Array 1 371121-368466 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNU01000002.1 Cronobacter dublinensis strain cro4191A2 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 371120 29 100.0 32 ............................. CGTACAGGAAATTGCGGAGCGAGCTGGTAAAT 371059 29 100.0 32 ............................. GCTGAACGTGAGCAGCGGGAAGCGCGTAAGCG 370998 29 100.0 32 ............................. CCAGCTCCCGCGCCCGGCACGTCCGCCTGGCC 370937 29 100.0 32 ............................. CCCGAAATCTATTTTGATGGCTGGCGGTAAAT 370876 29 100.0 32 ............................. GGCGGCTCAATATTCTGTTTAACCCCGCCGAA 370815 29 96.6 32 ............T................ CCTGCGCGCTGAGGACGTCAGCTGACGCAGAG 370754 29 96.6 32 ............T................ TTATTACGGTTGATGATTCGGATTTTCATATT 370693 29 96.6 32 ............T................ TTGATTTCCTATGTTGCGTTGAATGCAACACA 370632 29 96.6 32 ............T................ GCCCCCGCATTTTTCCCGCTAACCACCCTCGG 370571 29 96.6 32 ............T................ ATCACACGGCAGCCGGACGACACCACGCCCGC 370510 29 96.6 32 ............T................ GTGCCACGGACGGTGTAAAAATGGCGGCCGGG 370449 29 96.6 32 ............T................ CAATGGTCTATGGCGCTATTCCATGCCAAATC 370388 29 96.6 32 ............T................ CTATCATCAGTCACCCACAGACGAACAATCAA 370327 29 100.0 32 ............................. GGTAAACGAAGAATGCGCGTAATGAAAGCTCC 370266 29 100.0 32 ............................. CAGATGGCCGACAAGGCTATGCGGCAGCTTGA 370205 29 100.0 32 ............................. GCTTAGAAACGTTATTGTTTATATCGGAGAAA 370144 29 100.0 32 ............................. GCGTGCCGTCGCCTGTGCGCGACAACACATAC 370083 29 100.0 32 ............................. GCCGTTGCAGCGTTGAGCACGGCCAGACGGCT 370022 29 96.6 32 ............T................ GATGCATGCAGGGTCGTGATGTGCAGGGGCAG 369961 29 96.6 32 ............T................ CAAATTACGATTTGTGGCACGCGCGCAAACGC 369900 29 96.6 32 ............T................ TCAGGGGATCTGTTTGCGGACCAGCGTCATCA 369839 29 96.6 32 ............T................ AATAAAGTTTATGACAGTAATTAATAGATTTT G [369822] 369777 29 96.6 32 ............T................ TTATGTCGGAGGCAGCATGAGCGAAATAAACA 369716 29 96.6 32 ............T................ TTTGCGCAGGGCTGCCACCCTGTCGCAGTGCT 369655 29 96.6 32 ............T................ GAGTACGGCGGCGGATGGTGGCTGGGGAAAGC 369594 29 100.0 32 ............................. ACCGACGGCCAGTAATTGATTAAACGAGACGC 369533 29 100.0 32 ............................. CCACCGTAGAAACTTAAGAGTCACTAACGGCA 369472 29 100.0 32 ............................. TGCACCTGCACCTTCTGGTCTGTCGACAGCCA 369411 29 100.0 32 ............................. TTCGCCAGTGCCTGGCTTGTGCCTAGTGCATA 369350 29 100.0 32 ............................. ACAATATAAAAACACTATGCCTGAACAGGTTC 369289 29 100.0 32 ............................. ATTAATTGATGGATCACAAATAGTCATTTCTA 369228 29 100.0 32 ............................. CTTCTACCTATTTGTAAAGGCGGAAATCTGTA 369167 29 100.0 32 ............................. GTAGACCGTTGCCTCAACGAAATACGCATTCA 369106 29 100.0 32 ............................. CCTCTTCGAACGTTACGTCAGGGAAATCACCA 369045 29 100.0 32 ............................. ACAGGAGACGAAGACCTGTTCTGGTTAAATGG 368984 29 100.0 32 ............................. GCATCTGGCGGCACTCTCACGCAGGCAAAGAG 368923 29 100.0 32 ............................. CAGGCGGTGAGCATGCCCTGGTACCGGAGGCC 368862 29 100.0 32 ............................. AGCAGTCGGCGGAAATGATGCGGGCCACGGCA 368801 29 100.0 32 ............................. TGGACCTGCTGACTGTTACTGTTCAGGCGATG 368740 29 100.0 32 ............................. CGGTTCGGCATCGCGGCAAATCCTTATCAATC 368679 29 100.0 32 ............................. GATCCGGCCGACCGGAAAATGAATTTTTAATT 368618 29 100.0 32 ............................. GATGCCACGACAACTGGTGATGAAGTGAAAGA 368557 29 100.0 32 ............................. CGCTGTCGGTGTTCGCGTGTGAGTTTGACACG 368496 29 82.8 0 ..A......C...C......A.......T | G,C [368472,368484] ========== ====== ====== ====== ============================= ================================ ================== 44 29 98.5 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GAGGTGCTGGCGGCGGGCGACATCGAACCGCCGCAACCCGCGGCGGATATGCTGCCGCCCGCTATTCCACTGGCGGATTCGCTCGCCGAAGCGGGCTTCAGGAGCCGCTAATGAGCATGCTGATGGTTGTCACCGAAAACGTGCCGCCGAGACTGCGCGGGCGGCTCGCCATCTGGCTGCTTGAACTGCGCGCCGGGGTTTATGTTGGCGACGTCTCGAAGCGGGTACGTGAAATGATCTGGCATCAGATAACCGAACTCGCGGAAGAGGGCAATGTCGTGATGGCCTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTATGGCGTTAACCGACGCATTCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCATTTTTACCCCTTCAGAATCAGTAGGTTAACTGCTCTTTAAGAATATGGAGATGTAATAAAAAGGTTGGTGGATTGTTGGGTGTGAAAAATTTCCTTATAGAACAGTTATATAGTTTTAGA # Right flank : TTGGAATAATTCAAACGAAGGTTTAGGCTCTCCGGGAAATAGAAATGTGATTATTTTTTATAAATATGATTACGCTTCTTAAAATGGCTAATTAATATTGTGGTTAATGGCTTTTAAAGCTTTATTACAATGTCTTTTTCGAAAATCATATAGCATTCCCTGACCATTTTTTTAAAAGGAAAATTTATATGGCATGGGATAAATATGCGGCGATAAGACACGTGCGCGATCGTGCTTATAGCCAAAGTCATCATAAATGTGAGCTTTTTGTTAAAGTAAAGAAGCTATTATTGCAGGTGGAGTGGATATCTATCCCACACCCTCAGCAAAAGATATGGGCAAGGCATTGATAAAACCAGGGTTTTATGAGGTTTATGGCTAGCCTGTTGCTGGTGATGTGGCGGTGATCCAGGCAATACCCGGCCATCCTGATGACCATGCATGCATTTATGATGGGCAAATTTGGATAAGCGATTTTCGACAAAAATCGCTCTACCCTG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 399948-397417 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNU01000002.1 Cronobacter dublinensis strain cro4191A2 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 399947 29 100.0 32 ............................. CTGGCACTCGCTGTCACAAAAGCTATTCACCT 399886 29 100.0 32 ............................. TACGCGGCGGGCGGCGCAACGTGAAGTTGCGT 399825 29 100.0 32 ............................. TGCCGAGGCAAAGGGTGCCGCGCGCGTCGAGC 399764 29 100.0 32 ............................. GCAGTTAGAGCCGTGGGCACCATGTCCGCGGT 399703 29 100.0 32 ............................. AAACCCCAGCCACCGACGCCTTCATCGCAGAG 399642 29 100.0 32 ............................. AAAATGACAATGAGCCCGGATGAGGTTCTACA 399581 29 100.0 32 ............................. AGTGGGCTCATTTTTACCGTCGTTCTTTTTTT 399520 29 100.0 32 ............................. ACGGCGGCGCTTGCGGTTCACGACCACGGATA 399459 29 100.0 32 ............................. TTTTTTGTGACCAGGTTTATTTGGTCGTGTGT 399398 29 100.0 32 ............................. CACGTGCATTTCGCGTGCATTTTTTTGTCTTA 399337 29 100.0 32 ............................. CACCAGATCCCCGTCGGCGTCGTCAAAGGCCA 399276 29 100.0 32 ............................. GCGGTTGTAAATACTGACTGGGGTCAGCCCTA 399215 29 100.0 32 ............................. TGCTCCAGCTCTATTACGGACTGTGCGAACGT 399154 29 100.0 32 ............................. TAGCCCAGGAATATCAGGAAGCCATTGACGCT 399093 29 100.0 32 ............................. TCCTGGCCCATTTGTTTAAACTGCTCAGGGGT 399032 29 100.0 32 ............................. GCCGAGGCCACCGCCGCGGGCGGCGTGCTGCG 398971 29 96.6 33 ............................T GAAATTCAAGGTCAACCGTGCCTTCTTCGGCGT 398909 29 100.0 32 ............................. ACCGAGAGATATTATTTCTTGGACTGGAAAAT 398848 29 100.0 32 ............................. AATACCTGTCTTTACGCAAGCATCTGATAGGT 398787 29 100.0 32 ............................. CTCGCAGAATCGTTAAACGGCGACACCAGGAA 398726 29 100.0 32 ............................. CGGAGCCACTCGTCAAACGTGAGGCGCTCAGT 398665 29 100.0 32 ............................. CAGCGCCAATGCAGGCAAGAGCAATGATTGGT 398604 29 100.0 32 ............................. GCTCCGATTGGGCTACTTCTCAGGCCATTTCG 398543 29 100.0 32 ............................. CGACGCCGGGGCCGTGGACTCACGACGGATGC 398482 29 100.0 32 ............................. ATACGGCTGTTCGCCGCCTCACCCCTGTGGAG 398421 29 100.0 32 ............................. CGAGCTGTTGAGTTTTACGAGCAGGTTAAGCA 398360 29 100.0 32 ............................. GTAGCGTTCTCCGCCGACGTGGGGTACTTGCT 398299 29 100.0 32 ............................. GCCATAATCAGCGCGACGGCACCGTCGATTTT 398238 29 100.0 32 ............................. GAAGCGTATCGGCAGCGCCAGTTATCCGGCAG 398177 29 100.0 32 ............................. GGCGACCAGCAGACAACGGGTATCAGTACCGC 398116 29 100.0 32 ............................. GGGCTGCGCGCCGCAAAGGCCTTGATTGGCAG 398055 29 100.0 32 ............................. CCCACCACGCAGACCTCGTTAGTCGGGCTGGC 397994 29 100.0 32 ............................. ACGCAATGAGCATTTGCGGCCGGTGGATGTAC 397933 29 96.6 32 ............................A CTACGTCAGTGGTTAATTTGCCCTCTGCGGCC 397872 29 100.0 32 ............................. GGCGAGTATGACGCTAAAAGGCCTCGTCGCTG 397811 29 100.0 32 ............................. AAAAAATAGCGCGAGAACTGGGTATGGATGCT 397750 29 100.0 32 ............................. TGGGGCGAGCTCTCACTCAAACTAACCACCGG 397689 29 100.0 32 ............................. TTCCAGTGCCTCCCAGGCTGGCTGGACACAGA 397628 29 100.0 32 ............................. TCAGCAAAGACACAGTAACAAACGTTAAAAAG 397567 29 100.0 32 ............................. GGCGCTATCACTACTTGCATCCGCAAACTCTT 397506 29 100.0 32 ............................. CGAATCATCCTGGTATTCGACGAGGCGTCAAA 397445 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCGCACAACATCGCCTTTATTGTCGTCAATATCAACATCAACTATCGCCGTCCTGCGGTGCTTGGCGACGTGCTGACCATCACCAGCGAGATGAAACAGCTCAATGGCAAAAGCGGGGTGCTGAGCCAGGTGATTACGCTCGGGCCCGAAGACGAGGTGGTCGCCGATGCGCTCATCACGTTCGTTTGTGTCGATCTTAAAACCCAGAAAGCGCTGCCGATTGAAGGCGAACTGCGCGAAAAACTGGAAAATATCACAGGGTAAATTCTGCAATCACGCTGCCTGTGCGTGTAGTCATGGACTTCCACTTACCGAAAGCGAACAATCCGGTAGATGTTACCGGCCCGAAAGCACGCTGAAAAAAGGCTTTTAAAATCAACAGGGCAGCCGCTCTTTAACAAGATGGGTTGTGAAGTAAATGTTGGTAGAATGTTGGGGTCGATAAAGGTTTAAAGAAAACAACAGGTTGTTTTTAGA # Right flank : AACCCGTTTGCCGCGGCGCAAAAAACTCATCTCTGTCACTCGTGCCAGCCCGAATATCCAGCTTAACCACCCGCCAGGGCAACCCCTCCCAAACCCCATATTCTTCAGCGGCGTTTATACTTCAAAGCCAACATGAAATTTCGCAACACTGCGCAACGAAGGAGAGGCTATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTATGACGGCTTCAGCAAAGGGTTGCACGCGCATCTGATTTGCCACTGTCTGCTGATTGAAACCCAAAATAACGGACTCGTGCTGGTGGATACCGGCTTCGGCTGCGACGATATGCGCCATCCTGGCCGTCGTTTGCCCCTCTTTTTCCGGGCGCTGAATAACATTCAGTACCGCGAATCATTAACGGCGCTGCATCATATTAAGGTGCTCGGTTTTAAGCCGGAGGATGTACGGCACATTGTACTGACGCATCTGGATTTCGATCATGCGGGCGGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //