Array 1 1049380-1050386 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051353.1 Salmonella enterica subsp. enterica serovar Worthington strain CVM 30148 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1049380 29 96.6 32 ............................A ATGCCGCCACTTCCATTTCGTTCAAATGCCGC 1049441 29 100.0 32 ............................. AGAGCAGCTTGCTCACTACCGGGGCAGAAGGG 1049502 29 100.0 32 ............................. TATTTGGACAATCAGGTCGAGGTTCAGTATGA 1049563 29 100.0 33 ............................. TCACAAATGCGAGGAGTCAGCCCAATGAGCAAC 1049625 29 100.0 33 ............................. ACGGGACCGATATTCTGCTGCCCGGGGGCACGC 1049687 29 100.0 32 ............................. GAGTTCAGTCACTTGAATGATGCGCGGGAATA 1049748 29 100.0 32 ............................. GTCGTCTGGCATATGTGCGTAGCCACCTCGCA 1049809 29 100.0 32 ............................. CGGATGATTCGCGCATGACTTGGGCTACTGCG 1049870 29 100.0 32 ............................. GGATATCGAACTCTTACCGCCGACGATATTGC 1049931 29 100.0 32 ............................. AGAGATTGATTAAATGAACAGTAACAAACTAA 1049992 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 1050053 29 96.6 33 ..........A.................. TCTGGTGCTGGCGGTTTACTGGGGAGTATTGGC 1050115 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 1050176 29 93.1 32 .........C..T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 1050237 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 1050298 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 1050359 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1059121-1060800 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051353.1 Salmonella enterica subsp. enterica serovar Worthington strain CVM 30148 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1059121 29 100.0 32 ............................. CCCCTCGCCCTCGATCTGGCGTTAGTTACTGG 1059182 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGTCCGTATT 1059243 29 100.0 32 ............................. GGCCTGATGAAAATTGCCGATAGCATGGACAA 1059304 29 100.0 32 ............................. TTTACAGGTCATTTTGCTGTCCTCATTTTTGG 1059365 29 100.0 32 ............................. TACTGGATATCAACCTGCCTGAGTTAAAGACC 1059426 29 100.0 32 ............................. CCTTGTGTGCAATGCAACAAAGGCGAACTGGC 1059487 29 100.0 32 ............................. ACACTCAACGCTGTAGATGTAGTCAGTAAACC 1059548 29 100.0 32 ............................. GCGTGGAGTAATGGGCGGCTAAAACTGCCGGA 1059609 29 100.0 32 ............................. ACCGCAGGTGATATTGACACCGGAGCAGGGGG 1059670 29 100.0 32 ............................. CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA 1059731 29 100.0 33 ............................. CAGCAAAAGTAAAAACCGCTTCCGCCCAATTGC 1059793 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 1059854 29 100.0 32 ............................. GAATATAGGGCTTCATATTTGCCAGTTGTTTT 1059915 29 100.0 33 ............................. ATCGGGCGGGATATGTGCTGGATTCGTATTAGC 1059977 29 100.0 32 ............................. GTTGAATAATCCCCGCACATCATCCTGTAAAA 1060038 29 100.0 32 ............................. CAGTCTGCGGGGTTTCCTGCGTGTAATGAAGT 1060099 29 100.0 32 ............................. GGAAAAAACGCTTGTCGCCAAGTATGTTTTTG 1060160 29 100.0 32 ............................. CACAGAGTTAAACGCCGCTGCAGCGCTGTTTA 1060221 29 100.0 32 ............................. TTCCATATTCAGGATCATATCCGCACGATAAC 1060282 29 100.0 32 ............................. CCTGACGCCAACGGAAACGTGAAAGTCTCAAC 1060343 29 100.0 32 ............................. TGTTCCCCCAAGGTTCAAAAATTCAATATGAG 1060404 29 100.0 32 ............................. GATGACCCGTATACGTTCAAAATCAAAATCTA 1060465 29 100.0 32 ............................. CAATAGGGAAAATGGCATATGAGGGCGCGCAA 1060526 29 100.0 32 ............................. TAAAACGATATTCCCGGATAAAAACGGAAAGC 1060587 29 100.0 32 ............................. CCGACATGGGCAGGATTGCTGACGTTAGTCGA 1060648 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 1060710 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1060771 29 96.6 0 A............................ | A [1060797] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGAGAATAAAAGCGCTCTTTCCTTTAATTACTTTGCCTGAAGCCTGGGATGAAGATGAGGGTATCGACCAATTTCAGCAACTTTCCTGGTTTATTTCCGCTGCGGTTGTACTGGCTGACTGGACTGGTTCTGCCAGCCGTTATTTTCCGCGTACTGCGGAAAAAATGCCTGTTGATATCTACTGGCAGCAAGCTCTCGCTAAAGCACAAACTGCCATTACGCTATTTCCCTCAGCGGCGAATGTGTCTGCCTTTACGGGCATAGAAACGCTTTTCCCTTTTATTCAGCATCCCACACCGTTACAACAAAAGGCGCTTGAGCTGGATATCAACGTGGATGGCGCCCAACTCTTTATTCTTGAAGATGTCACTGGAGCCGGAAAAACAAAGGCGGCGCTCATATTAGCTCATCGACTGATGGCGGCAGGTAAAGCGCAGGGACTCTATTTTGGACTGCCGACAATGGCGACAGCCAACGCGATGTTTGAACGTATGGCGAAC # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //