCAGGATGAAATTTAAACCGTTTAGACCTTCTTTTTTTGTCCTTAAAAAATAACCAATAAAAACAATAAGCTACGAATAGGTGGTTTTAACAAGGTAAAAAAGGGTTTTTGTGGCTAACCTCTTGCGAGTGCTTATTTTTTCGTGATATGTTCATT # Right flank : GGCTAAAACGCCACTCACGGCACCGCTTGTTGCGACTAATTTGAATTGAGTGACACATAGCAAAAGCCAATTTGGTCACAGGACTCAGGGTGAAAAATCAGGACGATTTTTTCAATTATCCCCTAACAAAAAATCTTGAGCAGGAGCGAATCAATCCGACCCGGTCAGCGTCCACGAACTAAACCGTTCTTTTGGGTATTGGAACGCCAAAAGTATCTGGGGCGCGTGCATCAGATGTCGCAGAAATTAATAAACTCATTGCGCACCAAATCACTACACCCCAATTTTCAACCTTCCCAGCCTCCGGCCCCAAATTGTGACGCACAATTGTGTTTTCCAATTTCAGAAGCATTGGTGTTCTGTGCGCCAGTTCATCTTTCAGAGATGAAAGACGAACCAGAAAATCTTTTTTGTTTGGCTGAGTTGTGTGTTGTCCAGAACCAGCTTTTACGGGCATCCATGCCCGAAAAAGCCTAACCATTCATCCGTGAATGGTTTTC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 8 1099525-1098885 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046269.1 Vibrio spartinae strain 3.6 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1099524 29 100.0 32 ............................. TAGTTATTAAAAGCATAAGGAGGTATCTCAGC 1099463 29 100.0 32 ............................. TCGAATTAGCTTGTACGCATAGTTACCTTTAA 1099402 29 100.0 32 ............................. TATCAGGTTGTGAGTTACGTGATTGGGTGTTT 1099341 29 100.0 32 ............................. ATAAACCACGTTCCATACATTTTTGAGCCACT 1099280 29 100.0 32 ............................. GGGTAATCACTCCCGCCAATATCAGCCTGCAT 1099219 29 100.0 33 ............................. GTACAAAGAGTCTAGCTGTTTATCAGTGGCTGC 1099157 29 100.0 32 ............................. TCGCCATTGTTTGATGCGATTAAAGGTGATGC 1099096 29 100.0 32 ............................. CAATTCCGTCATCTTTTGTTTGCAGCTTGTTG 1099035 29 100.0 32 ............................. ATAGCCACTCTAGCTCTGTGTGTTTTGTTTTG 1098974 29 100.0 32 ............................. ACACAAACATCAGCATGGAACCTGATATTGAA 1098913 29 89.7 0 ........................CC..C | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.1 32 GTGTTCCCCGTACACACGGGGATGAACCG # Left flank : GGGCGAATTGGTGATCGTAAGGGATGGTTTCGTACATAGTTATCTTCCGAAGAGTTAGTGAAAAATATATCACCACGGGAGTTCCTACGCTCGGGCGGTGAACTGGAACAAGGTGTAGGAATACCGTTCTCTCCGGAACACGGCCAGCCGAAGCTGCCTTGCCCAGCTCACCATAATTCAGATGTGCTGAGGCCGCATATAGTAAAAAACCAACGTAAAGTTAGCAACCTATAATGCCGGAAAGCTGTTACGGGTTCCTACGCCCGGCACCGGATTTTGCCAGTGCAGAGCGTAGGTTATCTGTTTTTGGGAAGATAAAAGTATTAAAAAAGTATGAGATTTTGGGTGTGGGTTCTCAAAATAATCAGCCAATGAACGTCTGAAATTGATAAAATTCAATCCAGTTACAGCGCTTCAAAAAGATGAGTTTTGCTCTTTAAAATGTTGGTAGATTGTTAATGATGAAATTTCTTTTTATTGATCAATGATCTATATTTAGA # Right flank : TGTAGTTTTAAGCAGGAATTGAACAAAAACGTGTCAGGGGTTTTACTAAATTTGCCATCCACAAATGACTTTAGGTATGGCAACGTCGCTTCATTGTTTTGTCCGGTATGAATGGTGCAGATCGAAGTGAAGCAATCATGGCAAACATCAACACTGTTCATCACATCTGGTTTATCCCTTTGAAGCCATCAGATAGCGCTGCATCGCTTTCACGGTATCTTCGCTGCAATGATGCTCAATGCCTTCCGCATCTGCTTTTGCGCTGGACTCCGGGACGCCCATTTTGATCAGCGTTTCATAAACAATGTGATGTCTTCTGGTCACCTTTTCTGCTAACTGTTTTCCTTCCTGTGTTAAAAACACGCCACGGTATGGCTTAGATTCAACCAGACCGGCGCTTCTCAAACGAGAAATAAACTTAGACACCGCCGCCGGACTGACACCAAACCGTTTCGCCAAATCAGCACTGCGGACTTCTCCCCGGGATGCGAACAAATCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACACACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 1103194-1102737 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046269.1 Vibrio spartinae strain 3.6 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1103193 29 100.0 32 ............................. CTGGTGTGGAATGGGAAGCTTCACGTTTAGTA 1103132 29 100.0 32 ............................. CCGAATTAAATCCATATTATCCGCTTTGGTTT 1103071 29 100.0 33 ............................. TGGAATACACACTAGATGGTAAAACCTACATTA 1103009 29 100.0 32 ............................. TTTATTGGTAGTGGTATTTATATTCCAGCAAG 1102948 29 100.0 32 ............................. TCACTGGGTTCACTCAATAAGAGGGCAAATCT 1102887 29 100.0 32 ............................. GAGCTGCGGGATGAGGCAATGAGAGAAATCGA 1102826 29 100.0 32 ............................. GAGCTGCGGGATGAGGCAATGAGAGAAATCGA 1102765 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 100.0 32 GTGTTCCCCGTACACACGGGGATGAACCG # Left flank : TTTGGGCGAATTGGTGATCGTAAGGGATGGTTTCGTACATAGGTTGTAACCTCTGTTTGCGATGAAATTCAAACCACCACGCAAAGGTTCCTAATCTTTAGGTGGTGAACTAGACAAGGTTAGGAACAACCGCTCGCAATACACGGTGCGCCGAAGCGCCCTAGCCTAGCTCACCAAAGTGGAAGTGTGCCAAAGCCCGACGTAAAAATCTAGCAAAGAGCAGATTTTTACGTGTATGCGAACAGAATGCGGGGTTCCTAATCCCAGCACCGGATTTTGCCAGTGCAGGAGTTAGGTTATCTGATTGTGGGAAATAAAAAGTATTAAAAAAGTATGAGATTTTGGGTGTGGGTTCTCAAAATAATCAGCCGATGAGCATCTGAAATTGATAAAATTCAATCCAGTTACAGCGCTTCAAAAAGATGATATTTGCTCTTTAAAATGTTGGTAGATTGTTAATGATGAAATTTCTTTTTATTGATCAATGATCTATATTTAGA # Right flank : CGGTAAAATCCGAACTGGTAACTTTATCTAAAGTGTTCCTTCGATTTCGGCAACAATGTTACCGCGAATGGCTCATCCAGTGTAATCGTCAAATACCAATAAAGCAGCCTAGGAAGGAAAGACAAGATGATGTGTCACAACCTCATCTTGTCTAGATCGGAAGTTAGTGAACTATGATTTTATTAATAACGGCACTAGAGCTATTGCATGACTGAATGAAGTATCGGCTTTCTACTCCAGCGTTGGTTTGTGCAAAAGCTTTCTTGAGGACAGCCATGTAATCGTTAATAGAAAGATTCATAAATTTAGGGTTCAGTACAATCTGATTCGAACCACAGCGAGTGTAAGTATCTAGCTGAATTTTATGAACCGGAATTAATGTAGCGTTCTTGCCATAAACAATACTACCTCGTTCGGCATTAGAAATGATCAGAGCATCAAATTCATTTTTATCGGTATACTTTGAATTAATTATCTGTTTTAACTGACTCCCTTCATAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACACACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 10 1114427-1114215 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046269.1 Vibrio spartinae strain 3.6 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1114426 29 100.0 32 ............................. ACAATCCGGAACTGATAGACATAACAGAGTGC 1114365 29 100.0 32 ............................. ATTTTCCCTGTACTCGTCGATGTGTTTTTGGA 1114304 29 100.0 32 ............................. CAAACATCTAACTGATACAAGTATCGACCGAT 1114243 29 93.1 0 .....A......................T | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 GTGTTCCCCGTACACACGGGGATGAACCG # Left flank : TTGGGCGAATTGGTGATCGTAAGGGATGGTTTCGTACATAGTAAACTCCAGAGATTAATGGGAACAATTTCACCACGGGAGTTCCTACGCTCGGGTGGTGAACTGGAACAAGGTGTAGGAATACCGCTCTCTGGAATGCGGTCAGCTAAGGCTGCCTTGCCCAGCTCACCATAATTCAGGTGTGCTGAAGCCGCATATAGTAGAAAACCAACGTAAAGTTAGCAACCTATAATGCCAGAGATTAATATCATGGGTTCCTACACCCGGCACCGGATTTTGCCAGTGCAGGAGTCAGGTTATCTGTTTTTGGGAAATAAAAAGTATTAAAAAAGTATGAGATTTTGGGTGTGGGTTCTCAAAATAATCAGCCGATGAGCGTCTGGAATTGATAAAATTCAATCCAGTTACAGCACTTCAAAAAGATGAGTTTTGCTCTTTAAAATGTTGGTAGATTGTTAATGATGAAATTTCTTTTTATTGATCAATGAGCTATATTTAGA # Right flank : TTGGATATGATAAATAATGCTTGTCATTTTGCCGTGACTGAAAAGAGACGGAACCGTTTCATTTGAGAAGATGTAACAACATCATTCATGTTGAGACTTCACTCCAATAATTTATCTTTGAGTCGAAAACCGGCTCATCATATTCATTAATATCCAATAAGATATGCAAACGATGTGTTTTACCGACATTGGTTAAAAAATATAAAAAGATTCTTTCATGACAACGTTAGGTTTCAGGCTCACGATCAATGGGGTCAATGATGCGTCATTGGTGGTTCGTGACTATCAGTGATTTGACCTTTGAACAGATGGTCGATACCACCGCGCTGCTTGAAGTGCTCCGCAACGGGCAGGTGGTACAGAAAGTCCATGGCATCATCCGCAATTTCAGCCGCGGCGATACCGGCCATCATCACACCTTTTATTCTCTGACGCTGGTGCCGTCGTTCGAACGGCTCTCATTACGGCACAACAGCCGCATCTTCCAACAAAAAAGCGTG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACACACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //