Array 1 149332-145577 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXXY01000001.1 Pseudoalteromonas ruthenica strain S3258 contig0001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 149331 28 100.0 32 ............................ TCAACAAGGGGGCAGAAGCAGTCAGCGACAGT 149271 28 100.0 32 ............................ AGGTTGGCAAATTTAAGATTGCTTCTCGAGAA 149211 28 100.0 32 ............................ TGCTGGCCTTTCTTACTGTGAACGCTATTTTT 149151 28 100.0 32 ............................ CGTTGTCTCGCCCAGGTGCTCGCTAAATGCGT 149091 28 100.0 32 ............................ GCGCCAAAAGGTGGCCGCATGATGCAGCCAAT 149031 28 100.0 32 ............................ GGTTTCAGAAATCATAGGAAGATTAGTTGATG 148971 28 100.0 32 ............................ TTCACCAAGTGCACAAAAGTCTGGTATGGCCA 148911 28 100.0 32 ............................ TTCTGCGTGCCGTAGACGATGCCTAGTGCGTT 148851 28 100.0 32 ............................ ATCGATAAACAGGTTTTGCGCAAATTGGTGGC 148791 28 100.0 32 ............................ TGTTCGCCCTGATAACGTGCCAGTCACTTCTG 148731 28 100.0 32 ............................ TTCTGAATCTTTATCTAATCAACGCAATAAGA 148671 28 100.0 32 ............................ TTTGAATGTTGAACACTTCGTTTCTGTCTTTG 148611 28 100.0 32 ............................ TGCTGCTCGACAATATCCTCATCTGATAATTC 148551 28 100.0 32 ............................ TTCTGGAGAAACTAGCCAAAGAGAGGAAAATG 148491 28 100.0 32 ............................ TCTCAAACTCTCCAAGAGTGCACAGGTTATGT 148431 28 100.0 32 ............................ AGCCAGCAACCGACACCCTCAGACATGATTGC 148371 28 100.0 32 ............................ TGACTTAATGATTAACAACACAACGGGCAAGT 148311 28 100.0 32 ............................ AGCCTTCGCGCTCGTAGACATCAATGTGACCC 148251 28 100.0 32 ............................ AAGATGAAAATAATCACGAAGGCCACGACTCC 148191 28 100.0 32 ............................ ATGAAAAAAGTAAACATCTTAAAAAGCAAACT 148131 28 100.0 32 ............................ AACGGCGTAAGCTCCAATGCAAAATGACATAA 148071 28 100.0 32 ............................ TTGACGGTATTATCGACCAGTTATCAGGTTCC 148011 28 100.0 32 ............................ TGTCTATCAACGTTATTCGATAGCCAATTGAC 147951 28 100.0 32 ............................ AATAGCCTTACGTGTACGAAGCGACAGCGGCA 147891 28 100.0 32 ............................ TGATGACTGTGAGTAATATTTACAAGACTCAC 147831 28 100.0 32 ............................ AATGGTATCTCAGCCTTGAATTTACCTCTCGA 147771 28 100.0 32 ............................ ACTCAAACGATGTGATAATAGCTTTGCATGTT 147711 28 100.0 32 ............................ TGCAAATAATGCTCTTCTTCACCACTGCGAAG 147651 28 100.0 32 ............................ ACCCCTAGACCCCGAAGAAAACTGCTATGAAA 147591 28 96.4 32 .................T.......... AAAAGGCTGGCGTTATTTCGCTTACGGAGTCG 147531 28 100.0 32 ............................ TGAATATGACATCCCTGTTGTTGTCGGAGAAA 147471 28 100.0 32 ............................ TGTGCGCTGGTCGGTCCCGCAGTTATCGCAGA 147411 28 100.0 33 ............................ AGTCATAACCTTCTTCAAGTAGCAACTGAAACT 147350 28 100.0 32 ............................ TTACTATAGAAATCTGCTTGATTCGGTTTCGG 147290 28 100.0 32 ............................ GTCAGTTTCAGCGAGCGAGTTTTCTTCGCGTG 147230 28 100.0 32 ............................ TGGCTTATATCAGCGAGTATCGCCTCAGCGGC 147170 28 100.0 32 ............................ AGCAAGCAAAGCGGGTATTGCAAGTAAAGCAG 147110 28 100.0 32 ............................ TTATCGTTGCTTTCTGCGCGGGCCTGGTTGAT 147050 28 100.0 32 ............................ TATAAAGAAGCTTACAACGCGGTGCTGTGTGC 146990 28 100.0 32 ............................ ATACTTAGCTCGGGCCGCTTCTGAACCTTCTG 146930 28 100.0 32 ............................ TTTGGAAAAGCAATAAACGTTAATGCAGTGAA 146870 28 100.0 32 ............................ GTCAGCATTCAAATAAACACACTGCAAAGCAA 146810 28 100.0 32 ............................ AAATGCGGGGCAAACTGCAATCAAATTTAGAG 146750 28 100.0 32 ............................ ATCGCACCCCCGTTGAAGTGGTGAACGGCAAG 146690 28 100.0 32 ............................ TCGAACAACTCGCGGATTACATCACGGCCAAG 146630 28 100.0 32 ............................ ACCAAGCGCTTTGCAATAAAGATGATGAGTTT 146570 28 96.4 32 ...T........................ ATAAACGTGTAGTGGTGGCTGCGGCCAATAAA 146510 28 100.0 31 ............................ ATAACACTAGGTCTTGCTTTAAGACGTTTGC 146451 28 100.0 32 ............................ TACTCCCAAGTAATGGCAATAGGCAAGTTAAA 146391 28 100.0 32 ............................ ATCCGGCGGAATCAGCGGTAGCGGGGGCCATG 146331 28 100.0 32 ............................ AAGTTAAGGGCGGTTCGCTGGTGTCTGAGTCG 146271 28 96.4 32 .............T.............. GGTGCGAAATACATCACCGACAGCCTGGGCTA 146211 28 100.0 32 ............................ CGATTCTAATGGCGATGGTGTTTTAGATAATC 146151 28 100.0 32 ............................ TTTGGAGTCGTATGGTCGTATCAGCGCTTTTA 146091 28 100.0 32 ............................ TGGCAAATTCTTTAAACGGCTTTTGCTGAGAT 146031 28 100.0 32 ............................ AAACCGTCAGGCAACGCAAAATAAAGAAGTTA 145971 28 96.4 32 .................T.......... CAATGAGCTATAAAGTTAGAAAGCTTGGTGAT 145911 28 100.0 32 ............................ TATCAATTTGGAGCATGTAAGCGCCGCCGGTG 145851 28 100.0 32 ............................ TTGTCTCGGGTGCGGGCAGGGTCGAAACCAAT 145791 28 100.0 32 ............................ AGCCAAAGGCACGGGGCGCTTCCCCTAGATGA 145731 28 100.0 32 ............................ GTTTAAATTTCTGATGCACGATAACAACGGGC 145671 28 92.9 39 ................AT.......... TTTATAATTTATAATTTGTGAGCCATGATTGTCTCTAAT 145604 28 75.0 0 ...T.....T...T.....C....TC.G | ========== ====== ====== ====== ============================ ======================================= ================== 63 28 99.3 32 CTTCACTGCCGAACAGGCAGCTTAGAAA # Left flank : GTACCAGAAGACGTAACATGGGTGAGTTTTACTCGTCAGCATGTTAAATCACCTGGGCGTATTGATCGTGAGATGCGAGGAAAGGCTGAACGGTGGTCGGCTAAAAGTGGTAAGCCTTTAGTTGAATGCTTAGCAGAGCTAGAAAGCACCAAACCTTCTTCAAAATGTGACTTACCTTTTGTTTATTTACATAGTCAACAAACAAAGCAACGTTCACCAGACACCAATAGTAAATACCCTCTGTTTATTGCGTTAGCAAAAGTTGAAATTGACCAACAAGGAGTTTTCGATTGTTATGGTCTTAGCGCAAAATCAAATGGAGATAGAGAGTTGGGCTGTGTGCCACAGTTCTAACAAATAAAGGATTTTTTCCCCTTTATTTTTGTTCTTTAAAAATTTGCTTAAAATACAGTGTGTTGCAACATCCTGTGAAATTAAGGTGAAACTGGGTTTTTATCTTAATAGCTTGTTGCAACTTACTTTTTTTCATTTACTCTATA # Right flank : TGGGTTTGATGTTTTTGAGTTGTGTGTCGTTGAGTGGTTTAACCGTTTTTGCCATATCTACTATTCCCTGAAGGCCTTTAAACTTAAGGCTTTGGCGCAGCGACGTACTACGAGAACGAACACTATGTACTAACTTAGTACATGAAGCAGTACATAAACAACTGAATTTCAAAAAACGTGGGCGTACATTACAGGCATTAAAAAACCCGCTAAGTCTTTATTCTCAGCGGGTTTTAAACGTTTTCGAACTTAATCGAACAGTGAAGTGGTGGAGCTGGGGGGATTTGAACCCCCGTCCGGAAAACCTCGACCATCGGTCCTACATGTTTAGTGTCGTCTTTTGGTTAACCTTTGAGTCTCGGACGCACACGATAAACAAAGGCGAGGCCGCTTAGTTTTAACCCTTCAACCCCGGCCAGGGTTTCCGTAGCGAGTCTGTGTAGGGTGACACTTCAGAACCGGGTCCACAGACATACACCGGAGAAGTGCTAGCGGGCTAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 64553-64308 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXXY01000018.1 Pseudoalteromonas ruthenica strain S3258 contig0018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================= ================== 64552 28 92.9 45 .......................G.A.. GATTTAGTGTAGGTAAGGCTTTTAGCCTTACAAAACAAGTTTCTC 64479 28 100.0 43 ............................ CGGGATTGGGCCAAGCCCAACCTACAGTTTAGGTTGGTTTGTT 64408 28 100.0 45 ............................ CGAGATTGGGCTAAAGCCCAACCCACAGGTTCCGCCAGATGTGTT 64335 28 85.7 0 ......................C.CCT. | ========== ====== ====== ====== ============================ ============================================= ================== 4 28 94.6 45 GTAGGCAAGGCTTCAGCCTTGCAAAGCA # Left flank : CAAGTTTGCGTGAATTAAAGCAGCTTGCAAGCACTCATGGCTTTGCTGATATCGCCGCAAATGAAGAAGATGCTGACACCTTATTACAGCTGCTATTTTGCATGGTGATAGAGCCGACGATTGGCCAGCAACAGCCGTGTTTTGTGTATCACTTTCCGGCCTCGCAAGCGGCACTAGCGCGTCTTCATGAGCAAGACCCACGCGTTGCCGGGCGTTTTGAGCTGTATTACCAAGGGCAAGAGCTCGCTAATGGCTTTAATGAGCTGACCGACGCCAATGAACAGCGCCAGCGCTTTGCCAATGACAACAATAAACGTATTGCTAAAGGTCTTGAGCCCGTAGCCTTGGATGAAAACCTACTAGCAGCACTGGATGCCGGCCTACCACAATGTGCCGGAGTCGCCCTCGGAGTGGATCGTCTCGTGATGATTGCCTGCGGCAAAAAGCATATTCGCGAAGTGCTCAGTTTCGACATCGAACGCGCCTAACCTCAAATTATT # Right flank : TAAATAAACCGAATTCCAGTACGGGTATAATCGCACACTAGAGACAATCCCTTTTCGCAATGGGTTGGCAACGATGTACCTGGCTATGTGAATGCGCTGCTCATCCTCACGCAAAGCGTGGTCATAAAACCCGCTTTGCCAAACTTTACCGCGACGCTGTAATTGACGATTAACCATGGCTGCGGTGCAACCTTTTAGGTGCCGTATACAAGCGCTAAGATCGCTATGGTGCAGTAACACAAGCCCATGGAAGTGGTCTGGCATTAAGACCCAGGTTAACCATTGGCAGCCGCAAGCCTGCTCATTAGTTGTAATCGTGGTGCAAAATAGCTGTGCTAGTTTCGCAGAGGCAAAAAATGGTGTGCGTTTGTAACAACAAAAAGTAATAAAATACTCGCGGTGAATTTGCGAATAACGTCCTTTTAATAAATCACTATAAGGCATATTCAGCTCCTTTGAATATGGTGGACATTTAATTATAGCTCGAGAGTTACAAGGTT # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGCAAGGCTTCAGCCTTGCAAAGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //