Array 1 7643-7968 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQXV01000012.1 Methanothermococcus thermolithotrophicus DSM 2095 F555DRAFT_scaffold00044.44_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 7643 37 100.0 36 ..................................... TTTCAATAAGGTTTCTTATTTCTATCCATTCTTCGA 7716 37 100.0 33 ..................................... ATAACCGCTTATGAGGCATTGGGGCTGGAAAGG 7786 37 100.0 34 ..................................... ACCTTCTACTTTTTGAATGATTTTTATTTAAATT 7857 37 100.0 38 ..................................... TTTTTTTCTGTCTATCAAATCACAAATGTACATTTCTT 7932 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 100.0 36 GTTTCCATCCTTGTTTTAATGGATGAGTCTTTCAGAC # Left flank : CACATTTTAATATTGATTTTTTAATATTCACCCCATAGTTAATAAAAACAATTTCATCTGCAGGTATTTCAAGAATTGATTTACCTAAGTTGTCTTTTTTGAGAATATATAGTTTCTTCATTGTCAAAACAATAGAAACCTGCCGTAAAGAATCCGTACTACAAATATTAAACGAAACAACAACTTTATCATCCTCAGAAATTAATTCTAAAATATCATAAGTAACAAGATTACTTTGTCCAAATTTTTTCATAAAAATACCTCTTTGGTATTATTATATATGTAACATAAGACAAACACAAATTCCCATCCCACAATAACCGGATTTTAACAAAACATTGATGAGGAAAACATAAATGTTTTGAAGAATGTTCCCATCCTTGTTTAATCAAACAACGTAGTTGTTTGATTTCCAACCTTTAGAAAAGGTTGGATCCAAATAAAATAATGGATGAGTCTTTCAGACTGAAATTTAGAATTAAAAAAGTTTATAGAGAGAC # Right flank : TTTTTAGATA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTTGTTTTAATGGATGAGTCTTTCAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 302-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQXV01000020.1 Methanothermococcus thermolithotrophicus DSM 2095 F555DRAFT_scaffold00036.36_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 301 30 100.0 40 .............................. TGCTCAGGCAGGGGAATATAAAAGTGATTGATGTTGAATT 231 30 100.0 37 .............................. AAAGTCCGAGCACAAGACAATAAAATATCATATCTAG 164 30 100.0 37 .............................. GACCAAAGTGCAATATATGCGTCTGGGAAATTGGCAA 97 30 100.0 37 .............................. CAGTAAAGAAGATTCCTACAAGGTTTTGAATGTAGAT 30 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 5 30 100.0 38 GTTAAAATAAGACCATAGTGGGATGGAAAT # Left flank : GATGTTCTGAAATGGTTTTTAAGGTCGATGGAGATTATGATTTAATAAAATTCGGTTATGAATGTGGTTTTGGAGAGAAAAACTCAATGGGTTTTGGAATGGTTAGAGTTGCCTAAATTTTTTTATTTTTTAATGCTATCCTTGGTAATTATTTTTATTTTTTTATTTTATAGTTTATATGTTTTTTAATTCTGATTTTAAGGATAAATAGGCGGTCTCGAACCGACCATGTTTTATGATTATTTTACATATTTAGATGTTAGAATTTATTACGATTCAGCTTAGTTTAGGTATCATAGTTAGTTTTATCATATTTTCCTTATAATTTATGTTTATTTTTTTGTTTATGCAACTGCATGTTCTTTATTTTAAAAAATAAAACCAACTATCAAGTCGCACGTCTTTATATATGGAGCTCCAAATCATAGGTTCGAGATAAAAAGTTTTAAATAAGGGGAGAAACAACCTTCTTTATAGGGAAATAAGGAAAATTCTTAACT # Right flank : T # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAAGACCATAGTGGGATGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 296-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQXV01000022.1 Methanothermococcus thermolithotrophicus DSM 2095 F555DRAFT_scaffold00034.34_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 295 31 96.8 36 ..............................A CCACAAAATATTTAATAGAATTTGCACAAAATCTAA 228 31 100.0 36 ............................... TTAAATAATAAAGTTCCTTTGTTAAATCATTATTGC 161 31 100.0 35 ............................... CTCCTGAGCAAACAACACAAAGATTGAAATTACTG 95 31 100.0 36 ............................... TTCTTCGATGTCTTCTTCTGATAAGTTTGCAAACGA 28 28 90.3 0 ............................--- | ========== ====== ====== ====== =============================== ==================================== ================== 5 31 97.4 36 GTTAAAATAAGACCATAGTGGGATGGAAATT # Left flank : TCCTCTTTATTCATGGTTTCACCATATTTTATTATTTAACTCAATAGTACATATATTATGGTCATGACTTTTAATTTTATTGATTATTTCTTTTTTCTTTAATTATAAAATTTTTTATCATATTATAAATTAATAATTATCCAGATAATTTCTTTTGTTGTCTTATTTTATTGATTATCCATCCGCGTATTATTCATTAGGCGTTATATGTGGAATCTCGAACCGACTACGTTTTATGATTATTGTATATATTTAGATGTTAGAATTTACTAAGATATTGTTTAGTCATGGTGTTAGAGACCGTTTTGTCATATTTTCCTTACAATTTTTGTTTATTTTTCTAATGTGATTGATTTTAGATTTTTATTTTAAAGAATAAATCCAATTATCAAGTCGCACGTCTTTATATATGGAGCTCCAGATCATAGGTTCGAGATAAAAAGTTTTAAATAAGGGAAAATACAACCTTCTTTATAGGGAAATAAGGAAAATTCTTAACT # Right flank : A # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAAGACCATAGTGGGATGGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 20044-19690 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQXV01000027.1 Methanothermococcus thermolithotrophicus DSM 2095 F555DRAFT_scaffold00029.29_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 20043 28 93.3 37 --............................ TTTCTTCGATGTCTTCTTCTGATAAGTTTGCAAACGA 19978 30 100.0 37 .............................. GCTTCTTTGTTGCGGTATTTTTGATAAGCTATTTTGA 19911 30 96.7 35 ...................A.......... ACGTATATGGTACCATCTTGAGATATAGCAGGGGA 19846 30 100.0 32 .............................. CTAATAGCCCGTGCTGCTCTAAGATTTGACAG 19784 30 100.0 36 .............................. ATATCTTGAAATCTATGTAGCTAGACTTGGAACCTT 19718 29 93.3 0 ..............T.-............. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 97.2 36 GTTAAAATAAGACCATAGTGGGATGGAAAT # Left flank : | # Right flank : TATGCGTTGTTTGTGTTTATAACTCTTGTTGCTGTTGTTAAAATCAGACCATTTATTTTTGGCATTAAGACTTTTTAAAGGCTTGAATTAGACCACCAAATTCCGAAGTAATTTTGAGAAAAACAAAAGATTGAGCATGATAAGTGATAACATAATTAATTTAAATAAAATTATATTATTATTTAAGAAAATTATGATATTATTTATCGTTTCATTAATGGGAATTACCATGTATTTAATAGGAATAACCATACTTACTAAAACAATCCCTATTTAAGTAAAGATTAAAATAAGGCCACCAAATCGAAGGAATTTTGAGATTTGAAATAAAAATTAAAAAAGAATAAAGAAAACTATTTTAAAACATTCTCATACTTAAAAATCAAATCAGTTATTTTTCTTATGTCTCTACCTTGCATTTTAGCCTCATTTAAATAGGTTGCATAAAGTTGCTTTGTCATTACTCTTGGATTTGATTTCCAACTTTCCGAATGAAGCAT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAAGACCATAGTGGGATGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 11-263 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQXV01000028.1 Methanothermococcus thermolithotrophicus DSM 2095 F555DRAFT_scaffold00028.28_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 11 37 100.0 36 ..................................... ATATACAGGTGCAATATCTTCTGAAAATATTATTAT 84 37 100.0 36 ..................................... ATTATTAGATGAAGCAATTTATTTAGATAGGTATGA 157 37 97.3 33 .........................A........... ATATGGAAGAAATAAAAGAAATAAAAGATATTG 227 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 99.3 35 GTTTCCATCCTTGTTTTAATGGATGTGTCTTTCAGAC # Left flank : CCGTTTCCAGG # Right flank : CCCTATGCTTTCTACCTTTTTTTATGGTTTTACTAGTTTATATGTCTTTCTATTTTTAACCTATTTTTCTTACTGGTTGATTATCAAATAGCATATAAAAGCAAGAAAGCAAAATTAGAAAAACTAATATATAATATTAAAAATATTAATAACATCATCCAACGGCAATAGAAACAGAAACCCCATCTTTTTTAAATTTCTTTAAAATCAATTCAATATCTCTTATATTTTTATCAGCTAATTTTTCAACACCCAATACAGAAACTGGCTCAGAAACTCCATAAACCCCTATGGTTTTAAAAACAAAATCGGATTTTATTAAATCGTTTCTAAATTTATAAACTTCATTTATTTTATCCCTATTAATTATAAATAACTCTTTTTTAAATTTTTTAACTGCATCCAAAATTCCCTTCTCATCCTTTTTAACATCAACGGTGGCAAAGGCATCTATTCGCCAAACTGGAATATCCCTTAAAAATAACGCCTTTTTAACTGCC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTTGTTTTAATGGATGTGTCTTTCAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.20,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 29849-30391 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQXV01000037.1 Methanothermococcus thermolithotrophicus DSM 2095 F555DRAFT_scaffold00019.19_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 29849 37 100.0 36 ..................................... ATAAAATATAATGGAGGTTGAGCGTAATGAAGAGTA 29922 37 100.0 33 ..................................... TCATTAATGGATGATTATGACACCGATACAACA 29992 37 100.0 37 ..................................... CTTTTTGAGGTGGTTTTATGGGCTTGATTGTTGAAGT 30066 37 100.0 36 ..................................... AATGCGAATATATGGAAATCCCAAGTCCGTTTCCAG 30139 37 100.0 36 ..................................... ATATACAGGTGCAATATCTTCTGAAAATATTATTAT 30212 37 100.0 36 ..................................... ATTATTAGATGAAGCAATTTATTTAGATAGGTATGA 30285 37 97.3 33 .........................A........... ATATGGAAGAAATAAAAGAAATAAAAGATATTG 30355 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 99.7 35 GTTTCCATCCTTGTTTTAATGGATGTGTCTTTCAGAC # Left flank : TCCTATGGATGTAAATTACTTAAAAAATCACACAATCACAAACAGATGAGAAAATTTACAATCCAGAGAATCTTAAGGGAAGTCCGAGCTCAGGTTATTGATAAAGATGAAGGTTTGAGGAATATTTTAGAAGTGCTGAATTTATAAGTTCCTATCTTTTGCTGTTTCTGTTTCCTTCTTTTTTTTTGAAATATAACGGAATGTTTCCATCTTTGTTTAATCAAACAACGTAGTTGTTTGATTTCCAACCTTTAGAAAAGGTTGGATCCAAATAAAATAATGTTTTTCAAACTTATTCTTTTTTTAACATCCTTTTAACTTATATTTCCATCCTTGTTTAATCAAACAACGCAGTTGTTTGATTTTTTAATCGAAGTAAATCCTAAGGATTTACTGACTCACGAAACTGAAGGTTTCGTCGAGAATCCGTAGGGATTTTAAGATAATGGATGTGTCTTTCAGACTTGTGATTTACACGAATGTATAGATTGTGAATATTA # Right flank : CCTATGCTTTCTACCTTTTTTTATGGTTTTACTAGTTTATATGTCTTTCTATTTTTAACCTATTTTTCTTACTGGTTGATTATCAAATAGCATATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTTGTTTTAATGGATGTGTCTTTCAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.20,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 35937-36223 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQXV01000042.1 Methanothermococcus thermolithotrophicus DSM 2095 F555DRAFT_scaffold00014.14_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 35937 30 100.0 33 .............................. TTCTTTACCTATTACCTCGTCTATTTTTTCAGT 36000 30 100.0 37 .............................. CTTTTATAATGTAATCAATTTCATTTATATGACAGGG 36067 30 100.0 33 .............................. AACGTAAAAATGTTTTTAGAGTGGTAAAACGGT 36130 30 100.0 34 .............................. CAATCATTGAAGTTGATGCAGATACTATATCTGC 36194 30 96.7 0 ................T............. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 99.3 34 GTTAAAATAAGACCATAGTGGGATGGAAAT # Left flank : TGAAGATATTAATAAGTATTTCAAAAGTATTAAATCAGAATTCTTCAATATCGTAAACAAGGATGAAATAAATATATTTGATAAATTAAACAATGAAATAATAAATAACTTATAATATTTTTTTATTTCTTAATAGTTATCCTCGTAGTTATCCATATTTTTTAATTCTATAGTTTATATGTTTTTTAATTTTGATTTTAAGGATAAATAGACCGTCTCGAACCGACCACGTTTTATGATTTTTTTATATATTTAGATGTTAGGATTTATTAAGATCTAGCTTAGTTTAAGTATCATGGTTAGTTTTATCATGTTTTCCTTACAAATATTGTTTATTTTTTAGTTTGTGCAACTGCATGTTCTTTATTTTAGAAAATAAAACCAAACAACTAGTCGCACGTCTTTATATATAGAGCTCCAGATCATAGGTTCGAGATAAAAAGTTTTAAATAAGGGAAGATACAACTTTCTTTATAGGGAAATAAGGAAAATTCTCAACT # Right flank : AGTAGCTCATCAGCTAGTAGTTT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAAGACCATAGTGGGATGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 37470-37909 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQXV01000043.1 Methanothermococcus thermolithotrophicus DSM 2095 F555DRAFT_scaffold00013.13_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================================================== ================== 37470 36 81.1 79 A.....-........GA........T...C.C..... CCAACCTTTAGAAAAGGTTGGATCCAAATAAAATAATGTTTTTCAAACTTATTCTTTTTTTAACATCCTTTTAACTTAT A,C,CG [37478,37482,37486] 37589 37 100.0 31 ..................................... ACATTCAAAGAATGTTCTTAGAAGTTAATGG 37657 37 100.0 37 ..................................... GATGCATACGATGAATATTATCAAACACATAAGAAAA 37731 37 100.0 32 ..................................... ACAAACAGATTTATTGGCCGACGATTGGTGTA 37800 37 100.0 36 ..................................... TATCCGACTAATAAATAACGGGCTCGAATTTCTTTT 37873 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================================================== ================== 6 37 96.9 43 GTTTCCATCCTTGTTTTAATGGATGAGTCTTTCAGAC # Left flank : CAGATGAGTTATTTGCAGGTTACAATAGGTATAAAAGAATACTTCATGAAAAAGGCGAGGAAGAATTAAAAAAATCTATCTACGAAGATGTCATGAATATATACAAGGTAAATCTCGAGAGGGACGACCACTGTACAATGGCAAATGGTGTAGAGCTCAGAGTTCCATTTTTGGATAAAAACGTTATTGAGGTAGGACTTTCCATACCCACTGGGCATAAATTAAATGAGAGCTCTGAATTTAGAAAAAAGATATTGAGGGATATCGCATCAAAGTATATTCCAGATTACATAGCCTATCGACCAAAAAAAGCTGCCCAGTATGGAAGTGGCAGTGAAAAAATGATATATGCAGTTGCAAGAAAATATGGTTACTCAAAAAAGAAAATAAATGAATTCTTTGAAAGTGTTTTAATAGAAAGGATAAAAGTGAATAAATTATAATTTCTTTTTTTATTTTTTGCTGCAAGTAGTGATGGAATTTCTTTGAAATTTCATAGG # Right flank : ATTTAAATAAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTTGTTTTAATGGATGAGTCTTTCAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 44092-43730 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQXV01000045.1 Methanothermococcus thermolithotrophicus DSM 2095 F555DRAFT_scaffold00011.11_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 44091 30 100.0 33 .............................. AACGTAAAAATGTTTTTAGAGTGGTAAAACGGT 44028 30 100.0 34 .............................. CAATCATTGAAGTTGATGCAGATACTATATCTGC 43964 30 96.7 38 ................T............. AGTAGCTCATCAGCTAGTAGTTTTACCTCTTTTTTACA 43896 30 96.7 38 ................T............. TGCAGCTATTGCTACAATCACTTGTGACATGTGCTTAT 43828 29 93.3 38 ........C..............-...... TATTTAGTTTTAACATATTTTAATAATGCCTTTTGAGC 43761 30 80.0 0 ........C........A.TC..A....T. | AC [43744] ========== ====== ====== ====== ============================== ====================================== ================== 6 30 94.5 36 GTTAAAATAAGACCATAGTGGGATGGAAAT # Left flank : | # Right flank : TAAGTAGTAAAACGTTAGGTTTTATATACCTACTCAACGAAGTTGAGTAGGTATCTGGTTTTGGAATCCAAACCTTTTTCTAAAAGGTTTGGAAGTAAACCATAATATAAACTAAAATAAACACAAAAACATCAACATCAATAGCTTTTAAGGATTTGTATGCCTTTTCAACAGTTATTTTTCCAGTACCTAATCTATAATACCCTATTTTTTCCAGAGTCATATTCAAAGCATTTGCTATTGTGGCCATTGTGTATCCAGAGTTTGGAGACGGTGTTTTATGCCCTTCCTTTAAAAATCCAATAAATGCTTTTTTTGCACTTCCTCCATAAAGCGGTGCAGAGATAATTAAAAGAATTCCAGCAATACGGGATGGGATAAAATTCAATACATCGTCTAAACGAGCTGCGAATTTTCCATAGTAATAATACTTTTTATTTTTATATCCTATCATGGCGTCCATCGTATTCACAGCTCGGTATATAAACGCACCAGGGAGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAAGACCATAGTGGGATGGAAAT # Alternate repeat : GTTAAAATAAGACCATTGTGGGATGGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 58322-58684 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQXV01000048.1 Methanothermococcus thermolithotrophicus DSM 2095 F555DRAFT_scaffold00008.8_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 58322 30 80.0 35 .A....T..GG.A........G........ TCCTTTTGTGTCCCTGTCCTGTTGCAAGATACAGG TTG [58336] 58390 30 100.0 36 .............................. GGTTTATGACGAAGAAAAGCTTGACATGTCAAGTTA 58456 30 100.0 37 .............................. ATCTACATTCAAAACCTTGTAGGAATCTTCTTTACTG 58523 30 100.0 37 .............................. TTGCCAATTTCCCAGACGCATATATTGCACTTTGGTC 58590 30 100.0 37 .............................. CTAGATATGATATTTTATTGTCTTGTGCTCGGACTTT 58657 28 93.3 0 ............................-- | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 95.5 37 ATTTCCATCCCACTATGGTCTTATTTTAAC # Left flank : ATATTTACACCAATATTTGGCATACTAAATTTACCGGGAGAAGCAGTAATGGTTTTAGTTGCAAATTTTGCCCATTTCTCCGCAGGATATGCTACTGTGGATATATTAATAAAAAATGGAGTGTTAAATGAAAAACAGGCATTATTAACACTGTTAATTGGAAATATAATTGGGGTGACTATGATATATTTAAAACACTCCATAGGGACCTATGTTGCATTATTTGGTAAATTCGGTCTAAAATTAGCCATGATTAATTATACTATATCGATTATTATAAAAATTATATTAATAACCCTTGTAATGTTGATACTTTAAATTAAAAAAGAACTAGTAAAAAACCTAACGGTTTCGATTACGAAGTGAGCGAATAATAAAATCGGAGCTCACGAAGTGAGCGTTATGAAAATCATAGATTTTCAAAACCCTTAACGGGAAGAGCTATAAAATCACGAAGTGATTTTATTCAATGCGAAGCATTTTATCTAATTTACTACTCA # Right flank : | # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCATCCCACTATGGTCTTATTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 51400-51159 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQXV01000047.1 Methanothermococcus thermolithotrophicus DSM 2095 F555DRAFT_scaffold00009.9_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 51399 30 100.0 42 .............................. CTTTTTGTGTTCTCTCATTTAGTTCTTCCTTAGATTTTTTAC 51327 30 100.0 37 .............................. GAAATAAAATCTGACATTTTTTTTACCTCCTTTATTT 51260 30 96.7 39 ........A..................... TTTGCAGTCGATAAATGTAATGGTGAAAGGGGAATTTCT 51191 30 90.0 0 ................A..A....A..... | AAA [51166] ========== ====== ====== ====== ============================== ========================================== ================== 4 30 96.7 40 GTTAAAATCAGACCATTGTGGGATGGAAAT # Left flank : ATTTTATTTGTTTATTGTTTTTATTTTTCAAATACAAGCATAGATTACCAATCTCGAACCGATCACGTTTTATGATTGTTGTATATATTTAGATTTAATAATTTATAAAGATATTGTTTAGTCATGGTGTTAGAGACGGTTTTATCATGTTTTCCTTACAAATATTGTTTATTTTTTTGTTTATGCAACTGCATGTTCTTTATTTTAGAAAATAAAACCAATTATCAAGTCGCACGTCTTTATATATGGAGCTCCAGATCATAGGTTCGAGATAAAAAGTTTTAAATAATGGAAGATACAACCTTCTTTATAGGGAAATAAGGAAAATTCTTAAC # Right flank : ATACCTACTCAACGAAGTTGAGTAGGTATCAGATTTGGGGATCCAACACCTCTCGACGAAAACCTGAAAGGTTTTCGTGAGTCTCGACAAAAATTCAAAGAATTTTTGTGAGTCAGCGAATCCTTTGGATTCGCTTCGACAGCAAATCGAAGATTTGCTTCGATTTATAAAGGGGTTGGAAATAAATGTCTTGTAGCAAATTCTTTTGCCCAGTATGTTATTATAAAGTCTGCTCCGGCTCGCTTAATGCTTAAAAGAGTTTCATAAATTGTGGCATCCCTATCAAGCCAGCCTTTTTCAGCTGCAGCTTCCACCATTGAATACTCTCCACTTACGCAATAGCCCCCAATTGGCACGTTGAAGTTATCTTTAGCCATTTTTAATATATCCAAATATGGAAGTGCAGGTTTGACAAGTATTAAATCAGCACCTTCTTCTATGTCCAACTCAATTTCTCTTAAGGCTTCCTTTGAATTTCCGGGATCCATCTGATAGGTTTT # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCATTGTGGGATGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //