Array 1 6997-7147 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCEM01000019.1 Serratia marcescens strain EL85 contig19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6997 29 100.0 32 ............................. CCATCCAGGCAGAGACAGTGCTGTATGAGGCC 7058 29 96.6 32 .............T............... TAACCCCAATGCCACTGCGGATCCGCCAAACA 7119 29 86.2 0 ...............A........G..TC | ========== ====== ====== ====== ============================= ================================ ================== 3 29 94.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCAGAGTTTTTCCAGGCATCGAGCAGTTCGTCGGCAAAAATGGCTGTTGGCAGAATCGTTTTGATGCGCGCCGCCATGTCTTCTTTGTTCCCGCTGACCGACAGCGGAGCCGGGATCGCAGCTTCACGAGCCGCAAACTCAGGATCGATGATTGCCAGCTGCTCGAGTAGCGCATCGCGGCCACCGCTGACCTTAAGCGGTTCAGGCAGCGTGCTGTTGTACTCTTTGATGCAGGCTTTCATGGCTGTAGCAGTGAATTTCTGGCCGTCAGGAATGGTCTGGAATTCCGGCGGCAGCAGGGAGTAAATTCGGCCTATTTCGTCCGCATTACCGCCCAGCGCGTAAGGTGTTGGCAGCTTCGCGTTGTGTTCATCAATGACGGTGCGCAGAGTGTCCGTATCCGCCATTTTCGGCAGCGTATCGTTGTGCTGTTCAATAAATGCGCGCATTGAGGCGGTATTCGTGAAGGCGCCGTCCGGGATAATCGGTTCTACGTTGAA # Right flank : CCAGAGCTTCACTGCCGCACAGGCAGTTCGAATATGAGGGATAAAACTTTACCGACACCTGTTAACGGGGAAGCAAATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAGCGTCAGCTCCCCTTTGCCGCGCAGCGCCTTGGCACCTTTGCCGGCTTGATGTTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATATAGAGATACCAGTGGGGTAAGTCCATCATTGGGGTCCTGTGCAAGGGTAGAGATGACATCAGGCCGCCATAGCTAAGCGCGGCATCTCTATTTTGTCACGATTTAACGATGGATTTCACCACTGGCGGAACGGTTTGTTTATTCCGTCTTGACGATAAGGGATTATTTTACACCCACGGT # Questionable array : NO Score: 3.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 38073-37921 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCEM01000237.1 Serratia marcescens strain EL85 contig237, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 38072 29 100.0 32 ............................. CCGGCGCGACCGATCAGCTGGTTGGAGATTGG 38011 29 100.0 33 ............................. CGCCACGCCCGGCTTGCCGTAGATGCGTATTGC 37949 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 3 29 100.0 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTCAGCCCGGTAGACGTGGCCGGCGAAGACCGCCAATGGGTGGCGCTGGCGCCGCTGGCGGTTGACGAAAGCCTGCGCCGTCAGGGGCTGGCTGAAAAGCTGGTGTACGAAGGCTTGGACTCGCTGAACGAATTCAGCTACGCCGCGGTGGTGGTGCTGGGCGATCCGGCCTATTACGGCCGCTTCGGTTTCAAACCGGCCGCTGCCTATGGCCTGCACTGCCGCTGGCCGGACACGGAAAGCGCATTCCAGGTGTATCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAACAGGTTTTAGTTTTTAATGTATTGATAATTAAATTCTATTTGGTGAACGGGAAATTCGCCAAGAATGTGTTTTGAAATTTGATTATAAATCAATTGGTTGTGTTTTCTAGAGAGTCGAAATTATTTGGTAGAATTTGAGGTCTTTAAAAATACATTTTAATTCAATAACATACTCTAAGA # Right flank : GCGCCGTCCGGGATAATCGGTTCTACGTTGAAATCTCGCTCCAGATTCTCCGGCTCAAGCGCCAGCGTGTGCACCAGCGAGCCGAACGTCAGCGCGTCGCTGCGTTCCCGGCCGATCGTTTTGATGACGTGGCGCCCGTGGTAATACATCAGGCTGATACGCGCGTCCTTCACCTGTGTGCTGCTGATGCCGTTCGCAGCGTGATAGGCTGTGTTTGAAATATCAGCGTAACGGCCTGGCTCGAAATACGCCTGCGCGCAATCTGCTGCAGGCTCACTTTCTTGTCGCTGCGCTAATTCCGCTTTTTCACCGTCGTTTGAGGCGTCATTGCATGTCTGCTCTGGTAACGGCTGCTGCTCGGCATCTTTGCTCGGCTCGCTATCAACCTGCACTGTAGCCAGCGGGGAGGCTTCGAAAAGACTGGACACATCGAAGCGGCCACCGCCTAAACTGACAAGCTCTGGCTCTGGCTCTGGCTCTGGCTCTGGCTCTGCAGCCAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 453-58 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCEM01000251.1 Serratia marcescens strain EL85 contig251, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 452 29 100.0 32 ............................. CTATTACCGGCCAGACATCAACAATAATTTGG 391 29 100.0 32 ............................. TGGGCATGGAGCAATAACCCGGCGTGGATTTG 330 29 96.6 32 ............................T GGAGACAGACGCAGAGCTACGCCAGCGTCAGG 269 29 100.0 32 ............................. TGTCTCGCACCGTTTCCACTATTACCCCAGCA 208 29 100.0 32 ............................. TTCATGACCCAAATGCGCGGGCTGGCGAATTC 147 29 100.0 32 ............................. AGCTTAAACCGGATGCCCGCACTTCACTGCAA 86 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCCCCGCGCCAGCGGGGATAAACCGACAGCTTACCGGTCACATCAGCGTTTTTGCGG # Right flank : GATACTATAATCAGCTGGGTCAAGCCCTTTCCCGTGTTCCCCGCGCCAGCGGGGATAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //