Array 1 15776-17028 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXV010000006.1 Listeria innocua strain FSL L7-0297 NODE_6_length_210058_cov_45.241922, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 15776 29 100.0 36 ............................. TAGCTTTGCGGGTTTCTTCGTCTATTTTGCGTTTTT 15841 29 100.0 35 ............................. CAATTTGCAACAGAAATCTATATAAAATATTGTCC 15905 29 100.0 34 ............................. GTCGCATAAATTTTCATATAAGGCTGTGATTCTA 15968 29 100.0 34 ............................. TACGTGATGTTACATATTCGCTTGTATGGCTCAC 16031 29 100.0 36 ............................. ACTGTTACATCTATTGCACAAAAATTTGGAGGGCTT 16096 29 100.0 36 ............................. TCTTCAAAATGAATGTGTGATTTAAATTTCTCAATA 16161 29 100.0 34 ............................. GACAATGTCGCATTTGCTAAAAAGTTTATTTTCG 16224 29 100.0 34 ............................. AATAGTTTCCGGCACATCTTCATATCGCCATTCT 16287 29 100.0 35 ............................. TCGATAAAAGCCGCGATAAACTCGAATGCGTATTC 16351 29 100.0 37 ............................. TATTATTGGGGTGGGTTTTTGTTATGGTGTTAGCTAA 16417 29 100.0 35 ............................. CCATTCCAGTTTTTTTCTTGTTCATCTGCTTCAGC 16481 29 100.0 34 ............................. CAAGAAGCGCCTAAACAGCCAGAGAAGACGGAAG 16544 29 100.0 34 ............................. TATTTAAAAAGCAATCTTACTTTGCTGACTTTTT 16607 29 100.0 35 ............................. AGCTCAATTTCTTCATGTTTTTCAGTAATAACATT 16671 29 100.0 36 ............................. TTAAAAGCAAAATTAGTTGTAATGAGCAATGCTGAT 16736 29 96.6 36 ...C......................... TCGCTTATATGCGATTCTACAGATGCAAGTATGTAC 16801 29 100.0 38 ............................. GTGTCCGGCGCGAATTTGACATGATTTAAAATTGAACG 16868 29 96.6 37 ...........G................. CATAAATTAAATTTAGACATTTTTTTATCTAATTCAT 16934 29 100.0 36 ............................. CCTAATACACCTAAACTACTCTTATATATAAAAACA 16999 29 93.1 0 .......................A....C | C [17022] ========== ====== ====== ====== ============================= ====================================== ================== 20 29 99.3 35 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTTACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGAAGAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCCAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTTCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACCAAAATTCCCTTAGAAGAAGTCGCACCGCCAAACAGCGCCGCCACAACGACACAACTCAAAAAGAAAATCTGCACAGTTTCTGCAAATCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCTGCTGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCGACACCAAACGTCTTGGCTGCGAGGTTGGTATTGGCAAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAATAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 287017-287685 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXV010000004.1 Listeria innocua strain FSL L7-0297 NODE_4_length_298432_cov_54.818508, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 287017 29 93.1 34 ..............AC............. TTTCCATTTGCACCAGATTCATAAGTTCCGTTGT 287080 29 96.6 35 ..............A.............. TTGTCATCATATTTAAAAACTTTTATTAACTCACT 287144 29 100.0 35 ............................. TTGAATTTAAAGCCCAACGGAGCAAAACGAGCAAT 287208 29 100.0 36 ............................. TCGATATAACACATATATTTAAAATCATTAAAACTA 287273 29 96.6 36 ..................A.......... ATGTGTAATTTTATTGGCTTCATTGATTAGTGTTTC 287338 29 100.0 34 ............................. TAGCAACACGATAAGCATCTTGAGATTTTTTAGC 287401 29 100.0 35 ............................. AATTTTTTCCGCGAAAAAGTGAAAGCATATTTAGA 287465 29 93.1 35 ..............A...A.......... GTAGTAGCTATTAAAGATAAGGTTTGGAAGGAAGG 287529 29 96.6 35 ..........................G.. ATCACTCCCGGCTTATCTAGCGGATTCCCTTGTTT 287593 29 93.1 35 ......T.......A.............. GGAATCACGGACAGTCAGGCGAAGATAACTAAACT 287657 29 82.8 0 ......A........CA.A....A..... | ========== ====== ====== ====== ============================= ==================================== ================== 11 29 95.6 35 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GTGTACGTGCCACAACTTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGCTTGCAAAACTCAAGAATCAAAGAAGTCATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACGATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTCCAAGAAAACCGTTCATTGCATCCGTTATTTTAAGATATAAGCAGAAAACAGCAACTAGTAGAGTTGCTGTTTTTTTTGTTATCTGTCGACCTTGAGTAGCGTGAAAAACACCTGGAATCGACAGAAATTTGTAAGTGGCTGGGGGAAGATGTGCTTGGTGATATTTGCTTGGGAAAATCTTCCGGATAAGGGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATTGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCATTCAGATTTAACTCCACCACCATCCACCAAAATCAAAAAAAACGTGACTGCCAAACTCGCAGTCACGTTTTTTCTCAATCATTAAACTCTTTTAAAACATCCTCTTTGATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTATATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCAACTTCACTTATGGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTGTTTTTC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //