Array 1 53993-45474 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYTR010000015.1 Pseudomarimonas arenosa strain CAU 1598 contig15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 53992 29 100.0 32 ............................. ATCAACAAGCCACCGCGCCAACTTTTCCGGCG 53931 29 100.0 32 ............................. CCCAACGCCGCGCTAACTGGCGTTCTGGCCGA 53870 29 100.0 32 ............................. ACATTCACCACGGTGACGCCAGTCATGCCCCA 53809 29 100.0 33 ............................. CGCGTGTTGTAGACCGTGAATGCTTGCTTTCGG 53747 29 100.0 32 ............................. CCAAAACCGAACCCAAGCACGAAAACTGACGC 53686 29 100.0 32 ............................. CCGGCTTCTTGGTTGCGTCCTGATTACGCACC 53625 29 100.0 32 ............................. GCCGCTTGCCACGCCACCCAGGCGCATTTGAC 53564 29 100.0 32 ............................. TCCACCACGGCAATGCGGTTCCAGCCGCAAGG 53503 29 100.0 33 ............................. CTGATCGCGATATTCCGAAGCTGTTGGCGACAC 53441 29 100.0 32 ............................. TTCGGGTGATAGCTCACGAAGTCCCACCACTG 53380 29 96.6 32 ............................A TCAAAACCGGCACGTCACCAACAGCGCCCGAC 53319 29 100.0 27 ............................. GGCGAGCGCTAAACGCTTGGCGTAGGT 53263 29 100.0 32 ............................. CGCCGGTCGAGCGTCGGCGCGAATCCGGCTCC 53202 29 100.0 33 ............................. GATTGCCGAATCGCGGCGAACCAGTGCCAAGGG 53140 29 100.0 32 ............................. AAAGTCATCACTGTGGTGCTTCCACGTGAAAC 53079 29 100.0 32 ............................. ACGATTTTCGCGAAGTGATCAGCGGCATGTGC 53018 29 100.0 32 ............................. GCCCAGCTCAGTGCTGCGATCAGCCAGTGGAC 52957 29 96.6 32 ............................T TCTTCGGCCTGCTGCGGACTGATCCCCAGGAC 52896 29 100.0 32 ............................. TTGGCCGACGAAACGGCGAGACTCGAAGAGGA 52835 29 100.0 32 ............................. TGCGAAGAACTCGACCAGCTGCCCCCGCGCAC 52774 29 100.0 32 ............................. AACTTGAGCGCGACGGCTGCCACTGCGCGCTA 52713 29 100.0 32 ............................. CCGCTCTCTGCGCCTTCGTGCACCTTCAACGA 52652 29 100.0 32 ............................. GCGATGCCGTTAACATCAACCGGCTCGCGCGG 52591 29 100.0 32 ............................. TCTACTTGTCCAACGGGACACTTAACAAAGCT 52530 29 100.0 32 ............................. ACGCCCGCGGGTTCTGCGGCGCCTCTCCATGC 52469 29 100.0 32 ............................. TGTGCTTGGCTTGGGTACCATCAGGAAGTGAC 52408 29 100.0 35 ............................. GCTGGTCGGTCGATCAGTTCCGCGCCAAGGCGATG 52344 29 100.0 32 ............................. ACTGTTTCATTGCATTGGGCGATTGGCATCAC 52283 29 100.0 32 ............................. TTGCCGGCCCCGTCGTCGGTGGCGGTTTTGGT 52222 29 100.0 32 ............................. GATCACCGCTTGGTGCTCTCGCGACGCCAGCA 52161 29 100.0 32 ............................. ATCAGCAGATAGTCAGCAGAGGCGACGCCGCA 52100 29 100.0 32 ............................. GCGCGGCGAGTCGCGTACGTTCGCGATTGACG 52039 29 100.0 32 ............................. TATGGATGGGCGTTCGATCCAGATATGCAGAT 51978 29 100.0 32 ............................. AACCAACTCACGCAGCCCCACGTGATCGGTTT 51917 29 100.0 32 ............................. TCGTCGTAGTCCCTGAGAACTGCGCTCACCGC 51856 29 100.0 32 ............................. GCACGACGTTGACGCCGGTCACCGGGCCGGAT 51795 29 100.0 32 ............................. TTAACAAACGTAGACCGCTTTGCCTAGTCAGC 51734 29 100.0 32 ............................. TCTCTATAGGAATCGCAATGCAACGACTATCA 51673 29 100.0 32 ............................. CCCATAGATAGGCCGGCACGCTGCCGGCGGTA 51612 29 100.0 32 ............................. GCACCCTTCACGCTCCAATTCGCACATCCATC 51551 29 100.0 32 ............................. GGCAACGCGTTCAGAGCAGGGCTGCTGCTGCC 51490 29 96.6 31 ............................C GCTGGAGTCGCAGCGCTCGCGGCTCGATACC 51430 29 100.0 33 ............................. GCTCTTGCGCCGAGTGGCGATCCGCCGCCGGAC 51368 29 100.0 32 ............................. TCGGAAACGATGCGCCAGGTTCTTCGCCTTCA 51307 29 100.0 32 ............................. GCAGCCGGCGTGTCGAAAGCCGCTATTTCCGC 51246 29 100.0 32 ............................. ACGGTTGACCCCGGGGTGTAGGCTGTTGGGCC 51185 29 100.0 32 ............................. TCTTGGCCGTTGATGTCGCCCTCGCGGCGGGC 51124 29 100.0 32 ............................. AACCACTACGGCTATATCCGCGGCACGGTCGG 51063 29 100.0 32 ............................. CGCTCACCGCTGCCGACATCCGTCAGAACGTC 51002 29 100.0 32 ............................. GTGCTGCGTAACATCCGGGTCAATCGGGCCAC 50941 29 100.0 32 ............................. CCCCTGCACGCCTCCCCCGCTCGCCTCCCTGG 50880 29 100.0 32 ............................. CGTTTTTTCCGCCTAAGGGCGGCACAGATAAA 50819 29 100.0 32 ............................. GGCTGGGAGAAGACATGGACGGGTTGCTGACC 50758 29 100.0 32 ............................. GCGCTTGACTGGGGCCGCGATGTTGAGCCGGC 50697 29 100.0 32 ............................. TGATCGAGAACCACGCCGACGGCATCACTAGC 50636 29 100.0 32 ............................. CACCCGCTTTGACCCGGTCAATGACCTCTTGC 50575 29 100.0 32 ............................. TAGAGCGTAAAGCTCGGCAGCGGAATCGCGAC 50514 29 100.0 32 ............................. CTTGCGGGCCAACGGGACAGACTAATTATTCC 50453 29 100.0 32 ............................. GCCTGCGCCGCATCACTGACCCAACCGGGAAC 50392 29 100.0 32 ............................. AGGGATGCGGCAAGCCATACGGAACGCCTCGC 50331 29 100.0 32 ............................. ACGTTGCGCACGGTGGAGGAGATGAAACAGCT 50270 29 100.0 32 ............................. CTGGGGGCATTGGCTACAACGCCAACCGAGAG 50209 29 100.0 33 ............................. GCGAATTCTTCGTGATCCCTGGACCGCAGTGGC 50147 29 100.0 32 ............................. TTGATTCGGTCCTTCACGTGGCAGCAGTAGAT 50086 29 100.0 32 ............................. CACGCGATGATCGCCGATCGTGCCGAGGCGCG 50025 29 100.0 32 ............................. ACCGAGATGATCCGCCGCGGTCGTTGGGTGGC 49964 29 100.0 32 ............................. ACCAGCCGGAGAGCCCCCATGAGTGAGCATGA 49903 29 100.0 32 ............................. GCGTGAGTCAAAAGAGCGGGAAGCCCTGGAAG 49842 29 100.0 32 ............................. TCAGGTGCCCGCTGGCTGGCGACTGTGCGTGG 49781 29 100.0 33 ............................. GACAATCAATCACCGTGTTTTCTGCTATCCAGA 49719 29 100.0 32 ............................. ATATTGTTGCAGCTCTTGCGCCGCTCTCGGGA 49658 29 100.0 32 ............................. GCTCGGCAGGGAACAACGATCACGCTGGATCA 49597 29 100.0 32 ............................. AGTACACGCACAACTTCATCTGGAACCTGCGC 49536 29 100.0 32 ............................. TTCGCGGCGATAAGCGTTGGGAGAACCCAAAC 49475 29 96.6 32 A............................ AGTTCGCGTTAGAAATTGGCGAGTGCATTTCG 49414 29 100.0 32 ............................. TTCCCAGGATTGGAAAAACGCACGAGCACCTA 49353 29 100.0 32 ............................. AGTGGTTGCCGTCATCCACCCAAGTGATGGGG 49292 29 100.0 32 ............................. GCGTAACCCGCTCCCGCCAGGTCTGCTTGAAC 49231 29 100.0 32 ............................. GCCTGGCTTCAGGCGCGCATGGATGGCATGCG 49170 29 100.0 32 ............................. ACTGGAGCTACCTAGACTCGTATTTTTTGTTC 49109 29 100.0 32 ............................. CCAGGGACGTGAAACACGTCGTCCTGCGGCAT 49048 29 100.0 32 ............................. TTTCGCGATGCCGTACGACCCGCCATCAATCA 48987 29 100.0 32 ............................. CCGGTAGTAGTGGCGCCGAAGCTGATGCGCTC 48926 29 100.0 32 ............................. CTGGTGTTTGCCATTTATGCGCTCGCAGTGGT 48865 29 100.0 32 ............................. TTGTCGACGTCTGTCATCAGAACTCGGCGCAA 48804 29 100.0 32 ............................. AAACTCGGCATCGAGGTTCGGCCGAACACTAC 48743 29 100.0 32 ............................. GAAGTGCTGCGCTGGAAGCAGGCGGCCCAGGA 48682 29 100.0 32 ............................. GCTCGCCGGATTGGTAAACAGTCGCGCCCAGC 48621 29 100.0 32 ............................. ATGTCGGAACCGAACTTGACGGCCATAACGAA 48560 29 100.0 32 ............................. TGCGGCCGTCGGTCGTGGTCACCGCCAGCGTG 48499 29 100.0 32 ............................. TCGGCGGTGAGCTGTCACTGGTACCCGCCACG 48438 29 100.0 32 ............................. GCCGCGACGTCTATATCGAGGACTCCGACCTA 48377 29 100.0 32 ............................. ACGTTTGACAATGGTAATGCCACTGCCTTAAC 48316 29 100.0 32 ............................. CATGCTGTCGAGGGTGTAGCTGACCCCATCGG 48255 29 100.0 32 ............................. CGGTTTGTGGTGCAGGTGATCGGTTGGGGCGA 48194 29 100.0 32 ............................. TCGCTGTGTTGAACATCTCAGGCGGCTTGGTG 48133 29 100.0 32 ............................. TCTGTCTGCTGCAGACGTGTACGAACGCCGAC 48072 29 100.0 32 ............................. ACTTTCCGCACCGATCCTCGCGGCACTTGAGC 48011 29 100.0 32 ............................. GCTGGACTACTGGCCCGGCTGCTTGATCGCGC 47950 29 100.0 32 ............................. GGACTCAGTCCGCGGTACAGCGAGTATCCAGG 47889 29 100.0 32 ............................. GCCTGCACCTGTTCGTTCCACTCTTTGCGGTA 47828 29 96.6 32 ............................C ATCCGCAGCAATAACCAAGGATCAGAAAGCGC 47767 29 100.0 32 ............................. CCGACGGATCGAAGTTGTTGCACGAATGCTAC 47706 29 100.0 32 ............................. GCCTTCGTTAAGCCCGGGCGCCGCGGGGCTCA 47645 29 100.0 32 ............................. CTCATACCTCTGCTCAATCAGGGATCGAAGGG 47584 29 96.6 33 ............................A GTGGGAGGAACTTCCGTCGGGCGCTGTCCTGTA 47522 29 100.0 32 ............................. TTTGGCGCTCAGTGAACTACAACCGGCAGACC 47461 29 100.0 32 ............................. CCCGCCGCCATCACGGCGAGCCCGTAGTTCTC 47400 29 100.0 32 ............................. TACCAATCCGACACCAACATGATTGGCTGGAA 47339 29 100.0 32 ............................. CAGTGACGGCTGACATCGGCGGCGCATTCGAC 47278 29 100.0 32 ............................. GTCGCGCGTATTGAGCATTTGCGGAACTAGCC 47217 29 100.0 32 ............................. ACATGCCCGGCGTCATCAAGATGCCCAGGGTC 47156 29 100.0 32 ............................. GTCAGGGTTCAAACTGAACGCTTCGTTTCGGC 47095 29 96.6 32 A............................ TAGATAGCTGCTTTGTGGCCGGTGTGATCCGC 47034 29 100.0 32 ............................. CTGGGCCAGTGGCGTATCGACTCAGAGCAATA 46973 29 100.0 32 ............................. GCTGGCAAGGGCAGCTACCAGTCCACACGGGT 46912 29 100.0 33 ............................. TTGATCTACCTGTCCCTGATTTCGACGCATGGC 46850 29 100.0 32 ............................. CGCTCAACTCGGCTGCTACGCCGGATGTGGTG 46789 29 100.0 32 ............................. GGCATTCGCTGTGTGTTGATCACGCAAATGCC 46728 29 100.0 32 ............................. ATTTCAGGGTTCCAGGCTCACAGCGCTCAGCA 46667 29 100.0 32 ............................. GCGCACAGGAGCAGGGCGAAAACTGGTCCGCA 46606 29 100.0 32 ............................. TCCATGTTCTGCGCGTTGTGCTTCACCCCAGC 46545 29 100.0 32 ............................. TCGACCTCCGCGGCCGGAGTGATACCGAACTC 46484 29 100.0 32 ............................. GAATGGGTGAGGGTGCCGGTGGTGCTGAAAGG 46423 29 100.0 32 ............................. GATCAATCGAAATTCCACCCTGCACAGGAGTT 46362 29 100.0 32 ............................. TCGTTCGCTGACGCCTGCGCGCAGCTTGGAGC 46301 29 100.0 33 ............................. TTCGAATGGGCATCATGCACATGCTCATCCGAC 46239 29 100.0 32 ............................. GCGATGCCGTTAACATCAACCGGCAGCTCATC 46178 29 100.0 32 ............................. CAATCGCAGAGCAATTCGTCTGACGTGGTGAC 46117 29 100.0 33 ............................. AACGGCCAGACCGCCGGCGATCTACTGGCCAGC 46055 29 100.0 32 ............................. GCCCATAGCCAAGGCTCAGCGCTCGATGGAAC 45994 29 100.0 34 ............................. TGATCGGCCCGATCTCAACGCTTAGCGCGTCCGC 45931 29 100.0 32 ............................. CCGCTCCTCACGGCGCGCAATCTCCTGCAGCC 45870 29 100.0 34 ............................. TGATCGGCCCGATCTCAACGCTTAGCGCGTCCGC 45807 29 100.0 32 ............................. GCACGCCTCGATCCATGCGCCCGGGTGCATCA 45746 29 100.0 32 ............................. CGTTCCGCGAGAGGGACGGGGGCTTGTCAGTG 45685 29 100.0 32 ............................. CCTTTGAGTGCACTTCAGATCCATCGGGCTGC 45624 29 100.0 32 ............................. CGGATGAGCTGGAGTCGTTTGTTAAGCACATC 45563 29 100.0 32 ............................. ATCGTCGCGCTGAATTCAAGCGGCCATGTCGA 45502 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 140 29 99.8 32 GCGTTCCCCGCACACGCGGGGATGAACCG # Left flank : TGGACGAATCATCCCGTTGATCGAGGATGTGCTGGCAGCTGGAGGCATCAGCCCGCCAGCTGCCCCGCCAGAATCTGTGCCGCCGGCCATACCGAACCCGACCGGTCCGGGCGATGTGGGGCATCGGAGTCGCTGATGACGTTTCTGGTTGTGGTGACCGAGAACGTACCGCCTCGCCTGCGCGGAAGACTCGCCATCTGGCTGCTGGAAGTGCGCGCCGGGGTCTATGTTGGCAACGTTAGCCGCCGTGTCCGTGAGATGATCTGGCAACAGCTTGATGCCGGGCACGAAGACGGCAGCGTGGTGATGGCATGGTCGAGCAAGTGCGAATCCGGATACGACTTCCAGACATTGGGTACCAACCGTCGCGAACCCGTGGATTACGACGGACTCCGGCTGGTGGCCTTCAAGCCGCCCGACCCGGCCGATCTTTGACAGTTCAGGTTGGTAGAATTTCAGTCGCTGCTTTTTCGTAGGATAAACAGCGAGTTGGAAGAAGT # Right flank : GCGAACCCGAATTACGGGGTGAACAATGTCAGTTCTACTCCGGCGACAATACGATCACCGGTTGCGTGCCCGGGCCAATCTTTACGCTGCCATTGAATGAGCCTTCGGGGGCGAATACGCTGACGGTAATTGAAGCGAGGTTGGTGCAGTTGAAGGCGGCTGTCGCATCCGCGTCGGACACTTGCACTGCCTGCGGTGACGGGCCGCTGATCGGGGAGGCAATCCAGAGAGTGGTCAAACCAGCAGGTGCATCGCCACTTTGCGTTTCGATCTTGATGGTCTGACGTGGCTGGTACGACTGGGTGGGTTGAGTGAATGCCACTTTTACCGGGGTGGGTTGAGATGGCACAGGCGTATTGCTGTTCGTCAGCACCACATAGGGCGTGAGTGGCAGGAACAACTGGTAGTTGCCCAATGGCGCCGTTGGCTGATCGCTGAAGGTGATGTTCATGGTGACCGTTTGCGACCCAACATCCACAATCACCGAATCCATATCGATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //