Array 1 74464-72523 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVFD01000013.1 Coprococcus catus strain AM28-39 AM28-39.Scaf13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 74463 30 100.0 35 .............................. GAATATCTCGATTTAGGTCGGAGCCAGCTTGAGGA 74398 30 100.0 34 .............................. AAATTTGGGTTAGCTTTTGCCAGTTCTTCTTTTG 74334 30 100.0 38 .............................. GTGCTTTTGTTGATCGACCTGGTAACGGGAGATTTCAC 74266 30 100.0 36 .............................. TTACGTGGTAACAGCCGTGCGTTCCTTTCATTCTTG 74200 30 100.0 35 .............................. CGTACAGAAGAATCAATAGAGTACGATGCGTACCA 74135 30 100.0 35 .............................. GGTACTGATCTGCTGTCATCTGTCCCATGTTTTCC 74070 30 100.0 36 .............................. GTGATTCTTTTGTCGTGGCGATTGCCCAGTATGAGC 74004 30 100.0 37 .............................. TTCACAAAACTGAACACATCCCACAACCAAGGCTCGC 73937 30 100.0 37 .............................. ACGATGGAACCACGCCTTCGTCTGGTTGCCTTCTGGA 73870 30 100.0 36 .............................. TTGGAGAGGTTACAAGCGCGGCACGCAGCGTGGCCG 73804 30 100.0 36 .............................. TTCTCCCCGGCTGCTGTTTTCGTACTCCACTTCTAT 73738 30 100.0 35 .............................. CAAACCGCAGTTGATTTGTTATGACCCGCACAACG 73673 30 100.0 36 .............................. TTGTTGACCAGAAGATCAAGAGTGTGAACGATCTGA 73607 30 100.0 35 .............................. AGATCTGTTACACGAACCCTTCTAGGGTGTTCAAC 73542 30 100.0 36 .............................. TGTTATGACCGATATGTTATCGTCCTTCAAAACAAG 73476 30 100.0 37 .............................. TATGTATGGACTATGATTTTGAGCGATAATTATTAAG 73409 30 100.0 36 .............................. TATTCTCATTGGCATTCATTTTCACGCCCACAGGAC 73343 30 100.0 37 .............................. TGATTCTCAACGTGTGTTCGTTGGTGTTGTTGTAAGC 73276 30 100.0 35 .............................. TACGTTGCAAGAATTAAAAGCGTTGCCAGTGCAAA 73211 30 100.0 35 .............................. TCATAGCCGTTGAACAGGTAAACGTTGGTGATACA 73146 30 100.0 36 .............................. GATTAAGACGCCAGCAGGAACACATGAAGAAATGGT 73080 30 100.0 36 .............................. TACTTCGCCGCGATTCCTGATAAGGTGTCGCCACTC 73014 30 100.0 35 .............................. GACATCCGGTCGTCAATATGTATTCAGTACAGACG 72949 30 100.0 37 .............................. TGGCTTTGTCAAGGACTTCTTTGCTTGCATCTTCAAG 72882 30 100.0 36 .............................. AAATCATCGTCAAGGGCGATCCAGCCGTCTTCGTTC 72816 30 100.0 35 .............................. GTGTTTCGGACTCCGGTTGACCTTCCGAAGCCAGA 72751 30 100.0 35 .............................. GCAATGATGTGATATTCATGATGGCGTTTGTCTGT 72686 30 96.7 36 .T............................ CCGTTCAGAAGAATTCTAACATCGACGATAGCGTCT 72620 30 93.3 38 .T.......A.................... TTTTGCCGATCATCGGCATTATTGCTGGAGCAGCGGCA 72552 30 93.3 0 .T..........................G. | ========== ====== ====== ====== ============================== ====================================== ================== 30 30 99.4 36 GGATTAATAGAATCAGATTGGAATTTAAAG # Left flank : AGCGAAGCAGGACAGAAACGTTGGTCCCGTATCTTTAAAATTTGCAAGAAATATTTGTCACATATACAAAATTCAGTTTTTGAAGGCGAAATATCGAAACCTCAGCTGATGCAGTTGAAAAAGGAAATGCAACCGTATATAAATGAAGAGCTTGATTCAATTATTATTTTTAAAAGCAGGCAGGAAAAATGGCTGGATAAAGAATTTTGGGCAAAAGAGGATGATAAAACAAGTTTTATGTTATAATAGATGGTGAAAAAGATGTCTGTATGGATTTTCTTCAATGGGCATCGGAGAGAGTGAGATGAAGGTTAAGGTTTTTAATTGTCGACCTGTAATAATGCAAAAAGTGCAGGGGGTCGACAGAGGCAAAAATGCAGATAGAATCAGGCAACTGGAAATAATGAAGTTTAAGAGGTTAAGGCATACAGATGTTTATTTCTTAGGTCGACAGAAATAAGTGTTGTAACCTGTGGTTTTAAAGGTGTCTTTGAACACGG # Right flank : ATTATTTAATAATATAGGGAGCATAGCTGACACCCTGGTTATGGGCAGGCAGGACGAAGGAAGTTAGGACCTCTGGAGACAAAGATGATCCTGGTGGATATAGGAGGTTAGATGCCATAGAGGGATGGGTATACACAAGGCCAGTAAAGCGGAAATCAATGACGTTTTATTTCGTATACCCTCTAACCACTATTTCAGTACCTGATACATCGAAATGCTTATAGCTGTGGCTTATTCACTGAGATATGAAAAGTTGAAAAAACTTGAATTTTCAATAAAAAACACTTGATTATATGAGGAGGGTACATACATTTTGAGAAAATGCACTATCTAAGATGATTTTTTATGACGTATTATGTAGAAGGCTAATATATATAAATTAATGGGATGTAGATATAAAATTTAGAAAAAGGTTGCTAGATAGAAGGAATGCAGTGTATTATAGAAGAAATGGCATATTATTTTAGATTTAGTATTTGAAAATGATGTAATGGCATTAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATTAATAGAATCAGATTGGAATTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 19425-20978 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVFD01000014.1 Coprococcus catus strain AM28-39 AM28-39.Scaf14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 19425 36 97.2 32 ...............G.................... CAATAGTCAAGACGTATAAATCTGTCAAGTTC 19493 36 97.2 34 ...............G.................... TGTTTGAATTGGACAGAGTGTCCATTTCAAAGCA 19563 36 97.2 40 ...............G.................... GTTATATCAATTAAGATGTTGAAGAGGAGGAAAATGAACA 19639 36 97.2 34 ...............G.................... ATACATGTTGTTTTGTAAGGCTCTGTCTGGAATA 19709 36 97.2 35 ...............G.................... CGCCTAAAAACAAGCCAGATGTAAAACCAACTACC 19780 36 97.2 39 ...............G.................... AATTCTTTTGTCTGGTTTGTTACTTTAATCATAGTTTAA 19855 36 97.2 34 ...............G.................... TCATCATAATCATCGATAGATAATCCGTAATACT 19925 36 97.2 37 ...............G.................... ATTTTTTAATCTTGCGTTCATCATGATTTTTACCTCC 19998 36 97.2 41 ...............G.................... TTTTCAACTTCTATAATTCTTGTTGCCCCATTTTCCGAAAA 20075 36 97.2 40 ...............G.................... GCTATTCAATTTGTACGACTAGGAAAATTTTATAAGACCC 20151 36 100.0 39 .................................... AATATGAATCAGTTTCCCTATCATAATGATAGAGCCATA 20226 36 100.0 37 .................................... GCCTTTGTGATTTTTTCTAAGTAGTAAACTCCTTCGT 20299 36 100.0 37 .................................... TCTTTGCGAATCGCTCGCAAACGTTCACCTTGCGTCA 20372 36 100.0 36 .................................... AAGTTGCCCTGTATTGCCTTTGATACGTACACTATT 20444 36 100.0 38 .................................... ACTAATCAGAAAAGAATAACCTCTTGTCTGATATACCC 20518 36 100.0 37 .................................... TAATTTACTATGTCTTTTTCGTACTGTTTAATTCTTT 20591 36 100.0 34 .................................... GTATTGTAGCAATTTCTCTATTTGTCATTCCACG 20661 36 100.0 34 .................................... AATCTCGTCTTTCTCAATACTGTAAACTGTTGCT 20731 36 100.0 36 .................................... AGTAAATCTTATCATCATAGCCCATTAGAAACAACT 20803 36 100.0 36 .................................... CTTCAGTTACTTTCAATGGTCGTACTTCCTTATGCT 20875 36 100.0 32 .................................... TTTTTCTCGCAGGTACAAAGATAATAGAGCGA 20943 36 86.1 0 .....................TC........C..TT | ========== ====== ====== ====== ==================================== ========================================= ================== 22 36 98.1 36 ATTTGGAAATAAGATACCCCGAGAGGGGACGGAAAC # Left flank : CAAAGACGATTATCTATGATCTTTTCCAACAGAAAGAAGCTGTCCGGGTAATAAAGGATATCTTCCGAAAGACCAATGTGCCACGGGAGCATAAGCACGACAAGGATATAGGCCTTGGTGTGTCACCTCATGTGCTGAAGTGTACAAAGTTGAATGGGAAAAAGTATATGATGGGACAGTGTGAATTAAAGCTGCAGGTGATGTAAAAAAGCAGTTGTTTGGTGAGAAGGAACAGTCAGTCAATAGGAGATGCGAGAATGGAGGATTGACTGACTGGTTGCTTTGAAAATATCAGATTTCAATGCAAATATGGGAAATATGTGTTAAAATAGGTGTGTGCAGCGGTTCATTAGAAAAAAAGAAAATTTTGCCGCGCACCGCATAAATACTGCATTTGGAGGCGATTGTGTATGTTAGATATAAGAAAAATATACAAGAAAATGATTTGCCACGCAAAAGAGTCAGAAAAGCCAGCAAAATAGCGGGCTCTGGCGGGCAGT # Right flank : TTTATCGTTACAAAACGATGAAAGGGGGATGAGTACGTGAGTCTACTGTATGTGAATGAAAATGGGGCGCTCATTGGTATTGAAGGCAACAAATGTGTGGCGAAGTACAAAAATGGCATGAAGACTTTTATTCCAATTGAGTCATTGGAAGGTATCACGATTATGGGGCAGTCGCAGGTGACGACGAAATGTATGGAAGAGTGCATGATGCGTGGGATACCTGTGACTTATTTCTCAAAAGGCGGAAGATATTTTGGGCGTTTAATGTCCACGGGCCATGTGAATGTTGAAAGACAGCGAAAGCAGAGCGCATTGTATGATACGGATTTTGCAGTGGAACTTGGAAAGAAAATTTTGAGCGCCAAGGTGAAGAATCAGAGTGTGGTTTTGCGGCGATATGAAAAGAGTAAGCATAAGACTCTGGAAGAGGAACAGCAAATGATGTCGATTTGCCGTAACCGTATTCTTACGAGCAAGAAGATAACGGAGATGATTGGTTT # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGGAAATAAGATACCCCGAGAGGGGACGGAAAC # Alternate repeat : ATTTGGAAATAAGATGCCCCGAGAGGGGACGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //