Array 1 2639233-2638665 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025705.1 Aeromonas caviae strain R25-6 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2639232 28 100.0 32 ............................ GCCAGGGTGCAGCTTGGTGAGGCTATTGAGCC 2639172 28 100.0 32 ............................ TGTCTGCACGGCAAAAAAGCCGGCTGGATGAC 2639112 28 100.0 32 ............................ GGTATCCGGCGGGCCAGGGTGAACACGTCATT 2639052 28 100.0 32 ............................ TTTGATGTCGCGCATCACGCCATCGAACGCCT 2638992 28 100.0 32 ............................ ACTGGTGCCAACCTGTCTCGCCTATCCAAGAA 2638932 28 100.0 32 ............................ ATGAACAACACTTTGAAATGGGGTGTGATTTC 2638872 28 100.0 32 ............................ AACGTCAGCCTCGGAGATCAGGTGCTGGCCAT 2638812 28 100.0 32 ............................ GCAGTCGTAATAGCCGAACTCTATGACGTTGC 2638752 28 100.0 32 ............................ TGGATAAACCACGCGATGGTCTGGTCGTTCAC 2638692 28 82.1 0 ..................TCA....TT. | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.2 32 CCTCGCTGCCGCACAGGCAGCTCAGAAA # Left flank : GCGGTGTCGTGCGTCGCCATCACATGTATGACCAGACCTTTCAGCGCGCCTTCAAACGTGCCGTAGAACAAGCAGGCATCACGAAGCCCGCCACACCGCACACCCTCCGCCACTCGTTCGCGACGGCCTTGCTCCGCAGCGGTTACGACATTCGAACCGTGCAGGATCTGCTCGGCCATTCCGACGTCTCTACGACGATGATTTACACGCATGTGCTGAAAGTTGGCGGTGCCGGAGTGCGCTCACCGCTTGATGCGCTGCCGCCCCTCACTAGTGAGAGGTAGGGCAGCGCAAGTCAATCCTGGCGGATTCACTACCCCTGCGCGAAGGCCATCGGTGCCGCATCGAACGGCCGGTTGCGGAAAGTCCTCCCTGCGTCCGCTGATGGCCGGCAGCAGCCCGTCGTTGCCTGATGGATCCAACCCCTCCGCTGCTATAGTGCAGTCGGCTTCTGACGTTCAGTGCAGCCGTCTTCTGAAAACGACAGCGATGGTGGACAT # Right flank : CTGGTTGCAGCTAAACCGGAAGGGCCGCTGACTGCAGGTTCATTCCACTCCAAGATCAGTGCAATGCTGGTTATTGAGCTACTGGGTCAACAGCTATTGGAAAATAGGCCAGAGCTGGCGGGAGCTATCTCGGATAGTGCCAAGGCTACGTTGCCTTGGTTGATACAATCGCTAGCGAGGGGAGCATCATCAATACTTGGACACCAGACTGGATCGATGTCCAATGTAATCCATCCGGGTAGTATGTCAGCCAACATCAAATGGCACACTGAGTGGCATACCACAAAAATATAAAAAATTAAAAACCCAACCTAATCAATAGGTTGGGTTTGGTATGTGGCGGAGAGACAGGGATTCGAACCCTGGGTGGCATTGCTGCCACAATTGATTTCGAGTCAATCCCGTTCGGCCACTCCGGCATCTCTCCACGGGCACTCATATTGACCCAACCCTAGCCGGGAAATCAATGTAAATCTCGTTGCAGATCAGACGACTGGCGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCGCTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCTCGCTGCCGCACAGGCAGCTCAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2664706-2660898 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025705.1 Aeromonas caviae strain R25-6 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2664705 28 100.0 32 ............................ AGCCTGCTGGGCCCCGTAGGGCTTGTATCGGA 2664645 28 100.0 32 ............................ TGCGGAAAAGCCCGCTGGCGTCTTCGGCCATC 2664585 28 100.0 32 ............................ ATGGCCCAGCGCGGCGATGCCCTGGTGTTTGA 2664525 28 100.0 32 ............................ AGATAAAGCCACGCCATTCGGTCAACAATGCG 2664465 28 100.0 32 ............................ ATCCCGACGATGATAGCGAGCATCATGATGGG 2664405 28 100.0 32 ............................ AGTACGTCGGCCCGGCTAAGTTGGTGGCGGCG 2664345 28 100.0 32 ............................ CAGGAGGAATTCGACTACCTGATGGACCTTGA 2664285 28 100.0 32 ............................ TCACCTACACCCCCAAGAAACGGTACGACCAC 2664225 28 100.0 32 ............................ ACATATATCTCGGTTCGAGTAACGTTGCTGGA 2664165 28 100.0 32 ............................ TGGCAGAGCGTGATCCCGAACATGATCCAGCT 2664105 28 100.0 32 ............................ ACCGATGGGGCCACCGAACGACGCCAGGGCGT 2664045 28 100.0 32 ............................ TCAGCGAACGTCGACCCGGACATCATCATCTC 2663985 28 100.0 32 ............................ AGCTTGACCTCGGTGGGGCACTCGTCGAGAAG 2663925 28 100.0 32 ............................ TGGGGTGGCTACCGCGACCACCGCGACCACCG 2663865 28 100.0 32 ............................ GACAACCAAGACCGACCCTTTCGAAGGAAACA 2663805 28 100.0 32 ............................ AGGATGACCCCATGGCCCAAGCCATGGTGGCG 2663745 28 100.0 32 ............................ TGGGAAATCGAAGTGCGGGGCAACATCCAGGT 2663685 28 100.0 32 ............................ GACCTGCGCTATGTCCTGCTGACCGATGACTC 2663625 28 100.0 32 ............................ AAGAACTTCTTCGGCTTCGGCGATGACGAGCA 2663565 28 100.0 32 ............................ ATCGGCAGCGTGAAGGACGCGCTGCAGGCGCT 2663505 28 100.0 32 ............................ GTGAAGGTGACATAGGCCACCCCATCTTCTTC 2663445 28 100.0 32 ............................ ACCGGTTAGAGGATGTGTGGGGCAGCGTGGAT 2663385 28 100.0 32 ............................ CGTTCGGCCAGGGCCGCCCGGATGTCGGTTCG 2663325 28 100.0 32 ............................ AGTTCAAGGAGCTGTTCGGTTATGGCTCTGAC 2663265 28 100.0 32 ............................ CTGCCTGTTTGGCCAGTTGAATGAGCGGGCAT 2663205 28 100.0 32 ............................ GTCGAGAGATAGATTAGGCGAAATCCGCCTAA 2663145 28 100.0 32 ............................ TACAGGGCATTGGTGCCAATGTAAAACCGCTG 2663085 28 100.0 32 ............................ GGTGGCCTGCCGAGCGGCATCCTCAGCGATGC 2663025 28 100.0 32 ............................ TTGGCGGCCTGTTGCGGCATAGGCGGCAAAGA 2662965 28 100.0 32 ............................ TCGACGGGGCTTAGTGTGATCTGCCGGGATAT 2662905 28 100.0 32 ............................ AGCACCCGAGTGGATGTGCTCGACGAGGTGAC 2662845 28 100.0 32 ............................ ATGCTGACCCACATCATGGTCAAACTGAAAGA 2662785 28 100.0 32 ............................ ATCATCGGATCCGGTTGCTGGGCCTGAGCCTG 2662725 28 100.0 32 ............................ AATGGCGATGGAAAGCTGTCAGCGGAAGAGGC 2662665 28 100.0 32 ............................ ATATCCAGGTACAACTTGAACTCTCCAACATC 2662605 28 100.0 32 ............................ CAGCTCATGGATGGGCAGGTCGGGCGGACATC 2662545 28 100.0 32 ............................ CCGACGAGCCCGAGCTGGTCGCCGCTGCGCAA 2662485 28 100.0 32 ............................ AGATTGGCAAATCCGCATCATCACCACCATTC 2662425 28 100.0 32 ............................ TACCTGAAATTCAGTGAGCCGGGTATGGGGTC 2662365 28 100.0 32 ............................ AAGAAAAGCACCGACAGTACCGAAAGCACCTC 2662305 28 100.0 32 ............................ AATAAAAGCAATCTGGAGCGCGACCTCGATAA 2662245 28 100.0 32 ............................ GGTACCGTCGCGAAAGCGGCCACCCCGGTTGC 2662185 28 100.0 32 ............................ ATCATCGGGTAGGGCTCGTCGTAGGCCGTCAC 2662125 28 100.0 32 ............................ GGTAACAAGCAGGTTGCGGGGGAATACGCCAT 2662065 28 100.0 32 ............................ GGCAGCACTCCGGTCACGCAGATCATTGTCCC 2662005 28 100.0 32 ............................ TGTCGGGCATGACGTGGAACGGTAACCGCCTG 2661945 28 100.0 32 ............................ AGGAAGAGCAGCAGGAAGAAGCCGCATCCGCA 2661885 28 100.0 32 ............................ ATGACGGGCACCGTACCGGATTTCTTGCAGGA 2661825 28 100.0 32 ............................ TGACCGCGCAGTACAGCGCCGCCCTGCTGGCC 2661765 28 100.0 32 ............................ CAGAGCGCCAATGAGCGAGCTACCTGGGAGGC 2661705 28 100.0 32 ............................ AGTAAGATAGACGGTAGAGACAAAGGGGCTTC 2661645 28 100.0 32 ............................ GGCAGGATCGCCACGCCGTCGCGGAACTCCAC 2661585 28 100.0 32 ............................ TGCAGGACCGTGGCTACAGCGTCAAGTTGATG 2661525 28 100.0 32 ............................ GGGATCGACATCGAGCTTGGCAAGGCTGTGCT 2661465 28 100.0 32 ............................ CCGACGCGATCCCGCCTGTGGATCAAGCCTAT 2661405 28 100.0 32 ............................ AGCTGCGGGAACTGGGCCTTGATGTCGGCCAC 2661345 28 100.0 32 ............................ TGTCGGGCATGACGTGGAACGGTAACCGCCTG 2661285 28 100.0 32 ............................ TACTACGCCAAGGGCAACTTCACCTACAACCT 2661225 28 100.0 32 ............................ TCGAAAAAGAACTACTGTCCTGTTACCAACCA 2661165 28 100.0 32 ............................ AATGGAGAAAATCGTCATGGCACCAAGAAAAG 2661105 28 100.0 32 ............................ AGTGACTCCACGGCCTGTTTAATTGTGTTCAT 2661045 28 100.0 32 ............................ ACATTGGTGATGCCTGCCGCTGCGATCTTCCC 2660985 28 100.0 32 ............................ AGGAACGCATTACCTCCTGCGCCGATGTTGTG 2660925 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 64 28 100.0 32 CCTCGCTGCCGCACAGGCAGCTCAGAAA # Left flank : TGGCCGAACTGCTTAACCTTACCGAGGTGAACTGGTTGCAGGGGATGCGGGACTATATCCAGCTCGGCGAACCAGAACCCGTTCCTCAGGGAGCCAGCTTTCGTGTGGTAAGGCGGGTGCAGGCCAAGAGCGCTCACAACAAGCGTCGCCGCTCGGTGGCCAAAGGCTGGTTGAGCGAAGAGGAGGCGCAGGTTCGCATCCCCGATGCTCAGCAGAAGGCGATGTCTCTGCCTTATGCCGAAATGCACAGCCTCTCGACCCAAAGCCGGATGCGCCTCTATATCGAACACGGCCCTCTGCTCGATAAGCCTGTCGCCGGGATGTTTAACGCCTATGGGCTAAGCACCACAGCCACCATCCCCTGGTTCTGACCCTCTTTTTCAGGGCGTAGCTAACTCATTGATTTTTCAATGTCTGTTACGCCCTGATAAAAATAGGGTTCAGTGACGGATTTGGGGTAAGTTCTTTAACAATCAATTAGATAGCACTAATATGTAACA # Right flank : TCTGGCTGGCCGCGCTCGGCGATTGTCATTTTCAGAAGACGACTGCACCAGTTGATTGGGCGTAATGGCTGTTGTGCAGCCAGCTCCTGACAGTTCAATATCAGAAGTGATCTGCACCAATCTCGACTATGCTCAATACTCGTGTGCACCAAAGCGAGGTGAGCATGGCGACGGAGGCTCTGTTGCAAAGATTGGCGGCAGTCAGAGGTAGGCTGTCGCTCTGCGCCGATCAGGCGGCTGCTGCGAAATGGTGGTTGAGCATGCCCATGGCCTCCGTCAGCGCCGAGGGCCCAATGCCAAAAGCTCTCTCCACAAGGCGCACCTCGCCCCTGATGCCGGGCTGCAGGCACCAGGGGCGAGCCTGTCCTTTGCGCAGGGCTCGCATGACTTCGAATCCCTTGATCGTGGCATAGGCCGTGGGGATCGATTTGAAACCGCGCACCGGCTTGATCAGTATCTTGAGCTTTCCGTGATCGGCCTCGATCACGTTATTGAGATAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCGCTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCTCGCTGCCGCACAGGCAGCTCAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //