Array 1 267691-268390 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWQF01000002.1 Escherichia coli strain MOD1-EC2531 MOD1-EC2531_2_length_380143_cov_23.9843, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 267691 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 267752 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 267813 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 267874 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 267935 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 267996 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 268057 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 268118 29 96.6 32 ....................T........ GGAATAATTACCGCGCTGATTAAATTAATTAA 268179 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 268240 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 268301 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 268362 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTCAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 283892-285139 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWQF01000002.1 Escherichia coli strain MOD1-EC2531 MOD1-EC2531_2_length_380143_cov_23.9843, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 283892 29 100.0 32 ............................. CCCCTTGACCTTAACGCCGCGTTTAGCGTCAC 283953 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 284014 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 284075 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 284136 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 284197 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 284258 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 284319 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 284380 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 284441 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 284502 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 284563 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 284624 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 284685 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 284746 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 284807 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 284867 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 284928 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 284989 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 285050 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 285111 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //