Array 1 5925-5235 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLVC01000038.1 Lelliottia sp. RWM.1 NODE_38_length_46998_cov_115.575563, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5924 28 100.0 32 ............................ ACAAAAGAGAAACCAAATGATGAAACCCAATC 5864 28 100.0 33 ............................ CGCTGGAGCAATTAACGTTATCGGTCGCCTGAT 5803 28 100.0 32 ............................ TAACCTGGGAATTAAGTCAACGGCAGCTGGGC 5743 28 100.0 32 ............................ TTTGCGAAGTTCCTGAGCCAGCCACTCAAGCG 5683 28 100.0 32 ............................ CTGTCAGACAGTAACGGCGTATTCGGAAAAAT 5623 28 100.0 32 ............................ GAACGGCATCACGACATAACCGGCGCGCATGA 5563 28 100.0 32 ............................ ACTACTGCGCTGACTGAATAATTCTTGATTGC 5503 28 100.0 32 ............................ GCTACCAGCGCGAAAGCATCCTACGGGCAAGC 5443 28 100.0 32 ............................ TTGAAAGGAACTCAGAATGACCGTTATTTACG 5383 28 100.0 32 ............................ AAGTGGCCGCGTTATCAAACTCTGTGAAATGG 5323 28 100.0 32 ............................ ACAAAAAAACCGCAAACAAATTACAGCAGAAG 5263 28 85.7 0 ..............GC..G..G...... | A [5241] ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCCCGCAAACTCAACCTGTTTGCCGCTGTCTTGGTGCGTACCTTGAAGAAGTCAAAACAGGGCTTGCGGAGTCGATGAGTGATTTTCAGGTCGTGGAGTTTGAAGAAGCCGAGGAAGCACCACGGAGAAAAGAGTGGCTGCTGGAAGATACTGAAACCAAATGCGATTACTGCCGGGCATTAAACCATGTGCTACTTATCTCGCATTTTGACCGCGATATGCTGCCGCATTTGACCGGGTTGCTTCATGATTTAACGCATTCAATGGCCGCGGATCTTATTGCTTCTCGCTGTGGAAATATGTCGATTCACCTCAATTGTTAACGTGCCGCCCAGTACGCCGGGAGAATATTCCTGGCGTATCTCGTCGAACCCTTTTTTCGACCCTTTATGTAACTCATTGATTTATTAAAAGGCGAAGGGACGTCCAGAAAAAAGGGTTTATTGGATATAAAGGAATTTTATCTTTATCAGACAACAGGATAGGTGTAGATTGCTCCA # Right flank : AACGGCTGGACAGTGCTTTTACCCGGCACGATCCGGCGCAAATCTGGCAGCTTCCGGAGGTCAAACAGGCACTGAGCTCATCGCATCAGCACCATATTTTCGTTGTTCTGGGAACCTCCGTTCTGGAAGTCGGCAGGGATTTTGATGCCGACTGGGGGATCATCGAACCCAGTTCAATGCGCTCACTCATCCAGTTTGCAGGACGCATTCAGCGTCATCGCCAGCAAGTTCCTGCTGAAGAAAATCTGGTGATTCTGAACCGGAATATCCGCGCCCTTCAGGGCGAGAAAGTGGCCTATACACAGCCGGGTTTTGAGACGGAGCAGCATTCACTTCATCACCACGATCTGCGTGAACTGTTTACCGAAGCGGCTTACCGCACGCTGAATGCTATTCCACGTATTGTTGAGAATGCCCCTGGTAATGCGCTTGCATCGCTGGAACATACTCGCCTGCGTGCGGCGTTGCTGGAGGGCGGCGACAAGTCAGATGCCATTGCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 21994-21065 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLVC01000038.1 Lelliottia sp. RWM.1 NODE_38_length_46998_cov_115.575563, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 21993 28 100.0 32 ............................ TGTGTCGTCCGTAACCGTGCCGCGGGCTCCCT 21933 28 100.0 33 ............................ GGGACGTTCAAATGGACGAATTAGAGAATGATT 21872 28 100.0 32 ............................ GTCTGACGCTTGGCATGACAGCGGCTAAGTTC 21812 28 100.0 32 ............................ ATCCCACACCCAGGCGGATAATTTCACGCTCA 21752 28 100.0 32 ............................ ATTCTCAACACCGGAATCGCTTTGATGGGGTG 21692 28 100.0 32 ............................ GACAGGGGTATTCGCGAAGATGCATTGCATCA 21632 28 100.0 32 ............................ CGATATCCCGAAACCGTATCTTTTATGTCATA 21572 28 100.0 32 ............................ TTCACGGGAATACGTCACACGCAGCTGAGAAA 21512 28 100.0 32 ............................ CCATAGAACAATCCTCCTTATCATCTTTTTTT 21452 28 100.0 32 ............................ GACTGGCGACAGGCATTCCATTTTCAAAATGG 21392 28 100.0 32 ............................ AGTTGACCAATTTTGGATAAAGCAGGGGATAG 21332 28 100.0 32 ............................ GGTCACTATTTATCTGAACTATGATGATTGGT 21272 28 100.0 32 ............................ TAAGATTCCTCTTGAGGTATTCAGCACAACAA 21212 28 100.0 32 ............................ AGTGGGAACATCAACAACACCAGCAGGCCAGC 21152 28 100.0 32 ............................ TAACCGCGCAGTAGCAATCCTGGGTAGTGAAG 21092 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCTTTGGTGGCGTGGGTTTCATCAGCGGCATGCTGGTGGAAAAAGGGCTGCCCGGTTTTATCGCCTACGGTGTGTTAGTGGGGGAAGTGGTCGCGCCGGTTCTGATTATTCTGGGGATCTTCACGCGTCCCGCTGCGCTGGTACTGGCATTTACAATGGTCGTGGCATGGCTGATGGTGGGAACAGGCGAAACGTTCGCGCTGGATGCGGTGGGCGCATGGGCGATTGAAAGCCTGGTCTATTTCTTTATTGGCGCGCTTGCCGTCGCATTTCTAGGCGCAGGACGTTATGCCCTGGCGAAAGATCCGGCGTGGCAGTGAACGTTGTTCCTTGTTAACCGGAAATGATTTTTTAAAAAAGGGTCTGCGGACCCTTTTTTATTTGCCGGTTATAACCTATTGATTTTCTTGGCTTGAAATAACGGTGAGGAAAAAAGGGTTTTTTTCAGGAAAAAGAATAATTCTGTTTATTAGACAACAGGATAGGTGTAGATTGCTTCA # Right flank : AATCGAAAGGGTCAACGTTTAAGGATTGGAACGTTCACTGGCAGCTTAAACATTCACATCAGCAGACCCGCACAGGGTGGCGATTAATCCTGCATCAACCCCCTGAAATGACCACTACGAAAAACTGTGCCCAGCAGCAGTACCGCCGGGCACAGGTTATCAGGCCAGGACCAAATCACCCTGCGGATGGCAGGAGCACGCCAGTACGTAGCCTTCGGCAATCTCTGCGTCCGTTAACGTCATGGTGCTGGTGACGGTGTAGTTACCCTCAACCACTTTCGTTTTACAGCAACCACATACACCAGCGCGACAGGCGGCAACCACGGGCACGTTGTTGCTTTCCAGCGCATCCAGCAGCGTACTCCCCACACGACTAAAGAATGTCTGCGCCGGTTGCAGCTTAGTGAATTTGATGCCGCTGGTGGCGGCTTCAGCAACGGGCGTGAAGAATTGCTCTTTGAAGAAGCGGGTCACACCCAGTGCTGTCACCTCTTTTTCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //