Array 1 353003-354187 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025158.1 Thermus thermophilus strain TMY chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 353003 36 100.0 37 .................................... TCCTTGCCCTCGTAGGTCTCCGTCTGGAGCCTCCCTT 353076 36 100.0 42 .................................... TAGGCCCCACCCTAGGGGGTGCCCTAGGCACCCCTTCAGGTA 353154 36 100.0 39 .................................... TGAAAGCACAGTTGTAGTTGGCTTGCCCGTTCTCCTGGA 353229 36 100.0 45 .................................... TGGAGGGGCCTGGCCCGGAACAGGAGCTCTTCGAGCTCTTGCCGG 353310 36 100.0 36 .................................... GGGACGTAGTACGTGGAGACGGCTCCCTCTTCCTCC 353382 36 100.0 44 .................................... GCTGACCGCAATAACGCACATCGCTCACCCCCTAATCCAGTAGA 353462 36 100.0 42 .................................... GGGCCCCGTAATCTGTATCGTCAGGCACCCCGAAGTGCACAT 353540 36 100.0 42 .................................... TTATCCCGCACGACCCCCTGATGCACCCAGAACTTCCGCTTT 353618 36 100.0 41 .................................... CTCGGCGAGGTGACCGGAGAAGCTAAGGAGCAAGTCCTTGA 353695 36 100.0 41 .................................... CCGGTCATAGACCCGGGTGGGGACGGTGGCAATGACAACCG 353772 36 100.0 42 .................................... TCCTTGGCGTGGCGGTAGGAGGCGGGGAGGGGGAAGAACCTG 353850 36 100.0 40 .................................... CGCCCTATGCCTCTACTCCTCCTCCGCCTCTTCCTCCTCA 353926 36 100.0 43 .................................... TCGGTGATGAGGACGCTTCCTTCGCGACTCCTGAACTTAGCCA 354005 36 100.0 37 .................................... ACGGGTTTGACAGCCTTGATGATCTTAGCTTTCATCT 354078 36 100.0 38 .................................... TCGCCGTACTCCCGGGTGACGAAGACGCGGTACTCCTG 354152 36 97.2 0 ..............................C..... | ========== ====== ====== ====== ==================================== ============================================= ================== 16 36 99.8 41 GTTGCAAGAGCTTGAGCCCCGTAAGGGGATTGCGAC # Left flank : AAGCGGCTCATCGCCCTGGTGGAGGAGGCGAGCCACCCTTTGGGGTTCCGCAAAATGATTGAGGTGCAGGCTCAGCGGCTGAAGGGGACCCTTTTGGGGCGGGGGCGCTACACCCCCTTTTACCTCTGGCGATAGGGCGGGCCTTGGCTATACTTGTCAGCAAAATTACGATGCAACTGGCTTTCTTTGAACTTTGAAAAACAAAGCTCAGTGCAGGAGCCCTTTCTTCACCGAAATTTTGACCTGGCCCAACGTTGCGGTGTGTGCTATACTCCCCCTAACCCGGACCTCCGGGCGGGGACCTTGAAAGCCAGTTTTCCCCTTGCCGAAGGCGAATATGCGTTTTTCCCTTCTCATCGCCCCTTTCTCCTGTGGCTTGCCATCGGCACAAACCCCCGAAAACCCCTGTTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTGGCGGTGCCGTCCAGGACGGGGTTCTGAGGGGGGGTAGA # Right flank : CGCACGTAAGCGCCCCCTGCCCCTCGCTTCCCCGGAGGGTCCGACGGGGCCTACGCCCTCTACGGCCGCTTCCACCCTTATATGGACCTCCAGGTGGAGTGAGCTTCCTTTATAGTGGTTCCCCGTGGAGTGGAACCTTGACGACCTTTACGCGGGTCCTGCCGACCCGCGGATTGAGGAGGACCTGAAGGCCGCCCTCGCCCTGGCCCAAGGCCTTGACCCCCAGGGCCTCCTGGACCCGAAAGAGGCCCAGGACCTCTTGGGGCGGTACGAGAAGGCCCTGGAGCTCGCCTATAGGCCCCTGAACTACGCCAGCCTCTACTTCGCCACCCGCACCCAGGACCCCGAGGCCAAGGCCCTCCTGGACAGGGTGCGAAACCGGTACACCGAGGTCAAAAACCGCCTCGTGCCCCTGGAGGTGGCCCTGAGGAAGCTTCCCGAGGAGGCCTTCCAAAGGCTTTTGGACCACCCGGGGCTAGCCGACCTCCGCCACTTCCTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGCTTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 765255-765752 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025158.1 Thermus thermophilus strain TMY chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 765255 36 100.0 41 .................................... CACTCCAGCGCAAGCTCGGGGACCATCGCTCCATTGACCGA 765332 36 100.0 42 .................................... CGCAGATATGCTGGGAGGCTGTCCAAGTCAGCTATATGAACG 765410 36 100.0 42 .................................... GGGCCGTCGCAAGGACGGCCCCGCCGATAACCCACCCGATGG 765488 36 100.0 38 .................................... CGTCTTCTTCCTCTTCGTCTTCTACGAGGAGTTGTTGA 765562 36 100.0 42 .................................... ATGCGGTAGAACTCCCGGTAGCAAGCGCCACACAGCGCCGCA 765640 36 100.0 41 .................................... GACGATGTAGAAAGTGTCGTCCTGGGGGTCCGGGAGGCCCT 765717 36 94.4 0 ................................AT.. | ========== ====== ====== ====== ==================================== ========================================== ================== 7 36 99.2 41 GTTGCAAGAGCTTGAGCCCCGTAAGGGGATTGCGAC # Left flank : GGAGGCGCGCCTTCTGGAGGAGGTGGCCCACCCCCTGGGGTTCCGCAAGCCCCTGGGGGAGCTGATAGAGCTCCAGGCCCAGCGGCTGAAGGGGGCCCTTTTGGGGCGGGGGGAGTACACGCCCTTTTACTTGCGGAGGCACTAGTAACTACACTTATGCGCGAAATTGCCGGGCGAAGGTACGTTAATCGCTTTCTCATTTACTAGTTTCCTTTTTCAAGGTCTTTTCCGCTCCAAAATAAACCCGGTCCACCGTTGCCCTGAGATGCTATAATGCCCTTGTCCGGACCTCCGGGCGGGGACCTTGAAAGCCAGTTTTCCCCTTGCCGAGGGCGAATATGCGTTTTCCCCTTCTCATCGCCCCTTTCTCCTGTGGCTTGCCATCGGCCCAAACCCCCGAAAACCCCCGTTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTGGCGGTGCCGTCCAGGACGGGGTTCTGAGGGGGGTAGA # Right flank : CTGTCTTGCCTGTCAAGCCACCCCTTGGGCTGGCTGACCGGCGTAGTACTCCCTGAGCCGCCCCATCATCCGCCTGAGGAGCTTGTGGGCCACGGCCAAGAGCGCCTGCTTTTTTGTCTTCCCTCGGGAAAGCAAGCGGTGGTAGAAGGCCCGCATCTCTGGGTCGTGCCGCACCGCCACCAAAGCCCCCATGTAGAGCTTCCGCCGCAAAAGGGGAGGCCCCTTCCTGGAAAGCCGACCCCTCTCCACGCTCTTCCCCGACTCCTCCCGCTCGGGGATGAGCCCCGCGTAGGAGGCCGCCGCCTTCGCCCGGCCCCAAAGCTCTGGCGGCAGGAGGGCCAGCACCGCCGCCGCCACCTGGGGCCCCACCCCGGGCAGGCCCATCAGGACTTCCGCCTCGGGGAGGGCGGCGAGGAGGGCTTGACGGCCTTCGGGGGTGTTGGGGAAGCGGAGGCGGGTGGGTTTGGGGGAGTTGGAGACCAGGGCCAGGTCCAGGTGGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGCTTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 3 780417-782199 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025158.1 Thermus thermophilus strain TMY chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 780417 36 100.0 41 .................................... GGTGGCGGTGAAGCCGAGCAGCCGCTTCCCGTCCTCGATGG 780494 36 100.0 41 .................................... ACGATCTCTTCAGCGGGCACTTTTTCGGCCCAAGCGGTTAT 780571 36 100.0 42 .................................... CCCCCTCCACAAGAGGCGGGGAGATTGGGCGTCCAACCTCCC 780649 36 100.0 41 .................................... GTAATGGCGCGCGCACGCCGTAAGAGCATGGGCCCATACTT 780726 36 100.0 40 .................................... TTGCCGTAGCGCTTCCCCGTAGCGGGGTCCACGTAACCGA 780802 36 100.0 40 .................................... AGATAGGGTCAAGCCCCCATTCTCCTGTATGACCTTAGTC 780878 36 100.0 39 .................................... GCCTCAGCGGGCCGGGGTTCTCACAGGATGGGAGTTTTT 780953 36 100.0 39 .................................... AAGCTGGGCGCTTATCCCGATGTGGGCCTCATCAAATGT 781028 36 100.0 36 .................................... CGGCCCTCGTGGGGCCGCCAGTTGCACAGGAGGTGG 781100 36 100.0 41 .................................... AAGACCTCACGCCACAGCTCCCACGCCTTCCCGTCCGCTTG 781177 36 100.0 35 .................................... CAGACCTCCTCCGCTATCCAGAGCTCCTCGCCCCC 781248 36 100.0 42 .................................... CCGATATACTTGCGCAACCCCTGCCCCACTCCCTGGCCCAGG 781326 36 100.0 34 .................................... TTTGGTTCTTTGTTTGGTTCTTTTTTTGGTTCGT 781396 36 100.0 41 .................................... CCGCCGCTTCCCTCTCTGTTACCTTTTGCCCGTCAATGTAG 781473 36 100.0 41 .................................... ACATGTGTGCGTTGCGATGACGAGGTGGAGAGGGACGATGC 781550 36 100.0 42 .................................... CACCGCCAGCGCTTGCCGTCAAAGGTCCAAACCGATTCTTCG 781628 36 100.0 39 .................................... TTCTCCTTGAGGCTTGTAAACCTGCGGGCTATCTTGGCG 781703 36 100.0 39 .................................... CCGCATGGGCCCACAGCTTACGCCTAACGCCCCCATGGC 781778 36 100.0 37 .................................... CCTCCCACATACGCTCAAAGACTTCGCGTGCAAACTT 781851 36 97.2 41 ......G............................. CCCGGAAATCGCCCCGGTGGTGGTTCGCCTTAACCACATGG 781928 36 100.0 43 .................................... AGCCTTTTCTGCGCTTCTACCAGAGCAGAGAGGAGTTCCGCGA 782007 36 100.0 40 .................................... AGCAAGTTCGGCTTCCGTGAGGCCGCGCTTACGCCGCAGT 782083 36 100.0 44 .................................... TGGACGCTCTGGATGCCGCCATCCTCGCCGCCTATGACGCCCAT 782163 36 97.2 0 ..................................C. | C [782195] ========== ====== ====== ====== ==================================== ============================================ ================== 24 36 99.8 40 GTTGCAAGAGCTTGAGCCCCGTAAGGGGATTGCGAC # Left flank : CCGTTCCCAGAAAGGAAAGAATGAGCCTCCGGGAGTCCATGGCTTTCCCCCTTTGGGGGTTAAGCTTACCGCGTCCCCACCCGGCGGCCAAGGTGGGCCTTGGGGGCGGGAGGGGTACGCGCCCCTTTACTTGCGGAAGCACTAGTAACTACATCTATGCGCGAAATTGCCGGGCGAAGGTACGTTAATCGCTTTCTCATTTACTAGTTTCCTTTTTCAAGGTCTTTTCCGCTCCAAAATAAACCCGGTCCACCGTTGCCCTGAGATGCTATAATGCCCTTGTCCGGACCTCCGGGCGGGGACCTTGAAAGCCAGTTTTCCCCTTGCCGAGGGCGAATATGCGTTTTCCCCTTCTCATCGCCCCTTTCTCCTGTGGCTTGCCATCGGCCCAAACCCCCGAAAACCCCCGTTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTGGCGGTGCCGTCCAGGACGGGGTTCTGAGGGGGGTAGA # Right flank : CCATGGGGTCTTTTGGTTAGCCTTTCCCCATGGGAAAGCGTCTTTATGCCGTGGTGTACGACATCTCGGACGACACCCGCCGGGTGAAGCTGGCCAACCTCTTGAAAAGCTACGGGGAGCGGGTCCAGCTCTCCGTGTTTGAGTGCTACTTGGACGAGCGGCTTCTGGAGGACCTGCGGCGGAGGGCCGGGCGGCTTCTGGACCTGGGCCAGGACGCCCTGCGCATCTACCCCGTGGCGGGCCGGGTGGAGGTTCTGGGCGTGGGGCCCTTGCCGGAGCCCCGGGAGGTCCAGGTGCTGTGAGGCCCCGCGTGCATACTTCACACGGGCCCCGGGGGGGCCCCTATATACTCGGGCCATGCCTGGGGACGGCCTGAGCGTGGCCCTGGCGGGCCTCCTTCACGACGTGGGCAAGCTCTACTCCCGGGCCTTTTGGGGGGAGCGGGACGAGCGGGTTCCCGACCGCACCCACACCGCCTACACCGCCCACTTCGTCCAGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGCTTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 915914-913795 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025158.1 Thermus thermophilus strain TMY chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 915913 30 100.0 36 .............................. CCGTCTCCAAGCGCAGGGCTACCCGCACGCGGTGGC 915847 30 100.0 37 .............................. CTCCTCAGGCGGACGGAGGAGGAGTGGGCCCGGGCGA 915780 30 100.0 38 .............................. CTGGACAGAAAATGGAACGTGATCCCCCCGATTTTTTG 915712 30 100.0 39 .............................. ATGGCCTCCTCCGAGGGGTTGTCGGCCACATACGCCCCG 915643 30 100.0 37 .............................. TAAAACCCGCCCTCAGGGACGAGGATGCGCCTCGCCC 915576 30 100.0 39 .............................. CCCTGATTGCCACCGCCACGCTGGGGACGCCATACACGC 915507 30 100.0 37 .............................. CCCTCTTCATCGGTAATAACCACCGCCCTCCAGTTGT 915440 30 100.0 33 .............................. GCGAGGAGGTGAAGGAGGTCTACCCCCCTCTCA 915377 30 100.0 37 .............................. GCGGGAAGGCCCCTACACCCTGGAGGAGGCCATCGGG 915310 30 100.0 39 .............................. CTGAGGCCTGTCGTTTGGTGGGGCTCGTGGAGGGGGAAG 915241 30 100.0 37 .............................. TCCCAAGGGACGTCCAGCTCGCTCAGGTCCCGCACGC 915174 30 100.0 38 .............................. TTTCTGGTCCATCTGGACCCCCAAGCCACAGGTGGGCG 915106 30 100.0 37 .............................. ATACTCCGGGAGTTTTGCGGCCGCGCCCTAACCCGTG 915039 30 100.0 37 .............................. TTGGTTCGTCTGGGCTAACTTCGTCTGCGCTTCCCTG 914972 30 100.0 33 .............................. CTAGAGCCTCGGAACGGCGTATGCCGAGCCGGG 914909 30 100.0 38 .............................. ACGGGGTGGCCCACCCCGTACGCTGTTAGCCCGGGAGG 914841 30 100.0 38 .............................. TTCTTCTCCCTCATCCTTGAGCCCTTTGTGCGGGGCGG 914773 30 100.0 39 .............................. CAGGCGAACAGCCCTGCATACGCTCCATGCCCGGGAAAT 914704 30 100.0 38 .............................. CTATAATGGCAGTCGTATGAGGTTGAAAGGGGGTGAGA 914636 30 100.0 39 .............................. CCCGGGCTCACCTGCAGCCCGCTCACCACGTACTTGCGG 914567 30 100.0 35 .............................. ATAGTCTCTCAACTTCATTTCTCCCCCCTCGAAAA 914502 30 100.0 38 .............................. ACCTCCCTAATGGCCCGCCGAAGCTCCGGCAGGGCCAT 914434 30 100.0 36 .............................. GGCGCTTTACCACCCTTTGAGCCCAAGAGATGTACC 914368 30 100.0 36 .............................. TTTTCTGCCTGCCGCCGTACGCCTGGAACTCGGGGC 914302 30 100.0 40 .............................. GTTTGACGCGCTCGGTACCTCCGAGGACCTGCGCCGGGAA 914232 30 100.0 37 .............................. ACGTTCCGCTCGTTCAGCCACCGTGCAATTCTTTCCT 914165 30 100.0 36 .............................. AGAAGCGGGTCCAGGGTGGTGCGGAGCTGACTAAAG 914099 30 100.0 38 .............................. AGGCCGAGCAGGCGCTCAGGGCGCTGAGCGGGGCGTTT 914031 30 100.0 39 .............................. CAAGCGACCTCAAAGGGCCAACTACACCACCGCCCCGGA 913962 30 100.0 40 .............................. AAGTCCGCCGCCATACTGCCCGCCTACGCCGCCGCTCCCA 913892 30 100.0 38 .............................. CCCAAGCCGTACCCGGGGTTTACGCCGTGCGGCTCCTA 913824 30 96.7 0 ........................C..... | ========== ====== ====== ====== ============================== ======================================== ================== 32 30 99.9 37 GTTTTGACCGTACCTATGAGGGTTTGAAAC # Left flank : GGGCGGTCTTTGGGGAAACGAGGGACGAGGAGGGGGAGGAGGGCTTCGGTGAGGGCCCAGGGGTCTTGCAGGGTGGGGTGATGGAGGAAGCGCCAGAGGCGATTGAGGCGGCTTTGGGCCAGGGTGGGGAGGGGGGTTCTGCGGGCGAGGTCGGAGAGGGTGGGGTCCAGGGGGGTAGTGAGGAGGGTGGACAGGAAGAGGGCGAGGTTGGAGCGGATGGTTTTCCTGAGGGAGGCGAAGACCTTATGGACCCAGAGGGTGATAACTTGGGAAAGGGGGGTGGTGGGCGGCACACCTTACTTACCCCCCTCTTCTCTTCCCTTGTCAAGCCCCAGCCCTCAAAGTGATGAGAGCTCAGAACCCGGGGGGGTTGACGCACACCCCCCGACCTGCTACATTGACCCTAGGCGGCTGGGTCTTCCCCATCTCGGCCGCAGAGGTTCTTGAAAACGAAGATTAAAGCTCTATGAGAGCCTGGCGTGCAGGACGAGGCTTTGGCT # Right flank : TCCTCTGGTCCTTTTGCGGAGGGGGGCTTGCGTAAAGGGAGACTTCAGGCTACACTTCCGGCAAAACCATCCTATCGCCGCAGTTCTTCTTAGGGAGGGTCGCAAAGAGTTTATGGAGCCCAAGGAGTGGAAGCTCAAAGCCCTAACGGACATATGGACGGGAGACAGGGAACGAAAGGGAGACCGCCTTACACCCACGGGGCTCATGGGCTCCCTGCGCTGGTGGTTTGAGGTCCTGGTGCGCGGATTGGGGGGAAAAGCGTGCGACCCTACAGCCGAAAACGTACGTTGCCCGGGTGATAACAAAAAACCGCACGAAGGTGGCCACCACTGCGTAGTTTGCGAGCTCTTTGGTTGCACCGGATGGGCACGCAAGTTCCGGCTGATGGTTCTGGACGACAAGGGCCAGGTCATCCAGAACCAGATCCGGGCAGGTCAGACCTTCGTCTTGCGCTTCATCCCCCTGCGGCCCATCGCCCCGGAGGAGTGGTGCCTGCTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGACCGTACCTATGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 5 925759-926924 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025158.1 Thermus thermophilus strain TMY chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 925759 30 100.0 38 .............................. TGATGCGGCGTTTCGCGGTGCTTCTCCTCGGTTCCCTA 925827 30 100.0 38 .............................. ATAACTGCCATGCGGATTGACCTGGAACGAACTCGCTC 925895 30 100.0 39 .............................. CTACGTGGGTACTGGGGGGGCATCCTCTAGCGAGGCCCG 925964 30 100.0 37 .............................. ACGCCTATCTCACCGAGGATCCTTTCGTGGTCGCCAA 926031 30 100.0 37 .............................. GATCTACGACCCCCACTGGGCCTGGGCGTGGCCCCGG 926098 30 100.0 39 .............................. CCTGCGCTTCGCCACCGGAGACCGCCTGCGGCTGGACGG 926167 30 100.0 37 .............................. CGTTTGCCGTGCCTGTGTTGTATTGACCTACCTCTAG 926234 30 100.0 37 .............................. CTCGTAGAGGAGCGTGATGGTCCGGAGCTTTTCCACG 926301 30 100.0 36 .............................. AGGACAACCAGCGAGCGCTCCTCCACCTGACCAGGG 926367 30 100.0 35 .............................. TCAGTGTGCCCGGGGTGGACCCCGCGAATGGGATC 926432 30 100.0 37 .............................. CTTGCCCGTGTGGTTTCCCGAAGACACAGGGGCCCTG 926499 30 100.0 39 .............................. TACTCACCGAACTCTCTGGGCCCTGGCCGGATCACTCAG 926568 30 100.0 38 .............................. CCTGGCCCCTTTCACCCGTCAATATGACGGGACCAGTT 926636 30 100.0 37 .............................. AGGTGGTCCACGAGCCCCCGGTCCACCAACACGGGAA 926703 30 80.0 28 ....................A..CCCCG.. CTCGCCCTCATGCGAGGGGAAGACACGG C [926725] Deletion [926761] 926762 30 100.0 36 .............................. CCGAGCTTTTCCAGGGTCATGCCTCACCTCCGAGGA 926828 30 100.0 37 .............................. CCCCGATGGACGCCCCCACCTGCACCGGGTCCCCCAC 926895 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 18 30 98.9 37 GTTTTGACCGTACCTATGAGGGTTTGAAAC # Left flank : TCTACGAGGGCGAGGTCCTCCACGTGGAGGGGAGCGTCTGGGGGGTGGTGCGGGTCTAGATGTACGTGGTCATGGTCTACGACGTGGCGGTGGAGCGGGTGGCGAAGGTGCTCCAGGTGGGGCGGCGCTACCTCACCTGGGTACAGAACTCGGTGCTGGAGGGGGAGCTTTCTCCGGCCCAGTTTGCTCGGCTCAAGGCGGAGGTGAGGAAGGTGATTGAGCCCACGGACGCGGTGCGCTTTTACGTCCTGCCGGGCCCGGGGGCCCTGAGGATAGAGGTTTTGGGCACCTCCAAGAACGAGCCGGGCCAGATCGTTTGACCAAGTCCAAGTTGGCGCCAACCCCCGATCCCCCCCAAAACCCGGGGGGGTTGACGCACACCCCCCGACCTGCTACATTGACCCTAGGCGGCTGGGTTTTCCCCATCTCGGCCGCAGAGGTTCTTGAAAACGGAGATTAAAGCTCTATGAGAGCCTGGCGTGCAGGACGAGGCTTTGGCT # Right flank : CGCGATCTCCCGGGCCACGCGCTGGAGCATGTCCTCTACCCGTTTTGACCGTACCTAGGGCTTGCCTTGCAAAGGTCGGGAGGACGGGTGTATATCTCCCTCCTGATGGACAAGCGAGGCTTTGTTCGCCGGGAGGCAAGCCCCAAGGAGGTCCTGGAACACTGCCTGCGCCTGGCCCGGGAGGTGGCCCTCCCACCCCCAAAGGCAAGCGGGGCCGCCCCTGGCGCTACGACCACGCCCGCAAGGTGTTCCCCTGACGGGGAAGCAGCTACCTGGCCCTCCTTCTCTTCCGCGCCTTCTTCCGCCTCACCTACCGCAAGACGGAAGCCCTCCTCCAGGACCTCATGGAAGGCCCCTTCCCTTCCCACCAGTCCCTGGCCCGCTACGCCGTGCACCACCTGGACCCCAAACTCCTTGAGGCCCTCCTGGAGAGGCTTGCCCGGGAACTGGAGGCCCATCTCGCCCCGGAGTCCTCGCCGGAAGGCGAAGCGGCTTCGGAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGACCGTACCTATGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 6 1185194-1184772 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025158.1 Thermus thermophilus strain TMY chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 1185193 36 100.0 43 .................................... TAGACCACCTCCGTCCTCCCGCTCCGGCGCGCCCGCCTCCGCA 1185114 36 100.0 43 .................................... TAGCTCTCCAGGCGGTACCGGCCCCGGAGGACCACGAAGGAGC 1185035 36 100.0 41 .................................... TAGAGGCCGCTTTTGGGCCTGAGGAGGGCCACGTGGTAGGC 1184958 36 100.0 41 .................................... CCCCAGGGAAGGGCGACCGGGCGGATGGCTTCATCCGCCCG 1184881 36 100.0 38 .................................... CAGTAATAGCCCACCCCGGGACCCTGCGGGCCCACGGG 1184807 36 94.4 0 ................................AT.. | ========== ====== ====== ====== ==================================== =========================================== ================== 6 36 99.1 41 GTTGCAAGAGCTTGAGCCCCGTAAGGGGATTGCGAC # Left flank : CGGGCCCGCAGGAAGCGGCGCCGCTAAGTGCCCACCCCCTGGGGTTCTGCAACCCCCTGGGGGAGTGCAGGCCCAGCGGCTGAAGGCGGCCCTTTTGGGACGGGGCCGCTACACCCCCTTTTGCCTCTGGCGATAGGGCGGGCCTTGGCTATACTTGTCAGCAAAATTACGATGCAACTGGCTTTCTTTGAACTTTGAAAAACAAAGCTCAGTGCAGGAGCCCTTTCTTCACCGAAATTTTGACCTGGCCCAACGTTGCGGTGTGTGCTATACTCCCCCTAACCCGGACCTCCGGGTGGGGACCTTGAAAGCCAGTTTTCTCCTTGCCGAAGGTGAATATGCGTTTTCCCCTTCTCATCGCCCCTTCCTCCCGTGGCTTTTCATCGGCACAAACCCCCGAAAACCCCCGTTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTAGCGGTGCCGTCCAGGACGGGGTTCTGAGGGGGGTAGA # Right flank : TGTCTTGCCTGTCAAGCCACCCCTTGGGCTGGCTGACCGGCGTAGTACTCCCTGAGCCGCCCCATCATCCGCCTGAGGAGCTTGTGGGCCACGGCCAAGAGCGCCTGCTTTTTTGTCTTCCCTCGGGAAAGCAAGCGGTGGTAGAAGGCCCGCATCTCTGGATCGTGCCGCACCGCCACCAAAGCCCCCATGTAGAAAGGGGCGCGCCCTAGAGGGAAGGGCTCCCAGAAAAGGGGCCCGGGCGCGCTTCACGGGGGGCTGGACGGCCCGGCGCCCGCCCCTTCGCGTCGTTCCCGACTCTGGGGCTCTTTAGAGGACCAGGGTCCCCGCCCCCACGGCGCTTAGGGTGGGGGCCTCGAGGTCCAGGCGGTGGGCCAGGACCTCGCCCCTCCTTCCCCGGAGGAGGGGGAGGAGGCTTGCCACCACCTCCACCCCGTCTATGCGGGTGGGGTTTTCCCCGAGGAGGGCGAGGGCGGCCTCCGGCGCCCCTTCCGCGATCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGCTTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 7 1977888-1979997 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025158.1 Thermus thermophilus strain TMY chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1977888 30 100.0 37 .............................. AATACGCCCTGGCCTGGGAGGGCCTAGGGGTGCGCAC 1977955 30 100.0 38 .............................. TGGTACGGGACTGCCCGAAGTATCTCCGCCACAGGAAC 1978023 30 100.0 38 .............................. CCTGCCCACCTGGTCCGACGAGGAGCTGGAAGAGTGGG 1978091 30 100.0 36 .............................. TTCAAGTCGGATGGCTGGTTCACCATTCCGAGGCTG 1978157 30 100.0 35 .............................. AGCCAAATGTCCTGCCCACCCTCTTCATCGGGGGG 1978222 30 100.0 39 .............................. TAGCATTACCAGTCGGTTTTGCAAAGTCCCACCCCTCTT 1978291 30 100.0 36 .............................. AGCCCCGCGAAGGCCCAGGGGGGCACCCCCAGGGCC 1978357 30 100.0 38 .............................. ATGGGGAGTGGAGTTTCGGCGAGCGTGGTTTCTAGGCG 1978425 30 100.0 32 .............................. AGCGTCACGGTCACGAGGTTGGAGGAGGTCCG 1978487 30 100.0 41 .............................. CGTGAATAGCTCCCACCCTTTCATGTGGTCCTCGCGAGCTC 1978558 30 100.0 36 .............................. AAGGCCTGGGCGCTCCATGCCACCTGGCTGGACCTT 1978624 30 100.0 38 .............................. AGGTCTTCGGGAGGGGGTGGGTGCGCCGCGTGGCCGCC 1978692 30 100.0 36 .............................. CGAATAGCCATAGCGGCTTTCTCTTCTGTAGCCACC 1978758 30 100.0 36 .............................. GCCGCCCTGGGCTCATCCCGAGGACTGGGAGGCTTC 1978824 30 100.0 37 .............................. TTGAGGAGCCTATCTTCCGCCAGCAACTTAAGCATCG 1978891 30 100.0 37 .............................. CCCTTTACGCCCGCAAGGACGCGGCGGACCAGCTCCG 1978958 30 100.0 36 .............................. ATCAATTCGGCAACTTGGCAAGAGGCTGAGCGGCTT 1979024 30 100.0 38 .............................. CGCCTACCCCTCGGCCTCGCCGAGGGGCTTAAGCGCCC 1979092 30 100.0 37 .............................. CTGGTAGACCTCAACCGAGCGGCGCCAGAAACCGGGC 1979159 30 100.0 37 .............................. TTGCGGTTCCCCGGAGTGGCCTCCCGGGCGAACTCGT 1979226 30 100.0 39 .............................. AGGAACTGGTGGGGGTGCTCAAGGCTCTCACCGCGGCCC 1979295 30 100.0 37 .............................. GCCCCACAAGTGGAAAGCCTTATGGCCCGCGCCCTGG 1979362 30 100.0 36 .............................. TTAGTAGAGATTCTCCGTCTCCTCCAATGCACTTTG 1979428 30 100.0 38 .............................. CCTCAAAGGCAATCTCCGGGGCGATGCTATAAACCTTG 1979496 30 100.0 38 .............................. CGCAGAGTTCCCCCCGGAGGGGGGGTCCCCCCCAGAAG 1979564 30 100.0 35 .............................. TTTTTTTCCTTCATCTCCTCCTCCTTTCCCCCTGG 1979629 30 100.0 39 .............................. AGTTCTCCCTCGATCCACCAGCGGTGCTTCACGTTTCCC 1979698 30 100.0 38 .............................. TCTTTAGGGGGGGTTATAGGGGGGGAGGTGGGAGATTT 1979766 30 100.0 37 .............................. TTTGCTGCCAATAGATTGCGTCACGAGCGGCCCCCAC 1979833 30 100.0 38 .............................. TTGTAGTCCACGGACTGGATGATGCACCGCTGCCACAC 1979901 30 100.0 36 .............................. CCGGGTATAAGACCCACTCCGATTATGGGCCCGGTC 1979967 30 93.3 0 G............................G | T [1979993] ========== ====== ====== ====== ============================== ========================================= ================== 32 30 99.8 37 CTTTTGACCGTACCTATGAGGGTTTGAAAC # Left flank : CTGCAAGTTTTGAGTCAACCTGGACGTGGCCGAGGTGTTCAGGCCCGTCCTCGCCGACCGGTTGGTCTTCCGCCTCGTGCGCAGGGGGCAGGTGAAGCCGGGGCACTTCCTCCGAGAGGGGGAAGGGGTCTTCCTCTCCGAGGCGGGAAGGAGGCTTGTAGTGGAGGAGTGGGAGAAGACCCTCCAGACCACCTACCAGCACCGCGCCTTGAGGCGGGCCGTCTCCTACAGGACCACCTTGCGCCTGGAGCTCTACAAGCTGGAAAAGCACCTGATTGGGGAACAGCCCTACACCCCCTACCGCCTGCGCTGAACTTTGACCAAGTCCAAGTTGGCGCCAACCCCCAATCCCCCCCAAAACCCGGGGGGGTTGACGCACACCCCCCGACCTGCTACATTGACCCTAGGCGGCTGGGCCTTTTCCACCTCGGCCGCAGGGGTTCTTGAAAACGAAGATTAGAGTTCCGTGAGAGCCTAGCGTGCAGGACAGCATTTTGGCT # Right flank : GAAATCCCCCTGATCCATTCCCTCAGCATCCTCCCGGCCACCAGTGAAAGAGGGTATGGCTCCGAATCAGGCCCGGCTGGGTCTGCAGGTAGGCGCACCGGGCCTCCACCCTCGCCCAAAGCTCCTCCTCCGTCTCCACCCGCCCGTTGGCCACCACCGCGTCCACCAGGGGCCACACCCGCGTCCAAGACCAAAAGCAAAAGCTTCCCCTCCCCAGCCCCACGCAACCGGGCAAAGCGCCCCAGGACCTCCGAGAAGGCCACAGCGTTCACCGTGGGCAAAAGCCAAAACTCGCTCTCCCCTGTACCCGGACGCACGAAGCCGTACACGTAAAGCCACCGGTACCGCGGCCGCACCCAGGCCAGGGGCGTCTTCCCCCGGGGCGCCCACACCCGCCGGTACACGGGCTTCAGGCCCAACCTGTGTTCGTCAAAAGCCCAAAGCTCCAGGACAAGCCAGGGGAAGAGGCACTTCAGGAGGACAACGGTGAAGAAGAGTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTGACCGTACCTATGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //